Published in Proc Natl Acad Sci U S A on March 29, 2004
Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A (2006) 8.90
Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol (2012) 8.15
The human microbiome: at the interface of health and disease. Nat Rev Genet (2012) 7.54
An African origin for the intimate association between humans and Helicobacter pylori. Nature (2007) 6.91
Global diversity in the human salivary microbiome. Genome Res (2009) 5.16
Origin, spread and demography of the Mycobacterium tuberculosis complex. PLoS Pathog (2008) 3.10
Comparative genomic and phylogeographic analysis of Mycobacterium leprae. Nat Genet (2009) 2.76
Impact of recombination on bacterial evolution. Trends Microbiol (2010) 1.98
Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet (2010) 1.89
Age of the association between Helicobacter pylori and man. PLoS Pathog (2012) 1.62
Geographic differences in gastric cancer incidence can be explained by differences between Helicobacter pylori strains. Intern Med (2008) 1.62
Human and Helicobacter pylori coevolution shapes the risk of gastric disease. Proc Natl Acad Sci U S A (2014) 1.48
Horizontal versus familial transmission of Helicobacter pylori. PLoS Pathog (2008) 1.48
Helicobacter pylori's unconventional role in health and disease. PLoS Pathog (2009) 1.47
Molecular epidemiology, population genetics, and pathogenic role of Helicobacter pylori. Infect Genet Evol (2011) 1.44
Genome sequence analysis of Helicobacter pylori strains associated with gastric ulceration and gastric cancer. BMC Genomics (2009) 1.42
The 5300-year-old Helicobacter pylori genome of the Iceman. Science (2016) 1.41
Ancestral European roots of Helicobacter pylori in India. BMC Genomics (2007) 1.26
Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity island. BMC Genomics (2006) 1.23
High frequency of gastric colonization with multiple Helicobacter pylori strains in Venezuelan subjects. J Clin Microbiol (2005) 1.20
Genomic evolution and transmission of Helicobacter pylori in two South African families. Proc Natl Acad Sci U S A (2013) 1.18
Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population. BMC Microbiol (2009) 1.17
Helicobacter pylori typing as a tool for tracking human migration. Clin Microbiol Infect (2009) 1.12
Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses. J Bacteriol (2010) 1.10
Comparing genomes of Helicobacter pylori strains from the high-altitude desert of Ladakh, India. J Clin Microbiol (2005) 1.08
Microevolution and patterns of dissemination of the JP2 clone of Aggregatibacter (Actinobacillus) actinomycetemcomitans. Infect Immun (2007) 1.08
Amerindian Helicobacter pylori strains go extinct, as european strains expand their host range. PLoS One (2008) 1.07
Comparative genomics of Helicobacter pylori isolates recovered from ulcer disease patients in England. BMC Microbiol (2005) 1.06
Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis. Gut (2014) 1.05
Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia. PLoS One (2011) 0.99
Ethnic and geographic differentiation of Helicobacter pylori within Iran. PLoS One (2010) 0.98
Novel 180- and 480-base-pair insertions in African and African-American strains of Helicobacter pylori. J Clin Microbiol (2004) 0.98
The skin microbiome: current perspectives and future challenges. J Am Acad Dermatol (2013) 0.97
A population genetics pedigree perspective on the transmission of Helicobacter pylori. Genetics (2006) 0.95
Evolutionary History of the Helicobacter pylori Genome: Implications for Gastric Carcinogenesis. Gut Liver (2012) 0.92
Disrupted human-pathogen co-evolution: a model for disease. Front Genet (2014) 0.92
Friend and foe: factors influencing the movement of the bacterium Helicobacter pylori along the parasitism-mutualism continuum. Evol Appl (2014) 0.91
Polymorphism in the Helicobacter pylori CagA and VacA toxins and disease. Gut Microbes (2013) 0.89
Helicobacter pylori genotyping from American indigenous groups shows novel Amerindian vacA and cagA alleles and Asian, African and European admixture. PLoS One (2011) 0.89
The impact of human conflict on the genetics of Mastomys natalensis and Lassa virus in West Africa. PLoS One (2012) 0.87
Prevalence of Mycobacterium tuberculosis in Taiwan: A Model for Strain Evolution Linked to Population Migration. Int J Evol Biol (2011) 0.87
Geographic distribution of methyltransferases of Helicobacter pylori: evidence of human host population isolation and migration. BMC Microbiol (2009) 0.86
Tiny travel companions. As microorganisms have accompanied mankind's journeys around the globe, they could help scientists to unravel our past. EMBO Rep (2007) 0.85
Gastric ghrelin in relation to gender, stomach topography and Helicobacter pylori in dyspeptic patients. World J Gastroenterol (2009) 0.84
Recent acquisition of Helicobacter pylori by Baka pygmies. PLoS Genet (2013) 0.83
Molecular Epidemiology of Helicobacter pylori Infection in Nepal: Specific Ancestor Root. PLoS One (2015) 0.82
Core genome haplotype diversity and vacA allelic heterogeneity of Chinese Helicobacter pylori strains. Curr Microbiol (2009) 0.82
Population-associated differences between the phase variable LPS biosynthetic genes of Helicobacter pylori. BMC Microbiol (2006) 0.81
An ecological and conservation perspective on advances in the applied virology of zoonoses. Viruses (2011) 0.81
Genomic Comparison of cag pathogenicity island (PAI)-positive and -negative Helicobacter pylori strains: identification of novel markers for cag PAI-positive strains. Infect Immun (2005) 0.80
Direct maximum parsimony phylogeny reconstruction from genotype data. BMC Bioinformatics (2007) 0.80
DNA sequence analysis of South African Helicobacter pylori Vacuolating Cytotoxin Gene (vacA). Int J Mol Sci (2011) 0.80
Next-generation sequencing and de novo assembly, genome organization, and comparative genomic analyses of the genomes of two Helicobacter pylori isolates from duodenal ulcer patients in India. J Bacteriol (2012) 0.79
Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications. BMC Genomics (2016) 0.79
Population genetic structure and isolation by distance of Helicobacter pylori in Senegal and Madagascar. PLoS One (2014) 0.77
Relatedness of Helicobacter pylori populations to gastric carcinogenesis. World J Gastroenterol (2012) 0.77
Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins. Int J Mol Sci (2012) 0.77
Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. BMC Evol Biol (2014) 0.76
Human Genetic Ancestral Composition Correlates with the Origin of Mycobacterium leprae Strains in a Leprosy Endemic Population. PLoS Negl Trop Dis (2015) 0.76
How old are bacterial pathogens? Proc Biol Sci (2016) 0.76
Cooperation of Gastric Mononuclear Phagocytes with Helicobacter pylori during Colonization. J Immunol (2017) 0.75
Inference of ancestry: constructing hierarchical reference populations and assigning unknown individuals. Hum Genomics (2006) 0.75
Symbiotic associations in the phenotypically-diverse brown alga Saccharina japonica. PLoS One (2012) 0.75
From Evolutionary Advantage to Disease Agents: Forensic Reevaluation of Host-Microbe Interactions and Pathogenicity. Microbiol Spectr (2017) 0.75
Two populations of less-virulent Helicobacter pylori genotypes in Bangladesh. PLoS One (2017) 0.75
Inference of population structure using multilocus genotype data. Genetics (2000) 147.76
Sequence and organization of the human mitochondrial genome. Nature (1981) 57.39
Genetic structure of human populations. Science (2002) 30.91
Mitochondrial DNA and human evolution. Nature (1987) 22.33
Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science (1998) 18.23
Linkage disequilibrium in the human genome. Nature (2001) 17.24
The DNA revolution in population genetics. Trends Genet (1998) 12.19
Traces of human migrations in Helicobacter pylori populations. Science (2003) 11.92
Variations on a theme: cataloging human DNA sequence variation. Science (1997) 10.49
Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci U S A (1995) 9.25
Y chromosome sequence variation and the history of human populations. Nat Genet (2000) 8.34
The application of molecular genetic approaches to the study of human evolution. Nat Genet (2003) 7.44
The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science (2000) 6.57
Intrafamilial clustering of Helicobacter pylori infection. N Engl J Med (1990) 5.09
Microsatellite diversity and the demographic history of modern humans. Proc Natl Acad Sci U S A (1997) 4.96
Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci U S A (2001) 4.80
Recombination and clonal groupings within Helicobacter pylori from different geographical regions. Mol Microbiol (1999) 4.72
Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA. J Mol Evol (1993) 3.88
Differences in genotypes of Helicobacter pylori from different human populations. J Bacteriol (2000) 3.39
Helicobacter pylori infection in Swedish school children: lack of evidence of child-to-child transmission outside the family. Gastroenterology (2001) 3.17
Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22. Proc Natl Acad Sci U S A (2000) 2.67
Helicobacter pylori in North and South America before Columbus. FEBS Lett (2002) 2.57
Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human evolution. Genetics (1994) 2.27
Patterns of prehistoric human mobility in polynesia indicated by mtDNA from the Pacific rat. Proc Natl Acad Sci U S A (1998) 2.22
Biogeographic range expansion into South America by Coccidioides immitis mirrors New World patterns of human migration. Proc Natl Acad Sci U S A (2001) 2.12
Helicobacter pylori among preschool children and their parents: evidence of parent-child transmission. J Infect Dis (1999) 1.96
East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage. Proc Natl Acad Sci U S A (2002) 1.92
Human migrations and population structure: what we know and why it matters. Annu Rev Genomics Hum Genet (2002) 1.81
Polynesian origins: insights from the Y chromosome. Proc Natl Acad Sci U S A (2000) 1.79
Distinguishing migration from isolation using the variance of pairwise differences. Theor Popul Biol (1996) 1.59
Human genetic affinities for Y-chromosome P49a,f/TaqI haplotypes show strong correspondence with linguistics. Am J Hum Genet (1997) 1.58
Responses of endoscopy patients in Ladakh, India, to Helicobacter pylori whole-cell and Cag A antigens. Clin Diagn Lab Immunol (2002) 1.55
African origin of modern humans in East Asia: a tale of 12,000 Y chromosomes. Science (2001) 1.51
Virologic and genetic studies relate Amerind origins to the indigenous people of the Mongolia/Manchuria/southeastern Siberia region. Proc Natl Acad Sci U S A (1994) 1.40
Diversity and age of the four major mtDNA haplogroups, and their implications for the peopling of the New World. Am J Hum Genet (1997) 1.39
Microsatellites provide evidence for Y chromosome diversity among the founders of the New World. Proc Natl Acad Sci U S A (1999) 1.33
Typing of urinary JC virus DNA offers a novel means of tracing human migrations. Proc Natl Acad Sci U S A (1997) 1.30
Concordance of Helicobacter pylori strains within families. J Clin Microbiol (2003) 1.22
Genetic clues to dispersal in human populations: retracing the past from the present. Science (2001) 1.22
Four geographically distinct genotypes of JC virus are prevalent in China and Mongolia: implications for the racial composition of modern China. J Gen Virol (1998) 0.95
Microbiology. Stomachs out of Africa. Science (2003) 0.81
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet (2008) 19.97
Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol (2006) 14.53
Traces of human migrations in Helicobacter pylori populations. Science (2003) 11.92
Inferring weak population structure with the assistance of sample group information. Mol Ecol Resour (2009) 10.81
Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes (2007) 10.11
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet (2003) 9.13
Inference of bacterial microevolution using multilocus sequence data. Genetics (2006) 7.93
Combating antimicrobial resistance: policy recommendations to save lives. Clin Infect Dis (2011) 5.58
Evidence for an epigenetic mechanism by which Hsp90 acts as a capacitor for morphological evolution. Nat Genet (2002) 5.37
Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A (2004) 5.04
Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A (2010) 5.02
Evolutionary history of Salmonella typhi. Science (2006) 5.00
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol (2002) 4.96
Inference of population structure using dense haplotype data. PLoS Genet (2012) 4.87
Accessory gene regulator (agr) locus in geographically diverse Staphylococcus aureus isolates with reduced susceptibility to vancomycin. Antimicrob Agents Chemother (2002) 4.83
Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines. PLoS Genet (2006) 4.65
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet (2010) 4.35
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res (2009) 3.99
Novel cassette-based shuttle vector system for gram-positive bacteria. Appl Environ Microbiol (2004) 3.97
Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci U S A (2008) 3.52
The peopling of the Pacific from a bacterial perspective. Science (2009) 3.14
Population attributable risks of esophageal and gastric cancers. J Natl Cancer Inst (2003) 3.07
Cutaneous anthrax associated with microangiopathic hemolytic anemia and coagulopathy in a 7-month-old infant. JAMA (2002) 2.93
Sequence typing and comparison of population biology of Campylobacter coli and Campylobacter jejuni. J Clin Microbiol (2005) 2.88
Campylobacter genotyping to determine the source of human infection. Clin Infect Dis (2009) 2.70
Inferring human colonization history using a copying model. PLoS Genet (2008) 2.64
A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination? Genome Res (2006) 2.62
Gain and loss of multiple genes during the evolution of Helicobacter pylori. PLoS Genet (2005) 2.61
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic. Genome Res (2013) 2.59
Origin of extant domesticated sunflowers in eastern North America. Nature (2004) 2.59
MALAT-1: a long non-coding RNA and its important 3' end functional motif in colorectal cancer metastasis. Int J Oncol (2011) 2.59
Distinct clones of Yersinia pestis caused the black death. PLoS Pathog (2010) 2.48
Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18. PLoS Genet (2006) 2.47
Staphylococcus aureus accessory gene regulator (agr) group II: is there a relationship to the development of intermediate-level glycopeptide resistance? J Infect Dis (2003) 2.44
Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci. Mol Microbiol (2005) 2.42
Convergence of Campylobacter species: implications for bacterial evolution. Science (2008) 2.42
Prospective study of a serogroup X Neisseria meningitidis outbreak in northern Ghana. J Infect Dis (2002) 2.40
Timing of adjuvant chemotherapy initiation after surgery for stage III colon cancer. Cancer (2006) 2.36
Reduced susceptibility of Staphylococcus aureus to vancomycin and platelet microbicidal protein correlates with defective autolysis and loss of accessory gene regulator (agr) function. Antimicrob Agents Chemother (2005) 2.34
agr function in clinical Staphylococcus aureus isolates. Microbiology (2008) 2.33
Transient interference with staphylococcal quorum sensing blocks abscess formation. Proc Natl Acad Sci U S A (2005) 2.30
Prevalence of agr dysfunction among colonizing Staphylococcus aureus strains. J Infect Dis (2008) 2.29
Host-associated genetic import in Campylobacter jejuni. Emerg Infect Dis (2007) 2.28
Delay of adjuvant chemotherapy initiation following breast cancer surgery among elderly women. Breast Cancer Res Treat (2006) 2.26
Duration of adjuvant chemotherapy for colon cancer and survival among the elderly. J Clin Oncol (2006) 2.26
Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis. Proc Natl Acad Sci U S A (2012) 2.22
Infectious agents and cancer: criteria for a causal relation. Semin Cancer Biol (2004) 2.20
Helicobacter pylori genome evolution during human infection. Proc Natl Acad Sci U S A (2011) 2.15
High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia. J Clin Microbiol (2008) 2.14
Mismatch induced speciation in Salmonella: model and data. Philos Trans R Soc Lond B Biol Sci (2006) 2.11
Immune-related microRNAs are abundant in breast milk exosomes. Int J Biol Sci (2011) 2.11
beta-lactam antibiotics induce the SOS response and horizontal transfer of virulence factors in Staphylococcus aureus. J Bacteriol (2006) 2.07
Peptide signaling in Staphylococcus aureus and other Gram-positive bacteria. Peptides (2004) 2.05
Role of extracellular superoxide dismutase in the mouse angiotensin slow pressor response. Hypertension (2006) 2.05
Phage-mediated intergeneric transfer of toxin genes. Science (2009) 2.01
Effect of mild acid on gene expression in Staphylococcus aureus. J Bacteriol (2004) 1.96
Further validation of a cigarette purchase task for assessing the relative reinforcing efficacy of nicotine in college smokers. Exp Clin Psychopharmacol (2008) 1.95
Synthesis of group A streptococcal virulence factors is controlled by a regulatory RNA molecule. Mol Microbiol (2004) 1.92
Inhibition of rot translation by RNAIII, a key feature of agr function. Mol Microbiol (2006) 1.90
Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet (2010) 1.89
Inference of homologous recombination in bacteria using whole-genome sequences. Genetics (2010) 1.85
Gene therapy for adenosine deaminase-deficient severe combined immune deficiency: clinical comparison of retroviral vectors and treatment plans. Blood (2012) 1.85
Key determinants of receptor activation in the agr autoinducing peptides of Staphylococcus aureus. Biochemistry (2002) 1.84
Parallel independent evolution of pathogenicity within the genus Yersinia. Proc Natl Acad Sci U S A (2014) 1.83
Examining impulsivity as an endophenotype using a behavioral approach: a DRD2 TaqI A and DRD4 48-bp VNTR association study. Behav Brain Funct (2007) 1.83
Serum and urine metabolite profiling reveals potential biomarkers of human hepatocellular carcinoma. Mol Cell Proteomics (2011) 1.81
SaPI mutations affecting replication and transfer and enabling autonomous replication in the absence of helper phage. Mol Microbiol (2007) 1.80
Evolution and population structure of Salmonella enterica serovar Newport. J Bacteriol (2010) 1.79
Focal adhesion kinase is required for intestinal regeneration and tumorigenesis downstream of Wnt/c-Myc signaling. Dev Cell (2010) 1.79
High genetic variability of the agr locus in Staphylococcus species. J Bacteriol (2002) 1.78
Recovery of chloroquine sensitivity and low prevalence of the Plasmodium falciparum chloroquine resistance transporter gene mutation K76T following the discontinuance of chloroquine use in Malawi. Am J Trop Med Hyg (2003) 1.78
Delay in initiating adjuvant radiotherapy following breast conservation surgery and its impact on survival. Int J Radiat Oncol Biol Phys (2006) 1.77
CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections. PLoS One (2012) 1.68
Hybrid Vibrio vulnificus. Emerg Infect Dis (2005) 1.68
Perivascular support of human hematopoietic stem/progenitor cells. Blood (2013) 1.67
CTLA4 blockade broadens the peripheral T-cell receptor repertoire. Clin Cancer Res (2014) 1.66
Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis. BMC Microbiol (2008) 1.65
SaPI operon I is required for SaPI packaging and is controlled by LexA. Mol Microbiol (2007) 1.65
Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing. Environ Microbiol (2011) 1.64
A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet (2010) 1.64
Staphylococcus aureus leucocidin ED contributes to systemic infection by targeting neutrophils and promoting bacterial growth in vivo. Mol Microbiol (2011) 1.64
Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands. Nature (2010) 1.64
Age of the association between Helicobacter pylori and man. PLoS Pathog (2012) 1.62
Recombination and population structure in Salmonella enterica. PLoS Genet (2011) 1.61