Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion.

PubWeight™: 0.89‹?›

🔗 View Article (PMID 15667207)

Published in Biochemistry on February 01, 2005

Authors

Tsugumi Nakanishi1, Toru Nakatsu, Makoto Matsuoka, Kanzo Sakata, Hiroaki Kato

Author Affiliations

1: Kinetic Crystallography Research Team, Membrane Dynamics Research Group, RIKEN Harima Institute at SPring-8, 1-1-1 Kouto, Mikazuki-cho, Sayo-gun, Hyogo 679-5148, Japan.

Articles by these authors

GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Nature (2005) 5.60

Cytokinin oxidase regulates rice grain production. Science (2005) 5.60

Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Science (2003) 4.44

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature (2009) 3.74

Structural basis for the spectral difference in luciferase bioluminescence. Nature (2006) 3.60

The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei. Plant Cell (2002) 3.41

An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Plant Physiol (2004) 3.32

OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat Genet (2010) 3.23

Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice. Nat Biotechnol (2005) 2.89

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci U S A (2007) 2.82

Identification and characterization of Arabidopsis gibberellin receptors. Plant J (2006) 2.82

The OsTB1 gene negatively regulates lateral branching in rice. Plant J (2003) 2.69

A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450. Plant Cell (2003) 2.58

Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell (2005) 2.56

Structural basis for gibberellin recognition by its receptor GID1. Nature (2008) 2.54

Mutations in mitochondrial carrier family gene SLC25A38 cause nonsyndromic autosomal recessive congenital sideroblastic anemia. Nat Genet (2009) 2.37

A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length. Plant Cell (2005) 2.30

Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome. Nat Genet (2011) 2.18

Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin. Plant Cell (2007) 2.14

Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. Plant J (2002) 2.14

Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein. Nat Struct Mol Biol (2004) 2.08

Arabidopsis CYP707As encode (+)-abscisic acid 8'-hydroxylase, a key enzyme in the oxidative catabolism of abscisic acid. Plant Physiol (2004) 2.08

The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Plant Cell (2004) 2.08

Mutations in centrosomal protein CEP152 in primary microcephaly families linked to MCPH4. Am J Hum Genet (2010) 2.05

Gibberellin receptor and its role in gibberellin signaling in plants. Annu Rev Plant Biol (2007) 2.05

A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Plant Mol Biol (2004) 2.00

Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. Plant Cell Physiol (2009) 1.99

Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants? Plant J (2003) 1.87

Genetic manipulation of gibberellin metabolism in transgenic rice. Nat Biotechnol (2003) 1.83

Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice. Plant Cell Physiol (2008) 1.77

Molecular cloning and characterization of Bifidobacterium bifidum 1,2-alpha-L-fucosidase (AfcA), a novel inverting glycosidase (glycoside hydrolase family 95). J Bacteriol (2004) 1.72

Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development. Plant Cell (2003) 1.71

Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB. Plant Cell (2009) 1.65

Auxin biosynthesis by the YUCCA genes in rice. Plant Physiol (2007) 1.62

Identifying and exploiting grain yield genes in rice. Curr Opin Plant Biol (2008) 1.62

The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone. Plant Cell (2005) 1.60

The GID1-mediated gibberellin perception mechanism is conserved in the Lycophyte Selaginella moellendorffii but not in the Bryophyte Physcomitrella patens. Plant Cell (2007) 1.52

Identification and molecular cloning of a novel glycoside hydrolase family of core 1 type O-glycan-specific endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum. J Biol Chem (2005) 1.51

Identification, isolation and pyramiding of quantitative trait loci for rice breeding. Trends Plant Sci (2006) 1.51

White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB). Plant J (2005) 1.50

Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A (2011) 1.50

GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Plant J (2006) 1.48

The small interfering RNA production pathway is required for shoot meristem initiation in rice. Proc Natl Acad Sci U S A (2007) 1.46

C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis. Plant Cell (2006) 1.44

A role for the ubiquitin-26S-proteasome pathway in gibberellin signaling. Trends Plant Sci (2003) 1.42

Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem. Plant J (2003) 1.42

Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice. Plant Physiol (2006) 1.41

GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice. Plant J (2004) 1.41

Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol (2006) 1.39

GID1-mediated gibberellin signaling in plants. Trends Plant Sci (2008) 1.38

Prevalence of dry eye disease and its risk factors in visual display terminal users: the Osaka study. Am J Ophthalmol (2013) 1.37

Genetic approaches to crop improvement: responding to environmental and population changes. Nat Rev Genet (2008) 1.36

The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice. Plant Physiol (2006) 1.32

Gibberellin regulates pollen viability and pollen tube growth in rice. Plant Cell (2007) 1.31

The role of QTLs in the breeding of high-yielding rice. Trends Plant Sci (2011) 1.31

Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal. Plant J (2007) 1.31

A protocol for Agrobacterium-mediated transformation in rice. Nat Protoc (2006) 1.31

OryzaExpress: an integrated database of gene expression networks and omics annotations in rice. Plant Cell Physiol (2010) 1.30

The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis. Plant J (2006) 1.30

Crystal structure of a MARCKS peptide containing the calmodulin-binding domain in complex with Ca2+-calmodulin. Nat Struct Biol (2003) 1.30

New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield. Nat Commun (2010) 1.30

Various spatiotemporal expression profiles of anther-expressed genes in rice. Plant Cell Physiol (2008) 1.29

Dissection of the phosphorylation of rice DELLA protein, SLENDER RICE1. Plant Cell Physiol (2005) 1.27

Characterization of a rice gene family encoding type-A diterpene cyclases. Biosci Biotechnol Biochem (2006) 1.26

A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proc Natl Acad Sci U S A (2009) 1.26

Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice. Plant Cell (2010) 1.25

Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice. Mol Genet Genomics (2010) 1.24

Mitochondrial gene in the nuclear genome induces reproductive barrier in rice. Proc Natl Acad Sci U S A (2010) 1.22

Scopoletin is biosynthesized via ortho-hydroxylation of feruloyl CoA by a 2-oxoglutarate-dependent dioxygenase in Arabidopsis thaliana. Plant J (2008) 1.22

Crystal structure of a myristoylated CAP-23/NAP-22 N-terminal domain complexed with Ca2+/calmodulin. EMBO J (2004) 1.22

Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice. Mol Genet Genomics (2008) 1.19

Generating high-yielding varieties by genetic manipulation of plant architecture. Curr Opin Biotechnol (2004) 1.19

Accumulation of coumarins in Arabidopsis thaliana. Phytochemistry (2006) 1.19

Mutation in pyrroline-5-carboxylate reductase 1 gene in families with cutis laxa type 2. Am J Hum Genet (2009) 1.17

Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant. Plant Cell (2008) 1.16

Mutation in the gene encoding ubiquitin ligase LRSAM1 in patients with Charcot-Marie-Tooth disease. PLoS Genet (2010) 1.15

Expression of novel rice gibberellin 2-oxidase gene is under homeostatic regulation by biologically active gibberellins. J Plant Res (2003) 1.15

The SCARECROW gene's role in asymmetric cell divisions in rice plants. Plant J (2003) 1.14

Structural basis for gating mechanisms of a eukaryotic P-glycoprotein homolog. Proc Natl Acad Sci U S A (2014) 1.14

Diterpene cyclases responsible for the biosynthesis of phytoalexins, momilactones A, B, and oryzalexins A-F in rice. Biosci Biotechnol Biochem (2004) 1.14

Early removal of drains and the incidence of seroma after breast surgery. Breast Cancer (2013) 1.13

Gibberellin signalling pathway. Curr Opin Plant Biol (2003) 1.13

Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems. Proc Natl Acad Sci U S A (2005) 1.12

Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum. EMBO Rep (2004) 1.12

Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis. Proc Natl Acad Sci U S A (2004) 1.11

Arabidopsis CYP90B1 catalyses the early C-22 hydroxylation of C27, C28 and C29 sterols. Plant J (2006) 1.10

The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity. Plant J (2012) 1.09

Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling. Plant Physiol (2005) 1.09

A direct repeat of E-box-like elements is required for cell-autonomous circadian rhythm of clock genes. BMC Mol Biol (2008) 1.09

OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice. Plant J (2002) 1.08