Published in EMBO J on June 21, 2011
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UpSET recruits HDAC complexes and restricts chromatin accessibility and acetylation at promoter regions. Cell (2012) 0.96
The Drosophila ortholog of MLL3 and MLL4, trithorax related, functions as a negative regulator of tissue growth. Mol Cell Biol (2013) 0.96
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Trithorax maintains the functional heterogeneity of neural stem cells through the transcription factor buttonhead. Elife (2014) 0.87
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Drosophila SETs its sights on cancer: Trr/MLL3/4 COMPASS-like complexes in development and disease. Mol Cell Biol (2013) 0.87
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Disrupted intricacy of histone H3K4 methylation in neurodevelopmental disorders. Epigenomics (2015) 0.86
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Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory. Elife (2016) 0.81
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Ash2 acts as an ecdysone receptor coactivator by stabilizing the histone methyltransferase Trr. Mol Biol Cell (2012) 0.80
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Setd1a regulates progenitor B-cell-to-precursor B-cell development through histone H3 lysine 4 trimethylation and Ig heavy-chain rearrangement. FASEB J (2014) 0.78
Ash2L enables P53-dependent apoptosis by favoring stable transcription pre-initiation complex formation on its pro-apoptotic target promoters. Oncogene (2014) 0.78
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Histone H3 lysine 4 trimethylation regulates cotranscriptional H2A variant exchange by Tip60 complexes to maximize gene expression. Proc Natl Acad Sci U S A (2014) 0.76
Drosophila O-GlcNAcase Deletion Globally Perturbs Chromatin O-GlcNAcylation. J Biol Chem (2016) 0.76
On the way of revealing coactivator complexes cross-talk during transcriptional activation. Cell Biosci (2016) 0.76
Maintenance of Tissue Pluripotency by Epigenetic Factors Acting at Multiple Levels. PLoS Genet (2016) 0.76
Polycomb and trithorax opposition in development and disease. Wiley Interdiscip Rev Dev Biol (2016) 0.76
Lack of the COMPASS Component Ccl1 Reduces H3K4 Trimethylation Levels and Affects Transcription of Secondary Metabolite Genes in Two Plant-Pathogenic Fusarium Species. Front Microbiol (2017) 0.75
The Transcriptional Corepressor SIN3 Directly Regulates Genes Involved in Methionine Catabolism and Affects Histone Methylation, Linking Epigenetics and Metabolism. J Biol Chem (2016) 0.75
Epigenetic Control of Phenotypic Plasticity in the Filamentous Fungus Neurospora crassa. G3 (Bethesda) (2016) 0.75
Molecular mechanism of the priming by jasmonic acid of specific dehydration stress response genes in Arabidopsis. Epigenetics Chromatin (2016) 0.75
Correlation Between Expression of Recombinant Proteins and Abundance of H3K4Me3 on the Enhancer of Human Cytomegalovirus Major Immediate-Early Promoter. Mol Biotechnol (2017) 0.75
Histone H3 lysine 4 methyltransferase KMT2D. Gene (2017) 0.75
The SET1 Complex Selects Actively Transcribed Target Genes via Multivalent Interaction with CpG Island Chromatin. Cell Rep (2017) 0.75
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ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature (2006) 9.30
Breaking barriers to transcription elongation. Nat Rev Mol Cell Biol (2006) 8.18
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell (2007) 6.62
Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell (2005) 6.12
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CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature (2010) 4.86
Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. Genes Dev (2003) 4.73
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Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol Cell (2006) 3.87
A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3. Proc Natl Acad Sci U S A (2001) 3.87
RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell (2009) 3.82
Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock. Mol Cell Biol (2003) 3.65
Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev (2005) 3.57
Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin. Mol Cell (2003) 3.47
CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development (2009) 3.34
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II. Mol Cell Biol (2009) 3.26
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos. PLoS Biol (2009) 3.24
CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex. J Biol Chem (2005) 2.86
Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex. Nat Cell Biol (2004) 2.79
CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo. Science (2007) 2.71
Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase. J Biol Chem (2005) 2.68
Heterochromatin formation in Drosophila is initiated through active removal of H3K4 methylation by the LSD1 homolog SU(VAR)3-3. Mol Cell (2007) 2.66
Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene. Science (2001) 2.61
MLL and CREB bind cooperatively to the nuclear coactivator CREB-binding protein. Mol Cell Biol (2001) 2.58
The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth. Genes Dev (2007) 2.57
Dynamics of heat shock factor association with native gene loci in living cells. Nature (2006) 2.45
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Spt6 enhances the elongation rate of RNA polymerase II in vivo. EMBO J (2009) 1.77
Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II. PLoS Genet (2008) 1.75
Two Drosophila Ada2 homologues function in different multiprotein complexes. Mol Cell Biol (2003) 1.63
Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila. Mol Cell Biol (2006) 1.60
Methylation at lysine 4 of histone H3 in ecdysone-dependent development of Drosophila. Nature (2003) 1.57
Mixed lineage leukemia: a structure-function perspective of the MLL1 protein. FEBS J (2010) 1.28
Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1. Mol Cell Biol (2009) 1.18
Functional antagonism between histone H3K4 demethylases in vivo. Genes Dev (2011) 1.16
Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. Nucleic Acids Res (2011) 1.08
Structural characterization of Set1 RNA recognition motifs and their role in histone H3 lysine 4 methylation. J Mol Biol (2006) 1.07
A plasmid model system shows that Drosophila dosage compensation depends on the global acetylation of histone H4 at lysine 16 and is not affected by depletion of common transcription elongation chromatin marks. Mol Cell Biol (2007) 1.06
CXXC finger protein 1 restricts the Setd1A histone H3K4 methyltransferase complex to euchromatin. FEBS J (2009) 1.01
Imaging transcription dynamics at endogenous genes in living Drosophila tissues. Methods (2008) 0.99
Molecular genetic analysis of the Drosophila trithorax-related gene which encodes a novel SET domain protein. Mech Dev (1999) 0.98
Histone H2B C-terminal helix mediates trans-histone H3K4 methylation independent of H2B ubiquitination. Mol Cell Biol (2010) 0.97
Characterising the binding specificities of the subunits associated with the KMT2/Set1 histone lysine methyltransferase. J Mol Biol (2010) 0.81
Structural basis for H3K4 trimethylation by yeast Set1/COMPASS. Adv Enzyme Regul (2009) 0.79
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science (2008) 16.48
Breaking barriers to transcription elongation. Nat Rev Mol Cell Biol (2006) 8.18
PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. Mol Cell (2002) 5.59
Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science (2008) 5.48
Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell (2008) 4.81
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell (2011) 4.42
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat Rev Genet (2012) 4.37
Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature (2009) 4.31
NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell (2004) 4.21
Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock. Mol Cell Biol (2003) 3.65
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev (2011) 3.55
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc Natl Acad Sci U S A (2002) 3.52
Coordination of transcription, RNA processing, and surveillance by P-TEFb kinase on heat shock genes. Mol Cell (2004) 3.26
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science (2003) 3.22
PARP goes transcription. Cell (2003) 3.16
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila. Nature (2002) 2.77
High-resolution dynamic mapping of histone-DNA interactions in a nucleosome. Nat Struct Mol Biol (2009) 2.74
Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS. Mol Cell (2005) 2.68
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Science (2013) 2.66
Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior. Proc Natl Acad Sci U S A (2002) 2.53
CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1. Genes Dev (2010) 2.52
Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science (2013) 2.51
Divergent transcription: a new feature of active promoters. Cell Cycle (2009) 2.50
Dynamics of heat shock factor association with native gene loci in living cells. Nature (2006) 2.45
X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature (2011) 2.44
A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Mol Cell (2004) 2.27
Drosophila Paf1 modulates chromatin structure at actively transcribed genes. Mol Cell Biol (2006) 2.16
Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells. Mol Cell (2013) 2.13
The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes. J Biol Chem (2005) 1.93
Control of transcriptional elongation. Annu Rev Genet (2013) 1.92
Defining the status of RNA polymerase at promoters. Cell Rep (2012) 1.91
Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. Mol Cell (2007) 1.87
Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes. J Mol Biol (2004) 1.87
Chromatin landscape dictates HSF binding to target DNA elements. PLoS Genet (2010) 1.82
In and out: histone variant exchange in chromatin. Trends Biochem Sci (2005) 1.81
P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo. Mol Cell Biol (2007) 1.81
The Drosophila BRM complex facilitates global transcription by RNA polymerase II. EMBO J (2002) 1.78
Spt6 enhances the elongation rate of RNA polymerase II in vivo. EMBO J (2009) 1.77
Tracking rates of transcription and splicing in vivo. Nat Struct Mol Biol (2009) 1.73
Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila. Mol Cell Biol (2006) 1.60
Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nat Struct Mol Biol (2006) 1.58
Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. Elife (2013) 1.51
Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells. Mol Cell (2010) 1.50
Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. Mol Cell (2004) 1.49
Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription. Genes Dev (2013) 1.43
Regulation of transcription through acetylation of H3K122 on the lateral surface of the histone octamer. Cell (2013) 1.40
Cdk7 is required for full activation of Drosophila heat shock genes and RNA polymerase II phosphorylation in vivo. Mol Cell Biol (2003) 1.39
Genome-wide control of RNA polymerase II activity by cohesin. PLoS Genet (2013) 1.38
Activator-induced spread of poly(ADP-ribose) polymerase promotes nucleosome loss at Hsp70. Mol Cell (2011) 1.37
Peptidylarginine deiminase 2-catalyzed histone H3 arginine 26 citrullination facilitates estrogen receptor α target gene activation. Proc Natl Acad Sci U S A (2012) 1.35
Overcoming the nucleosome barrier during transcript elongation. Trends Genet (2012) 1.19
Specific SR protein-dependent splicing substrates identified through genomic SELEX. Nucleic Acids Res (2003) 1.18
Transcription through chromatin: understanding a complex FACT. Biochim Biophys Acta (2004) 1.15
Yng1p modulates the activity of Sas3p as a component of the yeast NuA3 Hhistone acetyltransferase complex. Mol Cell Biol (2002) 1.15
Minichromosome maintenance helicase paralog MCM9 is dispensible for DNA replication but functions in germ-line stem cells and tumor suppression. Proc Natl Acad Sci U S A (2011) 1.12
RNA aptamers directed to discrete functional sites on a single protein structural domain. Proc Natl Acad Sci U S A (2007) 1.10
Interactions between subunits of Drosophila Mediator and activator proteins. Trends Biochem Sci (2005) 1.10
Accurate prediction of inducible transcription factor binding intensities in vivo. PLoS Genet (2012) 1.10
An RNA aptamer that interferes with the DNA binding of the HSF transcription activator. Nucleic Acids Res (2006) 1.10
Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes. Proc Natl Acad Sci U S A (2004) 1.09
Mechanisms by which transcription factors gain access to target sequence elements in chromatin. Curr Opin Genet Dev (2012) 1.09
Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome. Proc Natl Acad Sci U S A (2009) 1.04
The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo. Mol Cell (2011) 1.02
The use of spinal manipulative therapy for pediatric health conditions: a systematic review of the literature. J Can Chiropr Assoc (2012) 0.99
Indirect immunofluorescent labeling of Drosophila polytene chromosomes: visualizing protein interactions with chromatin in vivo. Methods Enzymol (2004) 0.99
Imaging transcription dynamics at endogenous genes in living Drosophila tissues. Methods (2008) 0.99
Selection and elution of aptamers using nanoporous sol-gel arrays with integrated microheaters. Lab Chip (2009) 0.97
The two rotor components of yeast mitochondrial ATP synthase are mechanically coupled by subunit delta. Proc Natl Acad Sci U S A (2003) 0.96
Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation. Genes Dev (2014) 0.94
RNA aptamers that functionally interact with green fluorescent protein and its derivatives. Nucleic Acids Res (2011) 0.92
An RNA aptamer perturbs heat shock transcription factor activity in Drosophila melanogaster. Nucleic Acids Res (2011) 0.89
Multiplexed microcolumn-based process for efficient selection of RNA aptamers. Anal Chem (2013) 0.89
Density-dependent cooperative non-specific binding in solid-phase SELEX affinity selection. Nucleic Acids Res (2013) 0.89
The Drosophila 7SK snRNP and the essential role of dHEXIM in development. Nucleic Acids Res (2012) 0.88
Comparison of femtosecond laser and continuous wave UV sources for protein-nucleic acid crosslinking. Photochem Photobiol (2007) 0.87
Human RNA polymerase II elongation in slow motion: role of the TFIIF RAP74 alpha1 helix in nucleoside triphosphate-driven translocation. Mol Cell Biol (2005) 0.87
Knocking down gene function with an RNA aptamer expressed as part of an intron. Nucleic Acids Res (2010) 0.86
TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages. Nucleic Acids Res (2008) 0.86
Paused Pol II captures enhancer activity and acts as a potent insulator. Genes Dev (2009) 0.85
Distinct transcriptional responses of RNA polymerases I, II and III to aptamers that bind TBP. Nucleic Acids Res (2005) 0.85
The metazoan-specific mediator subunit 26 (Med26) is essential for viability and is found at both active genes and pericentric heterochromatin in Drosophila melanogaster. Mol Cell Biol (2014) 0.83
Fcp1 dephosphorylation of the RNA polymerase II C-terminal domain is required for efficient transcription of heat shock genes. Mol Cell Biol (2012) 0.83
Evolutionary dynamics and population control during in vitro selection and amplification with multiple targets. RNA (2002) 0.83
Expression, function and regulation of Brachyenteron in the short germband insect Tribolium castaneum. Dev Genes Evol (2008) 0.81
A systematic study of the features critical for designing a high avidity multivalent aptamer. Nucleic Acid Ther (2013) 0.80
High-throughput binding characterization of RNA aptamer selections using a microplate-based multiplex microcolumn device. Anal Bioanal Chem (2014) 0.80
How does Pol II overcome the nucleosome barrier? Mol Cell (2002) 0.78
Repairing nucleosomes during transcription. Nat Struct Biol (2003) 0.77
A universal DNA-based protein detection system. J Am Chem Soc (2013) 0.76
Histone H3 lysine 4 trimethylation regulates cotranscriptional H2A variant exchange by Tip60 complexes to maximize gene expression. Proc Natl Acad Sci U S A (2014) 0.76
A new player in Pol II pausing. EMBO J (2013) 0.76
Development of temperature-sensitive mutants of the Drosophila melanogaster P-TEFb (Cyclin T/CDK9) heterodimer using yeast two-hybrid screening. Biochem Biophys Res Commun (2013) 0.75
Corrigendum: Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast. Genome Res (2016) 0.75
Improving slide-based assays by stirring: application of liquid-on-liquid mixing to immunofluorescence staining of polytene chromosomes. J Biochem Biophys Methods (2005) 0.75
Profile of John T. Lis. Interviewed by Kristie Nybo. Biotechniques (2012) 0.75