Published in Genome Biol on January 01, 2007
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A microRNA component of the p53 tumour suppressor network. Nature (2007) 19.25
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Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes Dev (2008) 4.24
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Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell (2013) 3.81
Deregulation of scribble promotes mammary tumorigenesis and reveals a role for cell polarity in carcinoma. Cell (2008) 3.43
Updates to the RMAP short-read mapping software. Bioinformatics (2009) 3.18
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Novel Foxo1-dependent transcriptional programs control T(reg) cell function. Nature (2012) 2.77
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An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. Nucleic Acids Res (2009) 2.69
A complete sequence of the T. tengcongensis genome. Genome Res (2002) 2.60
Functional identification of tumor-suppressor genes through an in vivo RNA interference screen in a mouse lymphoma model. Cancer Cell (2009) 2.54
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Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Res (2003) 2.50
Targeted investigation of the Neandertal genome by array-based sequence capture. Science (2010) 2.49
DNA motifs in human and mouse proximal promoters predict tissue-specific expression. Proc Natl Acad Sci U S A (2006) 2.38
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Cell-type-based analysis of microRNA profiles in the mouse brain. Neuron (2012) 1.85
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Mining ChIP-chip data for transcription factor and cofactor binding sites. Bioinformatics (2005) 1.81
Adaptively inferring human transcriptional subnetworks. Mol Syst Biol (2006) 1.81
Determination of enriched histone modifications in non-genic portions of the human genome. BMC Genomics (2009) 1.80
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Interferon regulatory factors are transcriptional regulators of adipogenesis. Cell Metab (2008) 1.55
Neural potential of a stem cell population in the hair follicle. Cell Cycle (2007) 1.53
Conservation of small RNA pathways in platypus. Genome Res (2008) 1.51
Hsa-miR-1246, hsa-miR-320a and hsa-miR-196b-5p inhibitors can reduce the cytotoxicity of Ebola virus glycoprotein in vitro. Sci China Life Sci (2014) 1.51
RNA landscape of evolution for optimal exon and intron discrimination. Proc Natl Acad Sci U S A (2008) 1.45
Development of the human cancer microRNA network. Silence (2010) 1.43
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SpliceTrap: a method to quantify alternative splicing under single cellular conditions. Bioinformatics (2011) 1.42
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Statistical significance of cis-regulatory modules. BMC Bioinformatics (2007) 1.41
Tissue-specific regulatory elements in mammalian promoters. Mol Syst Biol (2007) 1.41
Functional genomics as applied to mapping transcription regulatory networks. Curr Opin Microbiol (2002) 1.39
Profiling alternatively spliced mRNA isoforms for prostate cancer classification. BMC Bioinformatics (2006) 1.39
Predicting methylation status of CpG islands in the human brain. Bioinformatics (2006) 1.38
Regulation of the PDK4 isozyme by the Rb-E2F1 complex. J Biol Chem (2008) 1.38
Genome-wide prediction and analysis of function-specific transcription factor binding sites. In Silico Biol (2004) 1.35
Computing exact P-values for DNA motifs. Bioinformatics (2007) 1.33
Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development. Genomics (2008) 1.31
H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence. Proc Natl Acad Sci U S A (2012) 1.28
Identification of tumor suppressors and oncogenes from genomic and epigenetic features in ovarian cancer. PLoS One (2011) 1.25
The transcription factor Foxo1 controls central-memory CD8+ T cell responses to infection. Immunity (2013) 1.23
A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome. Nucleic Acids Res (2006) 1.21
A component of the mir-17-92 polycistronic oncomir promotes oncogene-dependent apoptosis. Elife (2013) 1.20
CD36-dependent regulation of muscle FoxO1 and PDK4 in the PPAR delta/beta-mediated adaptation to metabolic stress. J Biol Chem (2008) 1.16
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DNA methylation data analysis and its application to cancer research. Epigenomics (2013) 1.14
Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development. PLoS Genet (2011) 1.14
Scanning the human genome at kilobase resolution. Genome Res (2008) 1.13
Dual-specificity splice sites function alternatively as 5' and 3' splice sites. Proc Natl Acad Sci U S A (2007) 1.10
Complete genome analysis of three Acinetobacter baumannii clinical isolates in China for insight into the diversification of drug resistance elements. PLoS One (2013) 1.10
Identification of synaptic targets of Drosophila pumilio. PLoS Comput Biol (2008) 1.10
ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor. Nucleic Acids Res (2011) 1.09
Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes. BMC Bioinformatics (2011) 1.04
A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data. Am J Hum Genet (2006) 1.04
Long non-coding RNAs and complex human diseases. Int J Mol Sci (2013) 1.03
Computational comparison of two mouse draft genomes and the human golden path. Genome Biol (2002) 1.01