Published in Yeast on March 01, 2009
Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: implications for proteasome structure and assembly. Mol Cell (2010) 2.35
Recruitment of the ESCRT machinery to a putative seven-transmembrane-domain receptor is mediated by an arrestin-related protein. Mol Cell Biol (2009) 1.37
Internal amino acids promote Gap1 permease ubiquitylation via TORC1/Npr1/14-3-3-dependent control of the Bul arrestin-like adaptors. Mol Cell Biol (2012) 1.32
Exploring the topology of the Gid complex, the E3 ubiquitin ligase involved in catabolite-induced degradation of gluconeogenic enzymes. J Biol Chem (2012) 0.99
Cassette series designed for live-cell imaging of proteins and high-resolution techniques in yeast. Yeast (2012) 0.95
Diacylglycerol acyl transferase 1 overexpression detoxifies cardiac lipids in PPARγ transgenic mice. J Lipid Res (2012) 0.91
Loss of the SUMO protease Ulp2 triggers a specific multichromosome aneuploidy. Genes Dev (2016) 0.91
Rtt107 is required for recruitment of the SMC5/6 complex to DNA double strand breaks. J Biol Chem (2011) 0.91
New vectors for epitope tagging and gene disruption in Schizosaccharomyces pombe. Biotechniques (2013) 0.87
Desumoylation of the endoplasmic reticulum membrane VAP family protein Scs2 by Ulp1 and SUMO regulation of the inositol synthesis pathway. Mol Cell Biol (2011) 0.85
Key functional regions in the histone variant H2A.Z C-terminal docking domain. Mol Cell Biol (2011) 0.82
Analysis of ER resident proteins in Saccharomyces cerevisiae: implementation of H/KDEL retrieval sequences. Traffic (2013) 0.81
Structures and Functions of the Multiple KOW Domains of Transcription Elongation Factor Spt5. Mol Cell Biol (2015) 0.81
The C terminus of the histone chaperone Asf1 cross-links to histone H3 in yeast and promotes interaction with histones H3 and H4. Mol Cell Biol (2012) 0.80
cis- and trans-acting localization determinants of pH response regulator Rim13 in Saccharomyces cerevisiae. Eukaryot Cell (2012) 0.79
Analysis of Polygenic Mutants Suggests a Role for Mediator in Regulating Transcriptional Activation Distance in Saccharomyces cerevisiae. Genetics (2015) 0.78
Functional Equivalence of an Evolutionarily Conserved RNA Binding Module. J Biol Chem (2015) 0.78
Chromatin immunoprecipitation to detect DNA replication and repair factors. Methods Mol Biol (2015) 0.76
Cbr1 is a Dph3 reductase required for the tRNA wobble uridine modification. Nat Chem Biol (2016) 0.75
Amino acid metabolites that regulate G protein signaling during osmotic stress. PLoS Genet (2017) 0.75
G196 epitope tag system: a novel monoclonal antibody, G196, recognizes the small, soluble peptide DLVPR with high affinity. Sci Rep (2017) 0.75
Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing. Proc Natl Acad Sci U S A (2016) 0.75
CRISPR-UnLOCK: Multipurpose Cas9-Based Strategies for Conversion of Yeast Libraries and Strains. Front Microbiol (2017) 0.75
The Yeast Heterochromatin Protein Sir3 Experienced Functional Changes in the AAA+ Domain After Gene Duplication and Subfunctionalization. Genetics (2017) 0.75
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics (1989) 105.30
A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucleic Acids Res (1993) 21.52
Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast (1998) 18.47
Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast. Methods Enzymol (1991) 16.88
Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast (1999) 14.19
Getting started with yeast. Methods Enzymol (2002) 6.60
Heterologous HIS3 marker and GFP reporter modules for PCR-targeting in Saccharomyces cerevisiae. Yeast (1997) 5.61
Rapid and reliable protein extraction from yeast. Yeast (2000) 5.48
Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae. Yeast (1995) 5.22
Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes. Mol Biol Cell (2000) 5.19
Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry. Mol Cell (2007) 4.54
Making the most of affinity tags. Trends Biotechnol (2005) 2.48
A multimeric assembly factor controls the formation of alternative 20S proteasomes. Nat Struct Mol Biol (2008) 2.20
Proteasome-associated proteins: regulation of a proteolytic machine. Biol Chem (2005) 2.01
Bimolecular fluorescence complementation analysis system for in vivo detection of protein-protein interaction in Saccharomyces cerevisiae. Yeast (2007) 1.67
Short tetracysteine tags to beta-tubulin demonstrate the significance of small labels for live cell imaging. Mol Biol Cell (2004) 1.31
HB tag modules for PCR-based gene tagging and tandem affinity purification in Saccharomyces cerevisiae. Yeast (2006) 1.23
PCR-based engineering of yeast genome. Methods Enzymol (2002) 1.20
A flexible protein linker improves the function of epitope-tagged proteins in Saccharomyces cerevisiae. Yeast (2007) 1.12
A vector system for efficient and economical switching of C-terminal epitope tags in Saccharomyces cerevisiae. Yeast (2008) 1.03
Epitope tagging. Biotechniques (2008) 1.03
Assaying degradation and deubiquitination of a ubiquitinated substrate by purified 26S proteasomes. Methods Enzymol (2005) 0.99
Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast. Yeast (2008) 0.96
Repair of damaged and mismatched DNA by the XPC homologues Rhp41 and Rhp42 of fission yeast. Genetics (2003) 0.92
Modification of proteins by ubiquitin and ubiquitin-like proteins. Annu Rev Cell Dev Biol (2006) 10.74
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell (2009) 6.16
Mechanism and function of deubiquitinating enzymes. Biochim Biophys Acta (2004) 4.54
Diversity of degradation signals in the ubiquitin-proteasome system. Nat Rev Mol Cell Biol (2008) 4.42
Defining the SUMO-modified proteome by multiple approaches in Saccharomyces cerevisiae. J Biol Chem (2004) 3.53
A superfamily of protein tags: ubiquitin, SUMO and related modifiers. Trends Biochem Sci (2003) 3.19
Membrane and soluble substrates of the Doa10 ubiquitin ligase are degraded by distinct pathways. EMBO J (2006) 2.58
Function and regulation of SUMO proteases. Nat Rev Mol Cell Biol (2012) 2.55
Distinct machinery is required in Saccharomyces cerevisiae for the endoplasmic reticulum-associated degradation of a multispanning membrane protein and a soluble luminal protein. J Biol Chem (2004) 2.41
Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: implications for proteasome structure and assembly. Mol Cell (2010) 2.35
Autoregulation of an E2 enzyme by ubiquitin-chain assembly on its catalytic residue. Nat Cell Biol (2007) 2.32
A multimeric assembly factor controls the formation of alternative 20S proteasomes. Nat Struct Mol Biol (2008) 2.20
The yeast Hex3.Slx8 heterodimer is a ubiquitin ligase stimulated by substrate sumoylation. J Biol Chem (2007) 2.14
Molecular architecture and assembly of the eukaryotic proteasome. Annu Rev Biochem (2013) 2.04
The Ulp1 SUMO isopeptidase: distinct domains required for viability, nuclear envelope localization, and substrate specificity. J Cell Biol (2003) 1.97
Multiple assembly chaperones govern biogenesis of the proteasome regulatory particle base. Cell (2009) 1.85
Spatially regulated ubiquitin ligation by an ER/nuclear membrane ligase. Nature (2006) 1.78
Ubiquitin-dependent degradation of the yeast Mat(alpha)2 repressor enables a switch in developmental state. Genes Dev (2003) 1.76
Membrane topology of the yeast endoplasmic reticulum-localized ubiquitin ligase Doa10 and comparison with its human ortholog TEB4 (MARCH-VI). J Biol Chem (2005) 1.68
Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing. Proc Natl Acad Sci U S A (2005) 1.55
beta-Subunit appendages promote 20S proteasome assembly by overcoming an Ump1-dependent checkpoint. EMBO J (2007) 1.52
Sem1, the yeast ortholog of a human BRCA2-binding protein, is a component of the proteasome regulatory particle that enhances proteasome stability. J Cell Sci (2004) 1.42
An amphipathic helix targets serum and glucocorticoid-induced kinase 1 to the endoplasmic reticulum-associated ubiquitin-conjugation machinery. Proc Natl Acad Sci U S A (2006) 1.35
Plasticity in eucaryotic 20S proteasome ring assembly revealed by a subunit deletion in yeast. EMBO J (2004) 1.34
A nuclear envelope protein linking nuclear pore basket assembly, SUMO protease regulation, and mRNA surveillance. J Cell Biol (2007) 1.29
SUMO-independent in vivo activity of a SUMO-targeted ubiquitin ligase toward a short-lived transcription factor. Genes Dev (2010) 1.28
Some assembly required: dedicated chaperones in eukaryotic proteasome biogenesis. Biol Chem (2008) 1.16
The Ulp2 SUMO protease is required for cell division following termination of the DNA damage checkpoint. Mol Cell Biol (2007) 1.13
A tetrahedral transition state at the active sites of the 20S proteasome is coupled to opening of the alpha-ring channel. Structure (2009) 1.11
Degradation of the bile salt export pump at endoplasmic reticulum in progressive familial intrahepatic cholestasis type II. Hepatology (2008) 1.07
A conserved 20S proteasome assembly factor requires a C-terminal HbYX motif for proteasomal precursor binding. Nat Struct Mol Biol (2011) 1.05
A conserved late endosome-targeting signal required for Doa4 deubiquitylating enzyme function. J Cell Biol (2006) 1.04
Aberrant substrate engagement of the ER translocon triggers degradation by the Hrd1 ubiquitin ligase. J Cell Biol (2012) 1.03
Order of the proteasomal ATPases and eukaryotic proteasome assembly. Cell Biochem Biophys (2011) 1.03
An unusual transmembrane helix in the endoplasmic reticulum ubiquitin ligase Doa10 modulates degradation of its cognate E2 enzyme. J Biol Chem (2011) 1.02
Incorporation of the Rpn12 subunit couples completion of proteasome regulatory particle lid assembly to lid-base joining. Mol Cell (2011) 0.98
The SUMO-targeted ubiquitin ligase subunit Slx5 resides in nuclear foci and at sites of DNA breaks. Cell Cycle (2009) 0.97
Essential role of nuclear localization for yeast Ulp2 SUMO protease function. Mol Biol Cell (2009) 0.95
Ubiquitin-dependent protein degradation at the yeast endoplasmic reticulum and nuclear envelope. Crit Rev Biochem Mol Biol (2014) 0.92
Ubiquitin signalling: what's in a chain? Nat Cell Biol (2004) 0.92
Designed proteins to modulate cellular networks. ACS Chem Biol (2010) 0.89
The short-lived Matalpha2 transcriptional repressor is protected from degradation in vivo by interactions with its corepressors Tup1 and Ssn6. Mol Cell Biol (2006) 0.89
Assembly of the 20S proteasome. Biochim Biophys Acta (2013) 0.88
Redundancy and variation in the ubiquitin-mediated proteolytic targeting of a transcription factor. Cell Cycle (2010) 0.88
Analysis of protein ubiquitination. Curr Protoc Protein Sci (2011) 0.88
N-terminal acetylation of the yeast Derlin Der1 is essential for Hrd1 ubiquitin-ligase activity toward luminal ER substrates. Mol Biol Cell (2013) 0.88
Introduction to intracellular protein degradation. Chem Rev (2009) 0.87
A conserved protein with AN1 zinc finger and ubiquitin-like domains modulates Cdc48 (p97) function in the ubiquitin-proteasome pathway. J Biol Chem (2013) 0.86
Desumoylation of the endoplasmic reticulum membrane VAP family protein Scs2 by Ulp1 and SUMO regulation of the inositol synthesis pathway. Mol Cell Biol (2011) 0.85
Ulp2 and the DNA damage response: desumoylation enables safe passage through mitosis. Cell Cycle (2007) 0.83
Analysis of protein ubiquitination. Curr Protoc Protein Sci (2002) 0.82
Assaying protein ubiquitination in Saccharomyces cerevisiae. Methods Enzymol (2002) 0.82
Identification of SUMO-interacting proteins by yeast two-hybrid analysis. Methods Mol Biol (2009) 0.82
A WLM protein with SUMO-directed protease activity. Mol Cell Biol (2010) 0.79
Preparation and characterization of yeast and human desumoylating enzymes. Methods Enzymol (2005) 0.78
NF-kappaB signaling: flipping the switch with polyubiquitin chains. Curr Biol (2004) 0.78
Ubiquitin-dependent control of development in Saccharomyces cerevisiae. Curr Opin Microbiol (2004) 0.77
Split-Doa10: a naturally split polytopic eukaryotic membrane protein generated by fission of a nuclear gene. PLoS One (2012) 0.76
A new class of SUMO proteases. EMBO Rep (2012) 0.76
Varshavsky's contributions. Science (2004) 0.75