Published in DNA Res on June 29, 2010
Nucleotide composition-linked divergence of vertebrate core promoter architecture. Genome Res (2011) 0.96
Urine proteome of autosomal dominant polycystic kidney disease patients. Clin Proteomics (2012) 0.89
Nucleosome occupancy reveals regulatory elements of the CFTR promoter. Nucleic Acids Res (2011) 0.85
Histone H3 lysine 27 acetylation is altered in colon cancer. Clin Proteomics (2014) 0.84
Global analysis of S-nitrosylation sites in the wild type (APP) transgenic mouse brain-clues for synaptic pathology. Mol Cell Proteomics (2014) 0.83
The regulatory repertoire of PLZF and SALL4 in undifferentiated spermatogonia. Development (2016) 0.80
Characterization of the sporophyte-preferential gene promoter from the red alga Porphyra yezoensis using transient gene expression. Mar Biotechnol (NY) (2012) 0.79
Urine proteomes of healthy aging humans reveal extracellular matrix (ECM) alterations and immune system dysfunction. Age (Dordr) (2013) 0.79
Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions. Nat Biotechnol (2016) 0.76
Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis. Proteome Sci (2015) 0.76
Conserved 3' UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition. BMC Genomics (2016) 0.75
A strong neutrophil elastase proteolytic fingerprint marks the carcinoma tumor proteome. Mol Cell Proteomics (2016) 0.75
High-resolution profiling of histone methylations in the human genome. Cell (2007) 85.74
Genome-wide mapping of in vivo protein-DNA interactions. Science (2007) 64.92
Chromatin modifications and their function. Cell (2007) 55.98
The role of chromatin during transcription. Cell (2007) 26.48
High-resolution mapping and characterization of open chromatin across the genome. Cell (2008) 15.93
Dynamic regulation of nucleosome positioning in the human genome. Cell (2008) 15.60
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods (2008) 11.61
A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription. Science (2006) 6.71
ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Res (2009) 5.98
Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell (2008) 4.81
Molecular mechanisms of DNA double strand break repair. Trends Cell Biol (1998) 4.41
NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell (2004) 4.21
An exonuclease protection assay reveals heat-shock element and TATA box DNA-binding proteins in crude nuclear extracts. Nature (1985) 3.76
Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling. Cell (2009) 3.69
hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage. Cell (2005) 3.18
Transcriptional control by PARP-1: chromatin modulation, enhancer-binding, coregulation, and insulation. Curr Opin Cell Biol (2008) 3.18
hnRNP K: one protein multiple processes. Bioessays (2004) 2.96
Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques. Genome Res (2006) 2.82
Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq. BMC Genomics (2008) 2.66
RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers. Cell (2004) 2.57
Heterogeneous nuclear ribonucleoprotein K is a transcription factor. Mol Cell Biol (1996) 2.43
ERK phosphorylation drives cytoplasmic accumulation of hnRNP-K and inhibition of mRNA translation. Nat Cell Biol (2001) 2.14
The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription. Mol Cell Biol (2007) 1.82
Heterogeneous nuclear ribonucleoprotein K is over expressed, aberrantly localised and is associated with poor prognosis in colorectal cancer. Br J Cancer (2006) 1.65
A serine/threonine kinase activity is closely associated with a 65-kDa phosphoprotein specifically recognized by the kappa B enhancer element. J Biol Chem (1991) 1.46
A glimpse into the epigenetic landscape of gene regulation. Curr Opin Genet Dev (2008) 1.41
Transcriptional repression by binding of poly(ADP-ribose) polymerase to promoter sequences. J Biol Chem (2001) 1.37
hPDI: a database of experimental human protein-DNA interactions. Bioinformatics (2009) 1.37
Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events. Nucleic Acids Res (2008) 1.27
Specific binding of poly(ADP-ribose) polymerase-1 to cruciform hairpins. J Mol Biol (2005) 1.22
Altered patterns of expression of members of the heterogeneous nuclear ribonucleoprotein (hnRNP) family in lung cancer. Lung Cancer (2003) 1.22
hDREF regulates cell proliferation and expression of ribosomal protein genes. Mol Cell Biol (2007) 1.12
Protein clusters associated with carcinogenesis, histological differentiation and nodal metastasis in esophageal cancer. Proteomics (2006) 1.11
Dynamic binding of Ku80, Ku70 and NF90 to the IL-2 promoter in vivo in activated T-cells. Nucleic Acids Res (2007) 1.10
Loss-of-function screening by randomized intracellular antibodies: identification of hnRNP-K as a potential target for metastasis. Proc Natl Acad Sci U S A (2007) 1.03
Methods for proteomic analysis of transcription factors. J Chromatogr A (2009) 1.02
Heterogeneous ribonucleoprotein k and thymidine phosphorylase are independent prognostic and therapeutic markers for nasopharyngeal carcinoma. Clin Cancer Res (2008) 0.96
Evidence for heterogeneous nuclear ribonucleoprotein K overexpression in oral squamous cell carcinoma. Br J Cancer (2007) 0.95
An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study. Proteomics Clin Appl (2009) 0.94
Poly(ADP-ribose) Polymerase 1 Interacts with Nuclear Respiratory Factor 1 (NRF-1) and Plays a Role in NRF-1 Transcriptional Regulation. J Biol Chem (2009) 0.92
A short ultraconserved sequence drives transcription from an alternate FBN1 promoter. Int J Biochem Cell Biol (2007) 0.91
A common cis-element in promoters of protein synthesis and cell cycle genes. Acta Biochim Pol (2007) 0.86
Treatment of mice with EGF and orthovanadate activates cytoplasmic and nuclear MAPK, p70S6k, and p90rsk in the liver. J Hepatol (2000) 0.82
Halogenated imidazole derivatives block RNA polymerase II elongation along mitogen inducible genes. BMC Mol Biol (2010) 0.78
hnRNP K: one protein multiple processes. Bioessays (2004) 2.96
Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins. J Mol Biol (2002) 2.53
CENP-C is a structural platform for kinetochore assembly. Curr Biol (2011) 2.52
Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data directed for maximization of analytical reliability. PLoS One (2010) 2.32
A 3' exonuclease that specifically interacts with the 3' end of histone mRNA. Mol Cell (2003) 2.24
Members of the poly (rC) binding protein family stimulate the activity of the c-myc internal ribosome entry segment in vitro and in vivo. Oncogene (2003) 1.83
Association between Hsp90 and the ClC-2 chloride channel upregulates channel function. Am J Physiol Cell Physiol (2005) 1.56
Cildb: a knowledgebase for centrosomes and cilia. Database (Oxford) (2009) 1.35
Suppression of scant identifies Endos as a substrate of greatwall kinase and a negative regulator of protein phosphatase 2A in mitosis. PLoS Genet (2011) 1.33
The transcription factor encyclopedia. Genome Biol (2012) 1.28
The MIA pathway: a tight bond between protein transport and oxidative folding in mitochondria. Biochim Biophys Acta (2012) 1.17
Landscape of the hnRNP K protein-protein interactome. Proteomics (2006) 1.12
Molecular defense mechanisms of Barrett's metaplasia estimated by an integrative genomics. J Mol Med (Berl) (2007) 1.06
Discovery of novel potent ΔF508-CFTR correctors that target the nucleotide binding domain. EMBO Mol Med (2013) 1.04
In vivo evidence for cooperation of Mia40 and Erv1 in the oxidation of mitochondrial proteins. Mol Biol Cell (2012) 1.02
High frequency of BRCA1 founder mutations in Polish women with nonfamilial breast cancer. Fam Cancer (2012) 1.02
Cooperative binding of the hnRNP K three KH domains to mRNA targets. FEBS Lett (2004) 1.01
TNFalpha and TNF receptor 1 expression in the mixed neuronal-glial cultures of hippocampal dentate gyrus exposed to glutamate or trimethyltin. Brain Res (2006) 1.01
Proteome analysis of matrix vesicles isolated from femurs of chicken embryo. Proteomics (2008) 1.00
Pooled sample-based GWAS: a cost-effective alternative for identifying colorectal and prostate cancer risk variants in the Polish population. PLoS One (2012) 1.00
Regulation of Nicotiana tabacum osmotic stress-activated protein kinase and its cellular partner GAPDH by nitric oxide in response to salinity. Biochem J (2010) 0.99
Quantitative detection for low levels of Helicobacter pylori infection in experimentally infected mice by real-time PCR. J Microbiol Methods (2003) 0.97
Peroxiredoxin 6 fails to limit phospholipid peroxidation in lung from Cftr-knockout mice subjected to oxidative challenge. PLoS One (2009) 0.97
The fold recognition of CP2 transcription factors gives new insights into the function and evolution of tumor suppressor protein p53. Cell Cycle (2008) 0.96
Activating mutations in ALK kinase domain confer resistance to structurally unrelated ALK inhibitors in NPM-ALK-positive anaplastic large-cell lymphoma. J Cancer Res Clin Oncol (2014) 0.95
Functional diversification of centrins and cell morphological complexity. J Cell Sci (2007) 0.95
Proteomic characterization of biogenesis and functions of matrix vesicles released from mineralizing human osteoblast-like cells. J Proteomics (2011) 0.95
Structural changes of eIF4E upon binding to the mRNA 5' monomethylguanosine and trimethylguanosine Cap. Biochemistry (2008) 0.94
An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study. Proteomics Clin Appl (2009) 0.94
3'-End processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors. RNA (2013) 0.94
Characterization of hnRNP K protein-RNA interactions. J Mol Biol (2004) 0.93
Lack of evidence for association of primary sclerosing cholangitis and primary biliary cirrhosis with risk alleles for Crohn's disease in Polish patients. BMC Med Genet (2008) 0.92
Oligomerization interface of RAGE receptor revealed by MS-monitored hydrogen deuterium exchange. PLoS One (2013) 0.91
Global proteomic approach unmasks involvement of keratins 8 and 18 in the delivery of cystic fibrosis transmembrane conductance regulator (CFTR)/deltaF508-CFTR to the plasma membrane. Proteomics (2004) 0.90
Three clinical variants of gastroesophageal reflux disease form two distinct gene expression signatures. J Mol Med (Berl) (2006) 0.90
Alzheimer's disease Abeta peptide fragment 10-30 forms a spectrum of metastable oligomers with marked preference for N to N and C to C monomer termini proximity. J Mol Biol (2004) 0.89
Urine proteome of autosomal dominant polycystic kidney disease patients. Clin Proteomics (2012) 0.89
Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1. New Phytol (2013) 0.88
Crohn's disease-associated polymorphism within the PTPN2 gene affects muramyl-dipeptide-induced cytokine secretion and autophagy. Inflamm Bowel Dis (2011) 0.88
A common cis-element in promoters of protein synthesis and cell cycle genes. Acta Biochim Pol (2007) 0.86
Increased expression of ribosomal protein S2 in liver tumors, posthepactomized livers, and proliferating hepatocytes in vitro. Acta Biochim Pol (2002) 0.86
Functional features of gene expression profiles differentiating gastrointestinal stromal tumours according to KIT mutations and expression. BMC Cancer (2009) 0.86
The hppA gene of Helicobacter pylori encodes the class C acid phosphatase precursor. FEBS Lett (2002) 0.85
Helicobacter pylori VacA cytotoxin interacts with fibronectin and alters HeLa cell adhesion and cytoskeletal organization in vitro. FEMS Immunol Med Microbiol (2005) 0.84
Helicobacter pylori protein oxidation influences the colonization process. Int J Med Microbiol (2006) 0.84
Peroxiredoxin-1 protects estrogen receptor α from oxidative stress-induced suppression and is a protein biomarker of favorable prognosis in breast cancer. Breast Cancer Res (2014) 0.83
Homoplasmic MELAS A3243G mtDNA mutation in a colon cancer sample. Mitochondrion (2003) 0.82
Diffprot - software for non-parametric statistical analysis of differential proteomics data. J Proteomics (2012) 0.82
Mitochondrial-related proteomic changes during obesity and fasting in mice are greater in the liver than skeletal muscles. Funct Integr Genomics (2013) 0.82
Up-regulation of human PNPase mRNA by beta-interferon has no effect on protein level in melanoma cell lines. Acta Biochim Pol (2006) 0.82
Two rapid ultra performance liquid chromatography/tandem mass spectrometry (UPLC/MS/MS) methods with common sample pretreatment for therapeutic drug monitoring of immunosuppressants compared to immunoassay. J Chromatogr B Analyt Technol Biomed Life Sci (2013) 0.82
Systematic bioinformatics and experimental validation of yeast complexes reduces the rate of attrition during structural investigations. Structure (2010) 0.82
Adipokines and genetic factors in overweight or obese but metabolically healthy Polish women. Neuro Endocrinol Lett (2010) 0.81
Increased mitochondrial gene expression during L6 cell myogenesis is accelerated by insulin. Int J Biochem Cell Biol (2005) 0.81
Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length. Biochim Biophys Acta (2006) 0.81
Association of genetic variation in the NR1H4 gene, encoding the nuclear bile acid receptor FXR, with inflammatory bowel disease. BMC Res Notes (2012) 0.81
Pre-analytical-related variability influencing serum peptide profiles demonstrated in a mass spectrometry-based search for colorectal and prostate cancer biomarkers. Acta Biochim Pol (2013) 0.81
Association between gynecomastia and aromatase (CYP19) polymorphisms. Eur J Endocrinol (2008) 0.81
Common low-penetrance risk variants associated with breast cancer in Polish women. BMC Cancer (2013) 0.81
Intertwined structured and unstructured regions of exRAGE identified by monitoring hydrogen-deuterium exchange. J Mol Biol (2010) 0.81
Large intra- and inter-individual variability of genes expression levels limits potential predictive value of molecular diagnosis of dysplasia in Barrett's esophagus. J Mol Med (Berl) (2007) 0.81
Binding studies of truncated variants of the Aβ peptide to the V-domain of the RAGE receptor reveal Aβ residues responsible for binding. Biochim Biophys Acta (2011) 0.81
The diverse involvement of heterogeneous nuclear ribonucleoprotein K in mitochondrial response to insulin. FEBS Lett (2006) 0.80
Effect of chronic mild stress and imipramine on the proteome of the rat dentate gyrus. J Neurochem (2010) 0.80
Tip-alpha (hp0596 gene product) is a highly immunogenic Helicobacter pylori protein involved in colonization of mouse gastric mucosa. Curr Microbiol (2008) 0.80
Gene expression alterations induced by low molecular weight heparin during bowel anastomosis healing in rats. Acta Biochim Pol (2011) 0.79
jChIP: a graphical environment for exploratory ChIP-Seq data analysis. BMC Res Notes (2014) 0.79