Published in BMC Genomics on April 27, 2009
microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. Proc Natl Acad Sci U S A (2010) 2.25
The miR-15/107 group of microRNA genes: evolutionary biology, cellular functions, and roles in human diseases. J Mol Biol (2010) 2.20
New methods for next generation sequencing based microRNA expression profiling. BMC Genomics (2010) 1.38
miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments. BMC Bioinformatics (2012) 1.27
Transcriptome-wide analysis of small RNA expression in early zebrafish development. RNA (2012) 1.13
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. BMC Genomics (2010) 1.11
A novel mutation within the MIR96 gene causes non-syndromic inherited hearing loss in an Italian family by altering pre-miRNA processing. Hum Mol Genet (2011) 1.03
Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development. BMC Genomics (2012) 1.02
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Characterization and comparative profiling of MiRNA transcriptomes in bighead carp and silver carp. PLoS One (2011) 0.98
Integrative analysis of next generation sequencing for small non-coding RNAs and transcriptional regulation in Myelodysplastic Syndromes. BMC Med Genomics (2011) 0.97
Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology. PLoS One (2013) 0.97
MicroRNA in teleost fish. Genome Biol Evol (2014) 0.93
Control by a hair's breadth: the role of microRNAs in the skin. Cell Mol Life Sci (2012) 0.90
Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. PLoS One (2012) 0.90
A critical appraisal of the use of microRNA data in phylogenetics. Proc Natl Acad Sci U S A (2014) 0.89
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Global analysis of the small RNA transcriptome in different ploidies and genomic combinations of a vertebrate complex--the Squalius alburnoides. PLoS One (2012) 0.88
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Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut. PLoS One (2013) 0.86
HuB (elavl2) mRNA is restricted to the germ cells by post-transcriptional mechanisms including stabilisation of the message by DAZL. PLoS One (2011) 0.83
What Next? The Next Transit from Biology to Diagnostics: Next Generation Sequencing for Immunogenetics. Transfus Med Hemother (2011) 0.82
Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish. BMC Genomics (2015) 0.82
MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated zebrafish brain tissue. BMC Genomics (2011) 0.82
MicroRNA-146 function in the innate immune transcriptome response of zebrafish embryos to Salmonella typhimurium infection. BMC Genomics (2013) 0.82
Evolution and genomic organization of muscle microRNAs in fish genomes. BMC Evol Biol (2014) 0.80
Dre-miR-2188 targets Nrp2a and mediates proper intersegmental vessel development in zebrafish embryos. PLoS One (2012) 0.80
Effects of short-term exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin on microRNA expression in zebrafish embryos. Toxicol Appl Pharmacol (2012) 0.78
Temperature during early development has long-term effects on microRNA expression in Atlantic cod. BMC Genomics (2015) 0.78
Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing. BMC Genomics (2016) 0.78
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The crucial role and regulations of miRNAs in zebrafish development. Protoplasma (2016) 0.76
Conserved and highly expressed tRNA derived fragments in zebrafish. BMC Mol Biol (2015) 0.75
Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing. J Mol Endocrinol (2014) 0.75
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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell (2005) 96.87
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The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell (1993) 64.62
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An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science (2001) 44.16
Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci U S A (2006) 42.38
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Identification of tissue-specific microRNAs from mouse. Curr Biol (2002) 34.55
An extensive class of small RNAs in Caenorhabditis elegans. Science (2001) 34.17
A mammalian microRNA expression atlas based on small RNA library sequencing. Cell (2007) 34.03
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet (2008) 32.08
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Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science (2006) 18.14
The microRNAs of Caenorhabditis elegans. Genes Dev (2003) 17.70
Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science (2005) 16.84
MicroRNA expression in zebrafish embryonic development. Science (2005) 15.52
Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2. Cell (2007) 12.72
Identification of virus-encoded microRNAs. Science (2004) 12.56
miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell Metab (2006) 12.41
MicroRNA-133 controls cardiac hypertrophy. Nat Med (2007) 11.68
Estimating the population size for capture-recapture data with unequal catchability. Biometrics (1987) 11.61
MicroRNAs regulate brain morphogenesis in zebrafish. Science (2005) 11.16
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res (2008) 10.18
Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol (2008) 10.17
MicroRNAs direct rapid deadenylation of mRNA. Proc Natl Acad Sci U S A (2006) 10.11
Ribo-gnome: the big world of small RNAs. Science (2005) 10.10
MicroRNA functions in animal development and human disease. Development (2005) 8.41
Modulation of miR-155 and miR-125b levels following lipopolysaccharide/TNF-alpha stimulation and their possible roles in regulating the response to endotoxin shock. J Immunol (2007) 8.05
The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol Cell (2007) 7.99
The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis. Nat Cell Biol (2008) 7.86
Diversity of microRNAs in human and chimpanzee brain. Nat Genet (2006) 6.57
Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing. Methods (2008) 6.22
miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells. BMC Med (2008) 5.91
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev (2007) 4.95
The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution. Nat Struct Mol Biol (2008) 4.88
MicroRNA function: multiple mechanisms for a tiny RNA? RNA (2005) 4.78
Mechanisms of microRNA-mediated gene regulation in animal cells. Trends Genet (2007) 4.73
The real-time polymerase chain reaction. Mol Aspects Med (2006) 4.61
MicroRNAs: novel regulators involved in the pathogenesis of psoriasis? PLoS One (2007) 3.96
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res (2008) 3.74
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol (2004) 3.66
Retracted Anti-apoptotic function of a microRNA encoded by the HSV-1 latency-associated transcript. Nature (2006) 3.47
Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol (2008) 3.43
The birth and death of microRNA genes in Drosophila. Nat Genet (2008) 3.22
The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes Dev (2005) 2.94
The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets. J Biotechnol (2008) 2.89
Cloning and expression of new microRNAs from zebrafish. Nucleic Acids Res (2006) 2.58
Prediction of microRNA targets. Drug Discov Today (2007) 2.46
MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1. Stem Cells (2007) 2.40
Stage-specific expression of microRNAs during Xenopus development. FEBS Lett (2005) 1.92
Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics (2008) 1.92
Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes. Genome Res (2008) 1.66
Identification of 20 microRNAs from Oryza sativa. Nucleic Acids Res (2004) 1.61
Deep sequencing of chicken microRNAs. BMC Genomics (2008) 1.48
moz regulates Hox expression and pharyngeal segmental identity in zebrafish. Development (2004) 1.44
Semaphorin signaling guides cranial neural crest cell migration in zebrafish. Dev Biol (2005) 1.29
MiRNA expression analysis during normal zebrafish development and following inhibition of the Hedgehog and Notch signaling pathways. Dev Dyn (2007) 1.26
miRNAminer: a tool for homologous microRNA gene search. BMC Bioinformatics (2008) 1.21
Cardiac ankyrins: Essential components for development and maintenance of excitable membrane domains in heart. Cardiovasc Res (2006) 1.19
Identification of microRNAs from different tissues of chicken embryo and adult chicken. FEBS Lett (2006) 1.18
Essential roles of a zebrafish prdm1/blimp1 homolog in embryo patterning and organogenesis. Development (2005) 1.15
Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development. BMC Dev Biol (2008) 1.10
Melk-like kinase plays a role in hematopoiesis in the zebra fish. Mol Cell Biol (2005) 1.06
Zebrafish neuropilins are differentially expressed and interact with vascular endothelial growth factor during embryonic vascular development. Dev Dyn (2004) 1.04
The last word: books as a statistical metaphor for microbial communities. Annu Rev Microbiol (2007) 1.02
Genomic organization of zebrafish microRNAs. BMC Genomics (2008) 1.00
Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature (2009) 5.90
Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification. Proc Natl Acad Sci U S A (2013) 1.75
Indexing and retrieving DICOM data in disperse and unstructured archives. Int J Comput Assist Radiol Surg (2008) 1.69
Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure. PLoS One (2007) 1.60
MicroRNA expression variability in human cervical tissues. PLoS One (2010) 1.47
Species-specific codon context rules unveil non-neutrality effects of synonymous mutations. PLoS One (2011) 1.44
Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp. Genome Res (2003) 1.44
Comparative genomics of wild type yeast strains unveils important genome diversity. BMC Genomics (2008) 1.43
Lack of microRNA-101 causes E-cadherin functional deregulation through EZH2 up-regulation in intestinal gastric cancer. J Pathol (2012) 1.30
Comparative context analysis of codon pairs on an ORFeome scale. Genome Biol (2005) 1.28
A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans. Genome Biol (2007) 1.24
High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus. BMC Genomics (2010) 1.22
Evolution of the genetic code in yeasts. Yeast (2006) 1.22
Culture-dependent and culture-independent diversity surveys target different bacteria: a case study in a freshwater sample. Antonie Van Leeuwenhoek (2011) 1.07
Protein translation in Plasmodium parasites. Trends Parasitol (2011) 1.06
Development of the genetic code: insights from a fungal codon reassignment. FEBS Lett (2010) 1.05
Thermal transformation of a layered multifunctional network into a metal-organic framework based on a polymeric organic linker. J Am Chem Soc (2011) 1.05
Critical roles for a genetic code alteration in the evolution of the genus Candida. EMBO J (2007) 1.04
Taking root: enduring effect of rhizosphere bacterial colonization in mangroves. PLoS One (2010) 1.04
The genetic code of the fungal CTG clade. C R Biol (2011) 0.98
Candida albicans CUG mistranslation is a mechanism to create cell surface variation. MBio (2013) 0.97
Automatic filtering and substantiation of drug safety signals. PLoS Comput Biol (2012) 0.96
Genetic code ambiguity: an unexpected source of proteome innovation and phenotypic diversity. Curr Opin Microbiol (2009) 0.95
Combined retrograde flexible ureteroscopic lithotripsy with holmium YAG laser for renal calculi associated with ipsilateral ureteral stones. J Endourol (2009) 0.95
A genetic code alteration is a phenotype diversity generator in the human pathogen Candida albicans. PLoS One (2007) 0.95
A gene from the mesophilic bacterium Dehalococcoides ethenogenes encodes a novel mannosylglycerate synthase. J Bacteriol (2004) 0.94
An instrument-free method for the demonstration of efflux pump activity of bacteria. In Vivo (2006) 0.94
Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen. Proc Natl Acad Sci U S A (2011) 0.94
Genetic diversity and population structure of Saccharomyces cerevisiae strains isolated from different grape varieties and winemaking regions. PLoS One (2012) 0.93
Bacterial diversity from the source to the tap: a comparative study based on 16S rRNA gene-DGGE and culture-dependent methods. FEMS Microbiol Ecol (2012) 0.91
The [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough is a bacterial lipoprotein lacking a typical lipoprotein signal peptide. FEBS Lett (2007) 0.91
Ethanol exposure induces upregulation of specific microRNAs in zebrafish embryos. Toxicol Sci (2012) 0.90
mRNA secondary structure optimization using a correlated stem-loop prediction. Nucleic Acids Res (2013) 0.89
Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters. FEMS Microbiol Ecol (2013) 0.89
Surfactants as microbicides and contraceptive agents: a systematic in vitro study. PLoS One (2008) 0.88
Yeast as a model organism for studying the evolution of non-standard genetic codes. Brief Funct Genomic Proteomic (2004) 0.88
Low Complexity Regions behave as tRNA sponges to help co-translational folding of plasmodial proteins. FEBS Lett (2010) 0.88
Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening. BMC Genomics (2012) 0.88
EuGene: maximizing synthetic gene design for heterologous expression. Bioinformatics (2012) 0.87
Draft Genome Sequence of Serratia fonticola LMG 7882T Isolated from Freshwater. Genome Announc (2013) 0.87
Liver hepcidin mRNA expression is inappropriately low in alcoholic patients compared with healthy controls. Eur J Gastroenterol Hepatol (2012) 0.86
Next-generation sequencing of miRNAs with Roche 454 GS-FLX technology: steps for a successful application. Methods Mol Biol (2012) 0.86
Genotyping of Saccharomyces cerevisiae strains by interdelta sequence typing using automated microfluidics. Electrophoresis (2011) 0.84
Low level genome mistranslations deregulate the transcriptome and translatome and generate proteotoxic stress in yeast. BMC Biol (2012) 0.84
Tetra-pyridinium μ-oxido-di-μ-sulfato-bis-[chloridodioxidomolybdate(VI)]. Acta Crystallogr Sect E Struct Rep Online (2010) 0.83
Differences in the expression pattern of HCN isoforms among mammalian tissues: sources and implications. Mol Biol Rep (2014) 0.83
Tripyridinium cis-tetra-chlorido-dioxido-molybdate(VI) chloride. Acta Crystallogr Sect E Struct Rep Online (2010) 0.82
The yeast PNC1 longevity gene is up-regulated by mRNA mistranslation. PLoS One (2009) 0.82
Computational and statistical methodologies for ORFeome primary structure analysis. Methods Mol Biol (2007) 0.81
A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing. BMC Genomics (2014) 0.80
Differential gene expression analysis in Enchytraeus albidus exposed to natural and chemical stressors at different exposure periods. Ecotoxicology (2011) 0.80
Dre-miR-2188 targets Nrp2a and mediates proper intersegmental vessel development in zebrafish embryos. PLoS One (2012) 0.80
Enchytraeus albidus microarray: enrichment, design, annotation and database (EnchyBASE). PLoS One (2012) 0.79
Purification, crystallization and preliminary X-ray diffraction analysis of the seryl-tRNA synthetase from Candida albicans. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.79
Expression of midkine in ameloblastomas and its correlation with clinicopathologic parameters. Oral Surg Oral Med Oral Pathol Oral Radiol (2012) 0.79
Codon-triplet context unveils unique features of the Candida albicans protein coding genome. BMC Genomics (2007) 0.79
Expression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains. BMC Genomics (2011) 0.78
Genetic variants in ICAM1, PPARGC1A and MTHFR are potentially associated with different phenotypes of diabetic retinopathy. Ophthalmologica (2014) 0.77
Involvement of yeast HSP90 isoforms in response to stress and cell death induced by acetic acid. PLoS One (2013) 0.77
Analysis of the effects of sex hormone background on the rat choroid plexus transcriptome by cDNA microarrays. PLoS One (2013) 0.77
Robotic assisted radical prostatectomy: surgical techniques and outcomes. Int Braz J Urol (2008) 0.77
Stop codon decoding in Candida albicans: from non-standard back to standard. Yeast (2002) 0.76
TRNA mutations that affect decoding fidelity deregulate development and the proteostasis network in zebrafish. RNA Biol (2014) 0.76
A Cloud Architecture for Teleradiology-as-a-Service. Methods Inf Med (2016) 0.76
Spectroelectrochemistry of type II cytochrome c3 on a glycosylated self-assembled monolayer. Langmuir (2006) 0.76
Improving the accuracy of recombinant protein production through integration of bioinformatics, statistical and mass spectrometry methodologies. FEBS J (2015) 0.76
μ-Oxido-bis-[chlorido(4,4'-di-tert-butyl-2,2'-bipyridine-κN,N')dioxido-molybdenum(VI)] 0.2-hydrate. Acta Crystallogr Sect E Struct Rep Online (2011) 0.75
Identification of DLEC1 D215N Somatic Mutation in Formalin Fixed Paraffin Embedded Melanoma and Melanocytic Nevi Specimens. J Skin Cancer (2013) 0.75
Draft Genome Sequence of Serratia fonticola UTAD54, a Carbapenem-Resistant Strain Isolated from Drinking Water. Genome Announc (2013) 0.75
Molecular reconstruction of a fungal genetic code alteration. RNA Biol (2013) 0.75
Correction: Species-Specific Codon Context Rules Unveil Non-Neutrality Effects of Synonymous Mutations. PLoS One (2015) 0.75