Published in Nucleic Acids Res on December 14, 2006
The functional role of long non-coding RNA in human carcinomas. Mol Cancer (2011) 6.37
The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biol (2008) 2.43
LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res (2012) 2.40
NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res (2013) 2.37
FASTR3D: a fast and accurate search tool for similar RNA 3D structures. Nucleic Acids Res (2009) 1.06
From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease. Endocr Rev (2014) 0.98
Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity. BMC Genomics (2012) 0.97
Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing. Front Genet (2011) 0.94
Identification of expressed and conserved human noncoding RNAs. RNA (2013) 0.89
Microarray-based transcriptomic analysis of differences between long-term gregarious and solitarious desert locusts. PLoS One (2011) 0.87
The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression. Nucleic Acids Res (2011) 0.85
Systematic identification of 3'-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons. Philos Trans R Soc Lond B Biol Sci (2014) 0.83
Elephant transcriptome provides insights into the evolution of eutherian placentation. Genome Biol Evol (2012) 0.79
Online tools for bioinformatics analyses in nutrition sciences. Adv Nutr (2012) 0.78
High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research. BMC Genomics (2013) 0.78
Bioinformatics and computational biology in Poland. PLoS Comput Biol (2013) 0.77
Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum. BMC Genomics (2013) 0.77
Long noncoding RNAs in prostate cancer: mechanisms and applications. Mol Cell Oncol (2014) 0.76
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
The human genome browser at UCSC. Genome Res (2002) 168.23
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
The UCSC Genome Browser Database. Nucleic Acids Res (2003) 32.84
Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res (2005) 25.49
GenBank. Nucleic Acids Res (2005) 19.25
Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet (2003) 7.98
An RNA gene expressed during cortical development evolved rapidly in humans. Nature (2006) 7.23
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J (2001) 5.70
Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep (2001) 4.74
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Nat Biotechnol (2005) 4.68
RNAdb--a comprehensive mammalian noncoding RNA database. Nucleic Acids Res (2005) 2.84
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. PLoS Genet (2006) 2.48
The amazing complexity of the human transcriptome. Eur J Hum Genet (2005) 1.74
A new frontier for molecular medicine: noncoding RNAs. Biochim Biophys Acta (2005) 1.31
Noncoding regulatory RNAs database. Nucleic Acids Res (2003) 1.29
Collection of mRNA-like non-coding RNAs. Nucleic Acids Res (1999) 1.22
Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22. Genome Res (2005) 0.94
Regulation by RNA. Int Rev Cytol (2003) 0.87
5S Ribosomal RNA Database. Nucleic Acids Res (2002) 5.95
Design of antisense oligonucleotides stabilized by locked nucleic acids. Nucleic Acids Res (2002) 2.58
Local RNA target structure influences siRNA efficacy: systematic analysis of intentionally designed binding regions. J Mol Biol (2005) 1.86
Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity. J Exp Med (2012) 1.57
Application of locked nucleic acids to improve aptamer in vivo stability and targeting function. Nucleic Acids Res (2004) 1.54
Comparison of different antisense strategies in mammalian cells using locked nucleic acids, 2'-O-methyl RNA, phosphorothioates and small interfering RNA. Nucleic Acids Res (2003) 1.42
Probing the SELEX process with next-generation sequencing. PLoS One (2011) 1.34
A new frontier for molecular medicine: noncoding RNAs. Biochim Biophys Acta (2005) 1.31
Noncoding regulatory RNAs database. Nucleic Acids Res (2003) 1.29
5 S rRNA: structure and interactions. Biochem J (2003) 1.20
A streamlined protocol for emulsion polymerase chain reaction and subsequent purification. Anal Biochem (2010) 1.15
RNA cleaving '10-23' DNAzymes with enhanced stability and activity. Nucleic Acids Res (2003) 1.14
Comparative study of DNA enzymes and ribozymes against the same full-length messenger RNA of the vanilloid receptor subtype I. J Biol Chem (2001) 1.13
Cellular uptake and localization of a Cy3-labeled siRNA specific for the serine/threonine kinase Pim-1. Oligonucleotides (2003) 1.10
Silencing of vanilloid receptor TRPV1 by RNAi reduces neuropathic and visceral pain in vivo. Biochem Biophys Res Commun (2006) 1.09
Sequence requirements in the catalytic core of the "10-23" DNA enzyme. J Biol Chem (2002) 1.08
The first crystal structure of an RNA racemate. Acta Crystallogr D Biol Crystallogr (2006) 1.08
Noncoding RNA transcripts. J Appl Genet (2003) 1.06
The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins. Protein Expr Purif (2004) 1.03
Investigation of TRPV1 loss-of-function phenotypes in transgenic shRNA expressing and knockout mice. Mol Cell Neurosci (2007) 0.99
A DNA aptamer with high affinity and specificity for therapeutic anthracyclines. Anal Biochem (2007) 0.98
Searching sequence space for high-affinity binding peptides using ribosome display. J Mol Biol (2003) 0.97
Beyond the proteome: non-coding regulatory RNAs. Genome Biol (2002) 0.96
Gaining target access for deoxyribozymes. J Mol Biol (2004) 0.95
Selection of RNA aptamers to the Alzheimer's disease amyloid peptide. Biochem Biophys Res Commun (2002) 0.95
Detection of oncofetal h19 RNA in rheumatoid arthritis synovial tissue. Am J Pathol (2003) 0.94
Structure of mistletoe lectin I from Viscum album in complex with the phytohormone zeatin. Biochim Biophys Acta (2008) 0.94
A calibrated diversity assay for nucleic acid libraries using DiStRO--a Diversity Standard of Random Oligonucleotides. Nucleic Acids Res (2009) 0.94
Antinociceptive effect of antisense oligonucleotides against the vanilloid receptor VR1/TRPV1. Neurochem Int (2006) 0.94
Analysis of structure and function of tenascin-C. Int J Biochem Cell Biol (2006) 0.92
Evaluation of the dynamic structure of DsrA RNA from E. coli and its functional consequences. J Biochem (2006) 0.90
The 1.2A crystal structure of an E. coli tRNASer)acceptor stem microhelix reveals two magnesium binding sites. Biochem Biophys Res Commun (2009) 0.90
Semi-automated selection of DNA aptamers using magnetic particle handling. Biotechniques (2007) 0.89
Deletion analysis in the catalytic region of the 10-23 DNA enzyme. FEBS Lett (2005) 0.88
The crystal structure of an 'All Locked' nucleic acid duplex. Nucleic Acids Res (2010) 0.87
Regulation by RNA. Int Rev Cytol (2003) 0.87
Spiegelzymes: sequence specific hydrolysis of L-RNA with mirror image hammerhead ribozymes and DNAzymes. PLoS One (2013) 0.87
Suppression of human brain tumor with interference RNA specific for tenascin-C. Cancer Biol Ther (2006) 0.87
Promising human brain tumors therapy with interference RNA intervention (iRNAi). Cancer Biol Ther (2010) 0.87
A nature of conformational changes of yeast tRNA(Phe). High hydrostatic pressure effects. Int J Biol Macromol (2005) 0.87
Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor. Biol Chem (2005) 0.87
Maintaining inhibition: siRNA double expression vectors against coxsackieviral RNAs. J Mol Biol (2004) 0.86
Biosensor-based on-site explosives detection using aptamers as recognition elements. Anal Bioanal Chem (2008) 0.85
Global changes in DNA methylation in seeds and seedlings of Pyrus communis after seed desiccation and storage. PLoS One (2013) 0.85
Structure prediction, evolution and ligand interaction of CHASE domain. FEBS Lett (2004) 0.85
Palindromes in proteins. J Protein Chem (2003) 0.83
A new family of ferritin genes from Lupinus luteus--comparative analysis of plant ferritins, their gene structure, and evolution. Mol Biol Evol (2010) 0.83
Highly active low magnesium hammerhead ribozyme. J Biochem (2009) 0.83
A multivariate analysis of patients with brain tumors treated with ATN-RNA. Acta Pol Pharm (2009) 0.82
Organelle trafficking of chimeric ribozymes and genetic manipulation of mitochondria. Nucleic Acids Res (2011) 0.82
The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity. Mol Biol Rep (2008) 0.82
Squalene monooxygenase - a target for hypercholesterolemic therapy. Biol Chem (2011) 0.82
RNA regulation in mammals. Ann N Y Acad Sci (2006) 0.81
Structural similarity of E. coli 5S rRNA in solution and within the ribosome. Biopolymers (2004) 0.81
On the importance of the primer activation signal for initiation of tRNA(lys3)-primed reverse transcription of the HIV-1 RNA genome. Nucleic Acids Res (2003) 0.81
Phloretamide, an apple phenolic compound, activates the Nrf2/ARE pathway in human hepatocytes. Food Chem Toxicol (2012) 0.81
Crystallization and preliminary X-ray diffraction analysis of a tRNASer acceptor-stem microhelix. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.81
Evaluation of bacterial RNase P RNA as a drug target. Chembiochem (2003) 0.80
Combination of soluble coxsackievirus-adenovirus receptor and anti-coxsackievirus siRNAs exerts synergistic antiviral activity against coxsackievirus B3. Antiviral Res (2009) 0.80
2D-PAGE as an effective method of RNA degradome analysis. Mol Biol Rep (2011) 0.80
Effects of kinetin riboside on proliferation and proapoptotic activities in human normal and cancer cell lines. J Cell Biochem (2011) 0.80
The genetic code--40 years on. Acta Biochim Pol (2007) 0.80
Crystallization and X-ray diffraction analysis of an 'all-locked' nucleic acid duplex derived from a tRNA(Ser) microhelix. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.80
Comparative crystallization and preliminary X-ray diffraction studies of locked nucleic acid and RNA stems of a tenascin C-binding aptamer. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.80
Lead toxicity through the leadzyme. Mutat Res (2004) 0.79
Crystallization and preliminary X-ray diffraction analysis of an Escherichia coli tRNA(Gly) acceptor-stem microhelix. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.79
Effect of desiccation on the dynamics of genome-wide DNA methylation in orthodox seeds of Acer platanoides L. Plant Physiol Biochem (2014) 0.79
Comprehensive insight into human aminoacyl-tRNA synthetases as autoantigens in idiopathic inflammatory myopathies. Crit Rev Immunol (2007) 0.79
eHiTS-to-VMD interface application. The search for tyrosine-tRNA ligase inhibitors. J Chem Inf Model (2007) 0.79
Human tRNA(Gly) acceptor-stem microhelix: crystallization and preliminary X-ray diffraction analysis at 1.2 A resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.78
Crystallization and preliminary X-ray diffraction data of an LNA 7-mer duplex derived from a ricin aptamer. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.78
Locked nucleic acid aptamers. Methods Mol Biol (2009) 0.78
Strand-specific silencing of a picornavirus by RNA interference: evidence for the superiority of plus-strand specific siRNAs. Antiviral Res (2006) 0.78
Charging of tRNA with non-natural amino acids at high pressure. FEBS J (2006) 0.78
Nucleic acid-based technologies in therapy of malignant gliomas. Curr Pharm Biotechnol (2011) 0.78
RNA aptamers directed against release factor 1 from Thermus thermophilus. FEBS Lett (2002) 0.78
Isoenergetic microarray mapping reveals differences in structure between tRNAiMet and tRNAmMet from Lupinus luteus. Nucleic Acids Symp Ser (Oxf) (2008) 0.78
[Effect of cigarette smoking on blood lead levels in pregnant women]. Med Wieku Rozwoj (2013) 0.78
Native transfer RNA catalyzes Diels-Alder reaction. Biochem Biophys Res Commun (2002) 0.77
Cocrystallizing natural RNA with its unnatural mirror image: biochemical and preliminary X-ray diffraction analysis of a 5S rRNA A-helix racemate. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.77
Hydrostatic and osmotic pressure study of the RNA hydration. Mol Biol Rep (2012) 0.77
"Action-at-a distance" of a new DNA oxidative damage product 6-furfuryl-adenine (kinetin) on template properties of modified DNA. Biochim Biophys Acta (2003) 0.77
Pushing the detection limits: the evanescent field in surface plasmon resonance and analyte-induced folding observation of long human telomeric repeats. Biosens Bioelectron (2011) 0.77
5S rRNA is a leadzyme. A molecular basis for lead toxicity. J Biochem (2003) 0.77
A critical role of water in the specific cleavage of the anticodon loop of some eukaryotic methionine initiator tRNAs. Mol Biol Rep (2003) 0.76
A new and efficient method for inhibition of RNA viruses by DNA interference. FEBS J (2009) 0.76
New cytosine derivatives as inhibitors of DNA methylation. Eur J Med Chem (2012) 0.76
[The influence of lead on concentration of the pregnancy-associated plasma protein A (PAPP-A) in pregnant women smoking tobacco--preliminary study]. Przegl Lek (2008) 0.76
The Seryl-tRNA synthetase/tRNASer acceptor stem interface is mediated via a specific network of water molecules. Biochem Biophys Res Commun (2011) 0.75
X-ray diffraction analysis of a human tRNA(Gly) acceptor-stem microhelix isoacceptor at 1.18 A resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.75
Binding of the plant hormone kinetin in the active site of Mistletoe Lectin I from Viscum album. Biochim Biophys Acta (2011) 0.75