Published in J Biol Chem on October 27, 2005
Differential regulation and substrate preferences in two peptide transporters of Saccharomyces cerevisiae. Eukaryot Cell (2007) 1.34
Pre-microRNA and mature microRNA in human mitochondria. PLoS One (2011) 1.29
Saccharomyces cerevisiae Sit4 phosphatase is active irrespective of the nitrogen source provided, and Gln3 phosphorylation levels become nitrogen source-responsive in a sit4-deleted strain. J Biol Chem (2006) 1.23
The retrograde response: when mitochondrial quality control is not enough. Biochim Biophys Acta (2012) 1.18
Tor pathway control of the nitrogen-responsive DAL5 gene bifurcates at the level of Gln3 and Gat1 regulation in Saccharomyces cerevisiae. J Biol Chem (2008) 1.17
The yeast retrograde response as a model of intracellular signaling of mitochondrial dysfunction. Front Physiol (2012) 1.14
Recent advances in nitrogen regulation: a comparison between Saccharomyces cerevisiae and filamentous fungi. Eukaryot Cell (2008) 1.14
Mutations in the Arabidopsis homolog of LST8/GβL, a partner of the target of Rapamycin kinase, impair plant growth, flowering, and metabolic adaptation to long days. Plant Cell (2012) 1.05
Aup1-mediated regulation of Rtg3 during mitophagy. J Biol Chem (2009) 1.05
Rapamycin-induced Gln3 dephosphorylation is insufficient for nuclear localization: Sit4 and PP2A phosphatases are regulated and function differently. J Biol Chem (2008) 1.05
Nitrogen catabolite repression-sensitive transcription as a readout of Tor pathway regulation: the genetic background, reporter gene and GATA factor assayed determine the outcomes. Genetics (2008) 1.02
Distinct phosphatase requirements and GATA factor responses to nitrogen catabolite repression and rapamycin treatment in Saccharomyces cerevisiae. J Biol Chem (2010) 1.01
Molecular mechanisms of Saccharomyces cerevisiae stress adaptation and programmed cell death in response to acetic acid. Front Microbiol (2013) 1.01
Multiple signals converge on a differentiation MAPK pathway. PLoS Genet (2010) 1.01
Nitrogen-responsive regulation of GATA protein family activators Gln3 and Gat1 occurs by two distinct pathways, one inhibited by rapamycin and the other by methionine sulfoximine. J Biol Chem (2011) 1.00
Comparing the yeast retrograde response and NF-κB stress responses: implications for aging. Aging Cell (2010) 0.96
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses. J Biol Chem (2012) 0.96
Identification of a small molecule yeast TORC1 inhibitor with a multiplex screen based on flow cytometry. ACS Chem Biol (2012) 0.95
Ammonia-specific regulation of Gln3 localization in Saccharomyces cerevisiae by protein kinase Npr1. J Biol Chem (2006) 0.93
Mitochondrial stress signaling in longevity: a new role for mitochondrial function in aging. Redox Biol (2014) 0.93
Formalin can alter the intracellular localization of some transcription factors in Saccharomyces cerevisiae. FEMS Yeast Res (2008) 0.90
The retrograde response: a conserved compensatory reaction to damage from within and from without. Prog Mol Biol Transl Sci (2014) 0.88
Yeast as a tool to study signaling pathways in mitochondrial stress response and cytoprotection. ScientificWorldJournal (2012) 0.85
TORC2 signaling is antagonized by protein phosphatase 2A and the Far complex in Saccharomyces cerevisiae. Genetics (2012) 0.83
Mitochondria to nucleus signaling and the role of ceramide in its integration into the suite of cell quality control processes during aging. Ageing Res Rev (2014) 0.80
Mitochondrial Retrograde Signaling: Triggers, Pathways, and Outcomes. Oxid Med Cell Longev (2015) 0.79
High-Throughput Identification of Cis-Regulatory Rewiring Events in Yeast. Mol Biol Evol (2015) 0.78
Role of Mitochondrial Retrograde Pathway in Regulating Ethanol-Inducible Filamentous Growth in Yeast. Front Physiol (2017) 0.75
Histone H3 and TORC1 prevent organelle dysfunction and cell death by promoting nuclear retention of HMGB proteins. Epigenetics Chromatin (2016) 0.75
How do yeast sense mitochondrial dysfunction? Microb Cell (2016) 0.75
Loss of wobble uridine modification in tRNA anticodons interferes with TOR pathway signaling. Microb Cell (2014) 0.75
Prepublication data sharing. Nature (2009) 12.24
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Res (2005) 5.59
The European Bioinformatics Institute's data resources: towards systems biology. Nucleic Acids Res (2005) 4.90
The European dimension for the mouse genome mutagenesis program. Nat Genet (2004) 3.84
Mitochondrial retrograde signaling. Annu Rev Genet (2006) 3.75
Extending CATH: increasing coverage of the protein structure universe and linking structure with function. Nucleic Acids Res (2010) 2.93
The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res (2008) 2.92
Construction, visualisation, and clustering of transcription networks from microarray expression data. PLoS Comput Biol (2007) 2.73
Quantifying the similarities within fold space. J Mol Biol (2002) 2.65
The organization and inheritance of the mitochondrial genome. Nat Rev Genet (2005) 2.57
The European Bioinformatics Institute's data resources. Nucleic Acids Res (2009) 2.55
Protein function annotation by homology-based inference. Genome Biol (2009) 2.20
Aconitase couples metabolic regulation to mitochondrial DNA maintenance. Science (2005) 2.01
Structural and chemical profiling of the human cytosolic sulfotransferases. PLoS Biol (2007) 1.90
The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space. Structure (2009) 1.62
The CCPN project: an interim report on a data model for the NMR community. Nat Struct Biol (2002) 1.58
Conformational changes observed in enzyme crystal structures upon substrate binding. J Mol Biol (2004) 1.56
Recognizing the fold of a protein structure. Bioinformatics (2003) 1.45
Minimum information about a bioactive entity (MIABE). Nat Rev Drug Discov (2011) 1.44
Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans. Mech Ageing Dev (2006) 1.41
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. Bioinformatics (2008) 1.36
Mitochondrial nucleoids undergo remodeling in response to metabolic cues. J Cell Sci (2008) 1.35
Global transcription analysis of Krebs tricarboxylic acid cycle mutants reveals an alternating pattern of gene expression and effects on hypoxic and oxidative genes. Mol Biol Cell (2003) 1.26
Retrograde signaling is regulated by the dynamic interaction between Rtg2p and Mks1p. Mol Cell (2003) 1.24
Evolutionary tinkering with mitochondrial nucleoids. Trends Cell Biol (2007) 1.20
RTG-dependent mitochondria-to-nucleus signaling is regulated by MKS1 and is linked to formation of yeast prion [URE3]. Mol Biol Cell (2002) 1.18
The European Bioinformatics Institute's data resources 2014. Nucleic Acids Res (2013) 1.17
Activation of the SPS amino acid-sensing pathway in Saccharomyces cerevisiae correlates with the phosphorylation state of a sensor component, Ptr3. Mol Cell Biol (2007) 1.07
The little elongation complex regulates small nuclear RNA transcription. Mol Cell (2011) 1.06
A function for the mitochondrial chaperonin Hsp60 in the structure and transmission of mitochondrial DNA nucleoids in Saccharomyces cerevisiae. J Cell Biol (2003) 1.02
Cross-hybridization on PCR-spotted microarrays. IEEE Eng Med Biol Mag (2002) 1.01
Annotations for all by all - the BioSapiens network. Genome Biol (2009) 1.00
The metastasis-promoting phosphatase PRL-3 shows activity toward phosphoinositides. Biochemistry (2011) 1.00
Yeast aconitase binds and provides metabolically coupled protection to mitochondrial DNA. Proc Natl Acad Sci U S A (2007) 0.99
Mitochondrial DNA instability mutants of the bifunctional protein Ilv5p have altered organization in mitochondria and are targeted for degradation by Hsp78 and the Pim1p protease. J Biol Chem (2002) 0.96
Yersinia effector YopJ inhibits yeast MAPK signaling pathways by an evolutionarily conserved mechanism. J Biol Chem (2002) 0.95
A novel degron-mediated degradation of the RTG pathway regulator, Mks1p, by SCFGrr1. Mol Biol Cell (2005) 0.94
The new science of ageing. Philos Trans R Soc Lond B Biol Sci (2011) 0.94
Elucidating human phosphatase-substrate networks. Sci Signal (2013) 0.93
Women in science. Genome Biol (2012) 0.92
ATO3 encoding a putative outward ammonium transporter is an RTG-independent retrograde responsive gene regulated by GCN4 and the Ssy1-Ptr3-Ssy5 amino acid sensor system. J Biol Chem (2003) 0.90
Mutational bisection of the mitochondrial DNA stability and amino acid biosynthetic functions of ilv5p of budding yeast. Genetics (2002) 0.89
Yeast growth in raffinose results in resistance to acetic-acid induced programmed cell death mostly due to the activation of the mitochondrial retrograde pathway. Biochim Biophys Acta (2013) 0.87
Erratum to "Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans" [Mech. Ageing Dev. 127 (5) (2006) 458-472]. Mech Ageing Dev (2006) 0.83
TORC2 signaling is antagonized by protein phosphatase 2A and the Far complex in Saccharomyces cerevisiae. Genetics (2012) 0.83
Interaction between Rtg2p and Mks1p in the regulation of the RTG pathway of Saccharomyces cerevisiae. Gene (2005) 0.83
Differential regulation of transcription factors Stp1 and Stp2 in the Ssy1-Ptr3-Ssy5 amino acid sensing pathway. J Biol Chem (2010) 0.82
Endothelial-monocyte activating polypeptide II disrupts alveolar epithelial type II to type I cell transdifferentiation. Respir Res (2012) 0.81
Conformational change in substrate binding, catalysis and product release: an open and shut case? FEBS Lett (2004) 0.81
The conserved translocase Tim17 prevents mitochondrial DNA loss. Hum Mol Genet (2008) 0.80
Tiered assembly of the yeast Far3-7-8-9-10-11 complex at the endoplasmic reticulum. J Biol Chem (2013) 0.80
Mitochondrial DNA instability in cells lacking aconitase correlates with iron citrate toxicity. Oxid Med Cell Longev (2013) 0.79
SIT4 regulation of Mig1p-mediated catabolite repression in Saccharomyces cerevisiae. FEBS Lett (2007) 0.78
Cell proliferation and migration are modulated by Cdk-1-phosphorylated endothelial-monocyte activating polypeptide II. PLoS One (2012) 0.78
Alterations of O-glycosylation, cell wall, and mitochondrial metabolism in Kluyveromyces lactis cells defective in KlPmr1p, the Golgi Ca(2+)-ATPase. Biochem Biophys Res Commun (2004) 0.76
The new science of ageing. Philos Trans R Soc Lond B Biol Sci (2015) 0.75
Crosslinking of proteins to mtDNA. Methods Mol Biol (2002) 0.75