Published in EMBO J on March 12, 2009
AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia. Mol Cell (2010) 4.99
Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature (2009) 4.31
The Paf1 complex: platform or player in RNA polymerase II transcription? Biochim Biophys Acta (2010) 2.03
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Chromatin landscape dictates HSF binding to target DNA elements. PLoS Genet (2010) 1.82
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Chromatin and transcription in yeast. Genetics (2012) 1.61
Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells. Mol Cell (2010) 1.50
Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription. EMBO J (2011) 1.44
Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications. Genome Res (2014) 1.32
Drosophila histone locus bodies form by hierarchical recruitment of components. J Cell Biol (2011) 1.25
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Stringent analysis of gene function and protein-protein interactions using fluorescently tagged genes. Genetics (2011) 1.11
Stress-induced PARP activation mediates recruitment of Drosophila Mi-2 to promote heat shock gene expression. PLoS Genet (2011) 1.05
Long- and short-range transcriptional repressors induce distinct chromatin states on repressed genes. Curr Biol (2011) 1.04
Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Mol Cell Biol (2010) 1.02
A tandem SH2 domain in transcription elongation factor Spt6 binds the phosphorylated RNA polymerase II C-terminal repeat domain (CTD). J Biol Chem (2010) 1.00
SAGA function in tissue-specific gene expression. Trends Cell Biol (2011) 1.00
Differentiation driven changes in the dynamic organization of Basal transcription initiation. PLoS Biol (2009) 0.99
Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast. Mol Cell Biol (2013) 0.98
The histone chaperone Spt6 coordinates histone H3K27 demethylation and myogenesis. EMBO J (2013) 0.97
Histone variant H2A.Z and RNA polymerase II transcription elongation. Mol Cell Biol (2011) 0.97
Noncanonical tandem SH2 enables interaction of elongation factor Spt6 with RNA polymerase II. J Biol Chem (2010) 0.96
Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis. Nucleic Acids Res (2010) 0.96
Lysine acetyltransferase GCN5b interacts with AP2 factors and is required for Toxoplasma gondii proliferation. PLoS Pathog (2014) 0.96
Leo1 subunit of the yeast paf1 complex binds RNA and contributes to complex recruitment. J Biol Chem (2010) 0.94
Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe. Mol Cell Biol (2011) 0.93
Evolution of SH2 domains and phosphotyrosine signalling networks. Philos Trans R Soc Lond B Biol Sci (2012) 0.93
The structure of an Iws1/Spt6 complex reveals an interaction domain conserved in TFIIS, Elongin A and Med26. EMBO J (2010) 0.92
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Transient estrogen receptor binding and p300 redistribution support a squelching mechanism for estradiol-repressed genes. Mol Endocrinol (2014) 0.92
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Solution structure of tandem SH2 domains from Spt6 protein and their binding to the phosphorylated RNA polymerase II C-terminal domain. J Biol Chem (2011) 0.88
A feed forward circuit comprising Spt6, Ctk1 and PAF regulates Pol II CTD phosphorylation and transcription elongation. Nucleic Acids Res (2013) 0.85
Gene promoters dictate histone occupancy within genes. EMBO J (2013) 0.83
Spt6 levels are modulated by PAAF1 and proteasome to regulate the HIV-1 LTR. Retrovirology (2012) 0.83
Fcp1 dephosphorylation of the RNA polymerase II C-terminal domain is required for efficient transcription of heat shock genes. Mol Cell Biol (2012) 0.83
Mutations in the transcription elongation factor SPT5 disrupt a reporter for dosage compensation in Drosophila. PLoS Genet (2012) 0.82
The transcript elongation factor SPT4/SPT5 is involved in auxin-related gene expression in Arabidopsis. Nucleic Acids Res (2014) 0.82
Myosin VI regulates gene pairing and transcriptional pause release in T cells. Proc Natl Acad Sci U S A (2015) 0.82
The transcription factor Spn1 regulates gene expression via a highly conserved novel structural motif. J Mol Biol (2010) 0.81
Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation. Genes Dev (2016) 0.80
Histone deacetylases and phosphorylated polymerase II C-terminal domain recruit Spt6 for cotranscriptional histone reassembly. Mol Cell Biol (2014) 0.79
SETD2: an epigenetic modifier with tumor suppressor functionality. Oncotarget (2016) 0.78
The Transition of Poised RNA Polymerase II to an Actively Elongating State Is a "Complex" Affair. Genet Res Int (2011) 0.78
Crystallization and preliminary crystallographic analysis of eukaryotic transcription and mRNA export factor Iws1 from Encephalitozoon cuniculi. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.77
The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways. PLoS Pathog (2015) 0.77
Genome-wide errant targeting by Hairy. Elife (2015) 0.76
Spt6: two fundamentally distinct functions in the regulation of histone modification. Epigenetics (2013) 0.76
Chaperoning RNA Polymerase II through repressive chromatin. EMBO J (2013) 0.76
The Abundant Histone Chaperones Spt6 and FACT Collaborate to Assemble, Inspect, and Maintain Chromatin Structure in Saccharomyces cerevisiae. Genetics (2015) 0.75
RNAi screen in Drosophila larvae identifies histone deacetylase 3 as a positive regulator of the hsp70 heat shock gene expression during heat shock. Biochim Biophys Acta (2014) 0.75
Spt6 Is Essential for rRNA Synthesis by RNA Polymerase I. Mol Cell Biol (2015) 0.75
CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem (2016) 0.75
Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved? Biochim Biophys Acta (2016) 0.75
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A chromatin landmark and transcription initiation at most promoters in human cells. Cell (2007) 23.41
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RNA polymerase is poised for activation across the genome. Nat Genet (2007) 9.57
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DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev (1998) 6.96
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RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. Mol Cell Biol (1986) 4.40
P-TEFb kinase recruitment and function at heat shock loci. Genes Dev (2000) 4.07
Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo. Mol Cell (2005) 4.00
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Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock. Mol Cell Biol (2003) 3.65
Transitions in RNA polymerase II elongation complexes at the 3' ends of genes. EMBO J (2004) 3.50
Coordination of transcription, RNA processing, and surveillance by P-TEFb kinase on heat shock genes. Mol Cell (2004) 3.26
Evidence that Spt6p controls chromatin structure by a direct interaction with histones. Science (1996) 3.23
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science (2003) 3.22
Nucleosome displacement in transcription. Genes Dev (2006) 3.16
The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo. Mol Cell Biol (2003) 3.03
Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Mol Cell (2006) 2.98
Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster. Genes Dev (2000) 2.78
Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins. Mol Cell Biol (2003) 2.77
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila. Nature (2002) 2.77
Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. Mol Cell (2006) 2.71
Early events in the stimulation of mammary tumor virus RNA synthesis by glucocorticoids. Novel assays of transcription rates. J Biol Chem (1984) 2.68
Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS. Mol Cell (2005) 2.68
Rapid changes in Drosophila transcription after an instantaneous heat shock. Mol Cell Biol (1993) 2.57
Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates. J Biol Chem (1992) 2.53
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The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export. Genes Dev (2007) 2.36
The Paf1 complex has functions independent of actively transcribing RNA polymerase II. Mol Cell (2004) 2.31
Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila. EMBO J (2007) 2.19
Drosophila Paf1 modulates chromatin structure at actively transcribed genes. Mol Cell Biol (2006) 2.16
Spatial and temporal patterns of E74 transcription during Drosophila development. Cell (1990) 2.11
Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density. Mol Cell Biol (2005) 1.89
Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. Mol Cell (2007) 1.87
Mapping and identification of essential gene functions on the X chromosome of Drosophila. EMBO Rep (2001) 1.83
Spt5 cooperates with human immunodeficiency virus type 1 Tat by preventing premature RNA release at terminator sequences. Mol Cell Biol (2002) 1.82
Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36. Mol Cell Biol (2008) 1.82
P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo. Mol Cell Biol (2007) 1.81
Imaging Drosophila gene activation and polymerase pausing in vivo. Nature (2007) 1.75
The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo. Mol Cell Biol (2007) 1.72
Pcf11 is a termination factor in Drosophila that dismantles the elongation complex by bridging the CTD of RNA polymerase II to the nascent transcript. Mol Cell (2006) 1.61
Molecular evidence indicating that the yeast PAF complex is required for transcription elongation. EMBO Rep (2004) 1.58
Interaction between transcription elongation factors and mRNA 3'-end formation at the Saccharomyces cerevisiae GAL10-GAL7 locus. J Biol Chem (2004) 1.53
Molecular evidence for a positive role of Spt4 in transcription elongation. EMBO J (2003) 1.48
Functional interaction between pleiotropic transactivator pUL69 of human cytomegalovirus and the human homolog of yeast chromatin regulatory protein SPT6. J Virol (2000) 1.41
Drosophila ELL is associated with actively elongating RNA polymerase II on transcriptionally active sites in vivo. EMBO J (2001) 1.39
Human Spt6 stimulates transcription elongation by RNA polymerase II in vitro. Mol Cell Biol (2004) 1.38
Heat shock and developmental regulation of the Drosophila melanogaster hsp83 gene. Mol Cell Biol (1989) 1.35
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In vivo evidence that defects in the transcriptional elongation factors RPB2, TFIIS, and SPT5 enhance upstream poly(A) site utilization. Mol Cell Biol (2003) 1.12
In vivo requirement of the RNA polymerase II elongation factor elongin A for proper gene expression and development. Mol Cell Biol (2004) 1.01
Precise nanometer localization analysis for individual fluorescent probes. Biophys J (2002) 22.24
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science (2008) 16.48
Nonlinear magic: multiphoton microscopy in the biosciences. Nat Biotechnol (2003) 13.29
Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk. Nature (2011) 13.25
RNA polymerase is poised for activation across the genome. Nat Genet (2007) 9.57
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet (2007) 9.56
Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation. Proc Natl Acad Sci U S A (2003) 8.92
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Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension. Nature (2003) 7.90
Water-soluble quantum dots for multiphoton fluorescence imaging in vivo. Science (2003) 6.92
Neural activity triggers neuronal oxidative metabolism followed by astrocytic glycolysis. Science (2004) 5.74
PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. Mol Cell (2002) 5.59
Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science (2008) 5.48
Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell (2008) 4.81
Interpreting second-harmonic generation images of collagen I fibrils. Biophys J (2004) 4.74
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell (2011) 4.42
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat Rev Genet (2012) 4.37
Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature (2009) 4.31
Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell (2010) 4.28
NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell (2004) 4.21
Biological and chemical applications of fluorescence correlation spectroscopy: a review. Biochemistry (2002) 4.13
Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science (2009) 4.13
Two-photon fluorescence spectroscopy and microscopy of NAD(P)H and flavoprotein. Biophys J (2002) 4.10
Large-scale fluid/fluid phase separation of proteins and lipids in giant plasma membrane vesicles. Proc Natl Acad Sci U S A (2007) 4.09
NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly. Genes Dev (2008) 3.69
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In vivo multiphoton microscopy of deep brain tissue. J Neurophysiol (2003) 3.63
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev (2011) 3.55
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc Natl Acad Sci U S A (2002) 3.52
Coordination of transcription, RNA processing, and surveillance by P-TEFb kinase on heat shock genes. Mol Cell (2004) 3.26
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science (2003) 3.22
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Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation. Biochim Biophys Acta (2010) 2.86
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Inhibition of TGF-β signaling in mesenchymal stem cells of subchondral bone attenuates osteoarthritis. Nat Med (2013) 2.74
High-resolution dynamic mapping of histone-DNA interactions in a nucleosome. Nat Struct Mol Biol (2009) 2.74
Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS. Mol Cell (2005) 2.68
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Science (2013) 2.66
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Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science (2013) 2.51
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X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature (2011) 2.44
Visualization of retrovirus budding with correlated light and electron microscopy. Proc Natl Acad Sci U S A (2005) 2.41
Conformational dependence of intracellular NADH on metabolic state revealed by associated fluorescence anisotropy. J Biol Chem (2005) 2.32
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Drosophila Paf1 modulates chromatin structure at actively transcribed genes. Mol Cell Biol (2006) 2.16
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Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes. J Mol Biol (2004) 1.87
DNA fragment sizing by single molecule detection in submicrometer-sized closed fluidic channels. Anal Chem (2002) 1.84
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The Drosophila BRM complex facilitates global transcription by RNA polymerase II. EMBO J (2002) 1.78
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Compact and flexible raster scanning multiphoton endoscope capable of imaging unstained tissue. Proc Natl Acad Sci U S A (2011) 1.74
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Multiphoton microscopy guides neurotrophin modification with poly(ethylene glycol) to enhance interstitial diffusion. Nat Mater (2004) 1.59
Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nat Struct Mol Biol (2006) 1.58
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Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. Mol Cell (2004) 1.49
Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription. EMBO J (2011) 1.44
Assessment of the association between XRCC1 Arg399Gln polymorphism and glioma susceptibility. Tumour Biol (2013) 1.44
Achieving uniform mixing in a microfluidic device: hydrodynamic focusing prior to mixing. Anal Chem (2006) 1.44
Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription. Genes Dev (2013) 1.43
Acetylation of RNA polymerase II regulates growth-factor-induced gene transcription in mammalian cells. Mol Cell (2013) 1.40
Cdk7 is required for full activation of Drosophila heat shock genes and RNA polymerase II phosphorylation in vivo. Mol Cell Biol (2003) 1.39
Rapid activity-induced transcription of Arc and other IEGs relies on poised RNA polymerase II. Nat Neurosci (2011) 1.39
GUV preparation and imaging: minimizing artifacts. Biochim Biophys Acta (2010) 1.39
Genome-wide control of RNA polymerase II activity by cohesin. PLoS Genet (2013) 1.38
Activator-induced spread of poly(ADP-ribose) polymerase promotes nucleosome loss at Hsp70. Mol Cell (2011) 1.37
Identification of a helical intermediate in trifluoroethanol-induced alpha-synuclein aggregation. Proc Natl Acad Sci U S A (2010) 1.37