Published in Genes Cells on May 01, 2003
Multiple pathways process stalled replication forks. Proc Natl Acad Sci U S A (2004) 3.24
SSB as an organizer/mobilizer of genome maintenance complexes. Crit Rev Biochem Mol Biol (2008) 3.19
Independence of replisomes in Escherichia coli chromosomal replication. Proc Natl Acad Sci U S A (2005) 1.80
Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase. Proc Natl Acad Sci U S A (2009) 1.64
Schizosaccharomyces pombe Swi1, Swi3, and Hsk1 are components of a novel S-phase response pathway to alkylation damage. Mol Cell Biol (2005) 1.37
The Escherichia coli replisome is inherently DNA damage tolerant. Science (2011) 1.36
A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp. J Biol Chem (2008) 1.34
Rescuing stalled or damaged replication forks. Cold Spring Harb Perspect Biol (2013) 1.34
Nascent DNA processing by RecJ favors lesion repair over translesion synthesis at arrested replication forks in Escherichia coli. Proc Natl Acad Sci U S A (2006) 1.25
DNA polymerase delta is highly processive with proliferating cell nuclear antigen and undergoes collision release upon completing DNA. J Biol Chem (2008) 1.22
RuvAB and RecG are not essential for the recovery of DNA synthesis following UV-induced DNA damage in Escherichia coli. Genetics (2004) 1.07
Replication fork stalling and cell cycle arrest in UV-irradiated Escherichia coli. Genes Dev (2007) 1.06
Nucleotide excision repair or polymerase V-mediated lesion bypass can act to restore UV-arrested replication forks in Escherichia coli. J Bacteriol (2005) 1.05
Homologous recombination prevents methylation-induced toxicity in Escherichia coli. Nucleic Acids Res (2006) 1.04
Kinetics of the UV-induced DNA damage response in relation to cell cycle phase. Correlation with DNA replication. Cytometry A (2010) 1.03
Translesion DNA synthesis and mutagenesis in prokaryotes. Cold Spring Harb Perspect Biol (2013) 1.01
Replisome dynamics and use of DNA trombone loops to bypass replication blocks. Mol Biosyst (2008) 0.95
Homologous recombination as a replication fork escort: fork-protection and recovery. Biomolecules (2012) 0.94
RecFOR proteins are essential for Pol V-mediated translesion synthesis and mutagenesis. EMBO J (2006) 0.92
Response of the bacteriophage T4 replisome to noncoding lesions and regression of a stalled replication fork. J Mol Biol (2010) 0.91
Rad8Rad5/Mms2-Ubc13 ubiquitin ligase complex controls translesion synthesis in fission yeast. EMBO J (2010) 0.90
Dynamics of leading-strand lesion skipping by the replisome. Mol Cell (2013) 0.90
Biochemical basis for the essential genetic requirements of RecA and the beta-clamp in Pol V activation. Proc Natl Acad Sci U S A (2009) 0.89
DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts. Nucleic Acids Res (2014) 0.85
Recombinase and translesion DNA polymerase decrease the speed of replication fork progression during the DNA damage response in Escherichia coli cells. Nucleic Acids Res (2015) 0.85
Steric gate variants of UmuC confer UV hypersensitivity on Escherichia coli. J Bacteriol (2009) 0.84
The block of DNA polymerase delta strand displacement activity by an abasic site can be rescued by the concerted action of DNA polymerase beta and Flap endonuclease 1. J Biol Chem (2009) 0.83
Accumulation of abasic sites induces genomic instability in normal human gastric epithelial cells during Helicobacter pylori infection. Oncogenesis (2014) 0.83
Fate of the replisome following arrest by UV-induced DNA damage in Escherichia coli. Proc Natl Acad Sci U S A (2013) 0.81
Selective disruption of the DNA polymerase III α-β complex by the umuD gene products. Nucleic Acids Res (2012) 0.81
Multiple strategies for translesion synthesis in bacteria. Cells (2012) 0.80
Biochemical reconstitution of abasic DNA lesion replication in Xenopus extracts. Nucleic Acids Res (2007) 0.80
T7 replisome directly overcomes DNA damage. Nat Commun (2015) 0.78
Replisome Dynamics during Chromosome Duplication. Ecosal Plus (2009) 0.78
A proposal: Source of single strand DNA that elicits the SOS response. Front Biosci (Landmark Ed) (2013) 0.78
Polymerase manager protein UmuD directly regulates Escherichia coli DNA polymerase III α binding to ssDNA. Nucleic Acids Res (2013) 0.77
Bacterial Proliferation: Keep Dividing and Don't Mind the Gap. PLoS Genet (2015) 0.77
Homologous recombination maintenance of genome integrity during DNA damage tolerance. Mol Cell Oncol (2014) 0.76
A defect in homologous recombination leads to increased translesion synthesis in E. coli. Nucleic Acids Res (2016) 0.76
A novel mode of nuclease action is revealed by the bacterial Mre11/Rad50 complex. Nucleic Acids Res (2015) 0.75
Acute MUS81 depletion leads to replication fork slowing and a constitutive DNA damage response. Oncotarget (2015) 0.75
Processing closely spaced lesions during Nucleotide Excision Repair triggers mutagenesis in E. coli. PLoS Genet (2017) 0.75
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res (2006) 7.93
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol Syst Biol (2006) 5.20
UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex. Cell (2005) 3.85
Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. Mol Cell (2002) 2.81
Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome. Mol Microbiol (2005) 2.77
Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell (2008) 2.47
Preferential cis-syn thymine dimer bypass by DNA polymerase eta occurs with biased fidelity. Nature (2004) 2.40
Transcription-dependent recombination and the role of fork collision in yeast rDNA. Genes Dev (2003) 2.27
The intricate structural chemistry of base excision repair machinery: implications for DNA damage recognition, removal, and repair. DNA Repair (Amst) (2007) 2.26
SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast. Cell (2004) 2.20
The molecular basis of CRL4DDB2/CSA ubiquitin ligase architecture, targeting, and activation. Cell (2011) 2.16
Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair. Mol Cell (2006) 2.13
High-efficiency bypass of DNA damage by human DNA polymerase Q. EMBO J (2004) 2.07
Report from the Working Group of the Molecular Biology Society of Japan for the investigation of fraud in research papers. Genes Cells (2009) 2.02
Palm mutants in DNA polymerases alpha and eta alter DNA replication fidelity and translesion activity. Mol Cell Biol (2004) 1.85
Abundance of ribosomal RNA gene copies maintains genome integrity. Science (2010) 1.75
Translesion synthesis by human DNA polymerase eta across thymine glycol lesions. Biochemistry (2002) 1.71
Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease. Structure (2007) 1.59
Centrin 2 stimulates nucleotide excision repair by interacting with xeroderma pigmentosum group C protein. Mol Cell Biol (2005) 1.58
Replication fork block protein, Fob1, acts as an rDNA region specific recombinator in S. cerevisiae. Genes Cells (2002) 1.56
Structural basis of replication origin recognition by the DnaA protein. Nucleic Acids Res (2003) 1.54
Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions. J Biol Chem (2004) 1.53
A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex. DNA Repair (Amst) (2002) 1.53
Human DNA polymerase N (POLN) is a low fidelity enzyme capable of error-free bypass of 5S-thymine glycol. J Biol Chem (2006) 1.49
Cooperation of the N-terminal Helicase and C-terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks. J Biol Chem (2004) 1.49
A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin. J Biol Chem (2008) 1.46
Distinct roles of DNA polymerases delta and epsilon at the replication fork in Xenopus egg extracts. Genes Cells (2004) 1.41
Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family. J Biol Chem (2005) 1.39
DDB1-DDB2 (xeroderma pigmentosum group E) protein complex recognizes a cyclobutane pyrimidine dimer, mismatches, apurinic/apyrimidinic sites, and compound lesions in DNA. J Biol Chem (2005) 1.38
The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes. Genes Dev (2007) 1.37
Two-step recognition of DNA damage for mammalian nucleotide excision repair: Directional binding of the XPC complex and DNA strand scanning. Mol Cell (2009) 1.37
Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes. Proc Natl Acad Sci U S A (2009) 1.36
Identification of cryptochrome DASH from vertebrates. Genes Cells (2004) 1.36
A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp. J Biol Chem (2008) 1.34
Generic expansion of the substrate spectrum of a DNA polymerase by directed evolution. Nat Biotechnol (2004) 1.34
Protein associations in DnaA-ATP hydrolysis mediated by the Hda-replicase clamp complex. J Biol Chem (2004) 1.34
A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo. J Biol Chem (2002) 1.32
Regulating DNA replication in bacteria. Cold Spring Harb Perspect Biol (2013) 1.31
Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC. J Biol Chem (2007) 1.31
MUTYH-null mice are susceptible to spontaneous and oxidative stress induced intestinal tumorigenesis. Cancer Res (2007) 1.30
An oxidized purine nucleoside triphosphatase, MTH1, suppresses cell death caused by oxidative stress. J Biol Chem (2003) 1.30
Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal. Mol Microbiol (2008) 1.29
DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication. J Biol Chem (2004) 1.27
The XPC-HR23B complex displays high affinity and specificity for damaged DNA in a true-equilibrium fluorescence assay. Biochemistry (2002) 1.26
Arabidopsis TEBICHI, with helicase and DNA polymerase domains, is required for regulated cell division and differentiation in meristems. Plant Cell (2006) 1.26
Specific genomic sequences of E. coli promote replicational initiation by directly reactivating ADP-DnaA. Genes Dev (2009) 1.23
The cis element and factors required for condensin recruitment to chromosomes. Mol Cell (2009) 1.22
Structural analysis of aberrant chromosomes that occur spontaneously in diploid Saccharomyces cerevisiae: retrotransposon Ty1 plays a crucial role in chromosomal rearrangements. Genetics (2002) 1.22
DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity. Biochem Cell Biol (2010) 1.21
DnaA structure, function, and dynamics in the initiation at the chromosomal origin. Plasmid (2009) 1.19
Escherichia coli with a linear genome. EMBO Rep (2007) 1.16
REV1 restrains DNA polymerase zeta to ensure frame fidelity during translesion synthesis of UV photoproducts in vivo. Nucleic Acids Res (2008) 1.15
Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair. Nucleic Acids Res (2003) 1.14
Modes of overinitiation, dnaA gene expression, and inhibition of cell division in a novel cold-sensitive hda mutant of Escherichia coli. J Bacteriol (2008) 1.14
DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading. J Biol Chem (2009) 1.12
Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation. Mol Microbiol (2006) 1.11
Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation. Nucleic Acids Res (2011) 1.10
Evidence for interplay among yeast replicative DNA polymerases alpha, delta and epsilon from studies of exonuclease and polymerase active site mutations. BMC Biol (2004) 1.08
In vivo destabilization and functional defects of the xeroderma pigmentosum C protein caused by a pathogenic missense mutation. Mol Cell Biol (2007) 1.06
Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex. Genes Cells (2004) 1.06
Simultaneous disruption of two DNA polymerases, Polη and Polζ, in Avian DT40 cells unmasks the role of Polη in cellular response to various DNA lesions. PLoS Genet (2010) 1.06
Xeroderma pigmentosum group C protein interacts physically and functionally with thymine DNA glycosylase. EMBO J (2003) 1.05
Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting. Proc Natl Acad Sci U S A (2005) 1.05
A role for DNA polymerase beta in mutagenic UV lesion bypass. J Biol Chem (2002) 1.04
Sequence context-dependent replication of DNA templates containing UV-induced lesions by human DNA polymerase iota. DNA Repair (Amst) (2003) 1.03
Roles of the polymerase and BRCT domains of Rev1 protein in translesion DNA synthesis in yeast in vivo. Mutat Res (2005) 1.03
A molecular basis for the selective recognition of 2-hydroxy-dATP and 8-oxo-dGTP by human MTH1. J Biol Chem (2001) 1.02
Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site. Biochem Biophys Res Commun (2005) 1.02
Impact of reactive oxygen species on spontaneous mutagenesis in Escherichia coli. Genes Cells (2006) 1.02
Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates. J Biol Chem (2004) 1.01
Blockage of RNA polymerase II at a cyclobutane pyrimidine dimer and 6-4 photoproduct. Biochem Biophys Res Commun (2004) 0.99
DNA binding properties of human DNA polymerase eta: implications for fidelity and polymerase switching of translesion synthesis. Genes Cells (2004) 0.99
The exceptionally tight affinity of DnaA for ATP/ADP requires a unique aspartic acid residue in the AAA+ sensor 1 motif. Mol Microbiol (2006) 0.98
DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation. Proc Natl Acad Sci U S A (2012) 0.98
ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis. EMBO Rep (2013) 0.97
Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA Box VI and VII motifs. Mol Microbiol (2010) 0.97
Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis. J Biol Chem (2008) 0.97
Glucose degradation products (GDP) retard remesothelialization independently of D-glucose concentration. Kidney Int (2003) 0.97
Double-stranded DNA binding, an unusual property of DNA polymerase epsilon, promotes epigenetic silencing in Saccharomyces cerevisiae. J Biol Chem (2006) 0.96
Loss of Hda activity stimulates replication initiation from I-box, but not R4 mutant origins in Escherichia coli. Mol Microbiol (2008) 0.96
Spontaneous mutagenesis associated with nucleotide excision repair in Escherichia coli. Genes Cells (2008) 0.95
Lesion bypass by S. cerevisiae Pol ζ alone. DNA Repair (Amst) (2011) 0.95
Involvement of RAD9-dependent damage checkpoint control in arrest of cell cycle, induction of cell death, and chromosome instability caused by defects in origin recognition complex in Saccharomyces cerevisiae. Eukaryot Cell (2002) 0.95
Replication-dependent recruitment of the beta-subunit of DNA polymerase III from cytosolic spaces to replication forks in Escherichia coli. J Bacteriol (2002) 0.95
RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice. Plant Cell Physiol (2005) 0.95
Mutational specificity of mice defective in the MTH1 and/or the MSH2 genes. DNA Repair (Amst) (2002) 0.95
RNA polymerase I transcription obstructs condensin association with 35S rRNA coding regions and can cause contraction of long repeat in Saccharomyces cerevisiae. Genes Cells (2007) 0.95
Quantitative analysis of isolated and clustered DNA damage induced by gamma-rays, carbon ion beams, and iron ion beams. J Radiat Res (2008) 0.94
Chemical synthesis and translesion replication of a cis-syn cyclobutane thymine-uracil dimer. Nucleic Acids Res (2004) 0.94
Human Nei-like protein NEIL3 has AP lyase activity specific for single-stranded DNA and confers oxidative stress resistance in Escherichia coli mutant. Genes Cells (2008) 0.94
Double-stranded DNA binding properties of Saccharomyces cerevisiae DNA polymerase epsilon and of the Dpb3p-Dpb4p subassembly. Genes Cells (2003) 0.94
Condensin loaded onto the replication fork barrier site in the rRNA gene repeats during S phase in a FOB1-dependent fashion to prevent contraction of a long repetitive array in Saccharomyces cerevisiae. Mol Cell Biol (2006) 0.94
The oxidative DNA glycosylases of Mycobacterium tuberculosis exhibit different substrate preferences from their Escherichia coli counterparts. DNA Repair (Amst) (2009) 0.93
Experimental proof of contamination of blood components by (1-->3)-beta-D-glucan caused by filtration with cellulose filters in the manufacturing process. J Artif Organs (2003) 0.93
Human endonuclease V is a ribonuclease specific for inosine-containing RNA. Nat Commun (2013) 0.93
Mammalian 5-formyluracil-DNA glycosylase. 1. Identification and characterization of a novel activity that releases 5-formyluracil from DNA. Biochemistry (2003) 0.93
The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner. Genes Cells (2006) 0.92
Hyper-processive and slower DNA chain elongation catalysed by DNA polymerase III holoenzyme purified from the dnaE173 mutator mutant of Escherichia coli. Genes Cells (2002) 0.91