Published in Proc Natl Acad Sci U S A on April 15, 2010
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High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region. PLoS One (2012) 1.29
The progeny of Arabidopsis thaliana plants exposed to salt exhibit changes in DNA methylation, histone modifications and gene expression. PLoS One (2012) 1.28
N6-methyldeoxyadenosine marks active transcription start sites in chlamydomonas. Cell (2015) 1.28
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence. Proc Natl Acad Sci U S A (2013) 1.28
Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2012) 1.27
DNA methylation and methylcytosine oxidation in cell fate decisions. Curr Opin Cell Biol (2013) 1.24
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Comparative analyses of DNA methylation and sequence evolution using Nasonia genomes. Mol Biol Evol (2011) 1.20
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Quantitative epigenetics through epigenomic perturbation of isogenic lines. Genetics (2011) 1.18
Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis. Genome Biol (2012) 1.16
Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. PLoS Genet (2014) 1.15
The HARE-HTH and associated domains: novel modules in the coordination of epigenetic DNA and protein modifications. Cell Cycle (2012) 1.14
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Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity. Genome Res (2014) 1.12
Apple skin patterning is associated with differential expression of MYB10. BMC Plant Biol (2011) 1.11
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression. BMC Genomics (2012) 1.10
S phase-dependent interaction with DNMT1 dictates the role of UHRF1 but not UHRF2 in DNA methylation maintenance. Cell Res (2011) 1.09
DNA methylation and transcriptional noise. Epigenetics Chromatin (2013) 1.09
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Genome-wide DNA methylation changes with age in disease-free human skeletal muscle. Aging Cell (2013) 1.08
Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies. Epigenetics (2013) 1.08
Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements. Elife (2015) 1.07
A conserved role for intragenic DNA methylation in alternative pre-mRNA splicing. Transcription (2012) 1.07
Widespread natural variation of DNA methylation within angiosperms. Genome Biol (2016) 1.06
Patterns and evolution of nucleotide landscapes in seed plants. Plant Cell (2012) 1.04
Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences. Proc Natl Acad Sci U S A (2011) 1.04
Epigenetic virtues of chromodomains. Crit Rev Biochem Mol Biol (2011) 1.03
Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates. Genome Res (2011) 1.03
Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing. Epigenetics (2013) 1.02
Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc. PeerJ (2013) 1.02
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Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications. Nucleic Acids Res (2011) 1.02
Intrauterine calorie restriction affects placental DNA methylation and gene expression. Physiol Genomics (2013) 1.01
Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax. Genome Biol (2012) 1.00
On the origin and evolutionary consequences of gene body DNA methylation. Proc Natl Acad Sci U S A (2016) 1.00
Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells. Nucleic Acids Res (2013) 0.99
Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs. Nucleic Acids Res (2013) 0.98
Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids. Genome Biol (2013) 0.98
Epigenetic regulation in plants. Cold Spring Harb Perspect Biol (2014) 0.98
DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation. Genome Biol Evol (2010) 0.97
UHRF1 phosphorylation by cyclin A2/cyclin-dependent kinase 2 is required for zebrafish embryogenesis. Mol Biol Cell (2011) 0.97
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome. Proc Natl Acad Sci U S A (2015) 0.97
Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes. Cell (2014) 0.96
Developmentally programmed 3' CpG island methylation confers tissue- and cell-type-specific transcriptional activation. Mol Cell Biol (2013) 0.96
5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni. Parasit Vectors (2013) 0.96
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Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell (2006) 15.24
Insights into social insects from the genome of the honeybee Apis mellifera. Nature (2006) 13.67
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (2002) 11.11
Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science (2010) 8.46
The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA. Nature (2007) 8.17
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Epigenetic inheritance in plants. Nature (2007) 7.40
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Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res (2002) 6.36
Chromatin organization marks exon-intron structure. Nat Struct Mol Biol (2009) 5.90
Nucleosome positioning as a determinant of exon recognition. Nat Struct Mol Biol (2009) 5.14
Nutritional control of reproductive status in honeybees via DNA methylation. Science (2008) 5.13
Genome-wide demethylation of Arabidopsis endosperm. Science (2009) 4.07
Nucleosomes are well positioned in exons and carry characteristic histone modifications. Genome Res (2009) 3.95
The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol (2007) 3.70
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol (2005) 3.54
The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature (2008) 3.28
Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes. Genome Res (2004) 3.09
Functional CpG methylation system in a social insect. Science (2006) 2.95
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Liver growth in the embryo and during liver regeneration in zebrafish requires the cell cycle regulator, uhrf1. Proc Natl Acad Sci U S A (2007) 1.72
Transcriptional silencing and reactivation in transgenic zebrafish. Genetics (2009) 1.67
Targeted disruption of Np95 gene renders murine embryonic stem cells hypersensitive to DNA damaging agents and DNA replication blocks. J Biol Chem (2002) 1.62
Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet (2008) 1.54
Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration. Dev Biol (2009) 1.40
Chloroplast DNA methylation and inheritance in Chlamydomonas. Genes Dev (2001) 1.25
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DNA methylation with a sting: an active DNA methylation system in the honeybee. Bioessays (2007) 1.17
A chloroplast-resident DNA methyltransferase is responsible for hypermethylation of chloroplast genes in Chlamydomonas maternal gametes. Proc Natl Acad Sci U S A (2002) 1.07
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ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science (2003) 9.54
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature (2002) 9.51
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature (2010) 8.84
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Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet (2006) 5.81
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Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol (2002) 5.47
Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation. Cell Stem Cell (2008) 5.40
Relationship between nucleosome positioning and DNA methylation. Nature (2010) 5.27
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell (2006) 5.22
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Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication. Genes Dev (2006) 5.15
Pack-MULE transposable elements mediate gene evolution in plants. Nature (2004) 5.13
RNA silencing genes control de novo DNA methylation. Science (2004) 5.11
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (2003) 5.00
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell (2006) 4.82
DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci (2002) 4.72
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Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol (2004) 4.45
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell (2002) 4.31
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol (2007) 4.30
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Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science (2006) 3.87
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Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J (2004) 3.51
DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J (2002) 3.50
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Functional cooperation between HP1 and DNMT1 mediates gene silencing. Genes Dev (2007) 3.43
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An active DNA transposon family in rice. Nature (2003) 3.24
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Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res (2004) 2.28
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Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell (2012) 2.19
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Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev (2008) 2.16
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LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A (2006) 2.08