Published in PLoS One on August 12, 2009
Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection. PLoS Biol (2012) 3.19
Analysis of copy number variations among diverse cattle breeds. Genome Res (2010) 2.02
A whole genome Bayesian scan for adaptive genetic divergence in West African cattle. BMC Genomics (2009) 1.65
Insights into the genetic history of French cattle from dense SNP data on 47 worldwide breeds. PLoS One (2010) 1.51
Genomic characteristics of cattle copy number variations. BMC Genomics (2011) 1.48
Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle. BMC Genomics (2011) 1.47
Four loci explain 83% of size variation in the horse. PLoS One (2012) 1.40
Identification of selection signatures in cattle breeds selected for dairy production. Genetics (2010) 1.39
Classic selective sweeps revealed by massive sequencing in cattle. PLoS Genet (2014) 1.33
Signatures of diversifying selection in European pig breeds. PLoS Genet (2013) 1.30
Detecting selection in population trees: the Lewontin and Krakauer test extended. Genetics (2010) 1.27
Selection for complex traits leaves little or no classic signatures of selection. BMC Genomics (2014) 1.13
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping. BMC Genomics (2013) 1.11
Effect of artificial selection on runs of homozygosity in u.s. Holstein cattle. PLoS One (2013) 1.09
A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number. Genetics (2013) 1.08
WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle. BMC Genomics (2015) 1.07
Genomic signatures reveal new evidences for selection of important traits in domestic cattle. Mol Biol Evol (2014) 1.07
Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition. BMC Genet (2012) 1.07
Genetic characterization of a core collection of flax (Linum usitatissimum L.) suitable for association mapping studies and evidence of divergent selection between fiber and linseed types. BMC Plant Biol (2013) 1.02
A quasi-exclusive European ancestry in the Senepol tropical cattle breed highlights the importance of the slick locus in tropical adaptation. PLoS One (2012) 1.02
Detecting loci under recent positive selection in dairy and beef cattle by combining different genome-wide scan methods. PLoS One (2013) 1.01
Detection of selective sweeps in cattle using genome-wide SNP data. BMC Genomics (2013) 1.01
Combining evidence of selection with association analysis increases power to detect regions influencing complex traits in dairy cattle. BMC Genomics (2012) 0.96
Evaluation of approaches for identifying population informative markers from high density SNP chips. BMC Genet (2011) 0.96
Composite selection signals can localize the trait specific genomic regions in multi-breed populations of cattle and sheep. BMC Genet (2014) 0.95
Genomic changes under rapid evolution: selection for parasitoid resistance. Proc Biol Sci (2014) 0.93
A genome-wide scan for signatures of differential artificial selection in ten cattle breeds. BMC Genomics (2013) 0.91
Deciphering the genetic basis of animal domestication. Proc Biol Sci (2011) 0.91
An interpretive review of selective sweep studies in Bos taurus cattle populations: identification of unique and shared selection signals across breeds. Front Genet (2015) 0.90
Genome-wide detection of selective signature in Chinese Holstein. PLoS One (2013) 0.90
Selection signature analysis implicates the PC1/PCSK1 region for chicken abdominal fat content. PLoS One (2012) 0.88
Understanding crop genetic diversity under modern plant breeding. Theor Appl Genet (2015) 0.88
Application of selection mapping to identify genomic regions associated with dairy production in sheep. PLoS One (2014) 0.87
Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle. Genet Sel Evol (2014) 0.87
Genome-wide genetic diversity and differentially selected regions among Suffolk, Rambouillet, Columbia, Polypay, and Targhee sheep. PLoS One (2013) 0.86
Deciphering the genetic blueprint behind Holstein milk proteins and production. Genome Biol Evol (2014) 0.86
Using regulatory and epistatic networks to extend the findings of a genome scan: identifying the gene drivers of pigmentation in merino sheep. PLoS One (2011) 0.86
Identification of selection signatures in livestock species. Genet Mol Biol (2014) 0.85
A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds. BMC Genet (2014) 0.85
Typing late prehistoric cows and bulls--osteology and genetics of cattle at the Eketorp ringfort on the Öland island in Sweden. PLoS One (2011) 0.83
Signatures of selection in five Italian cattle breeds detected by a 54K SNP panel. Mol Biol Rep (2014) 0.83
Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon. Comp Funct Genomics (2012) 0.83
Genomic adaptation of admixed dairy cattle in East Africa. Front Genet (2014) 0.82
Genomic Footprints in Selected and Unselected Beef Cattle Breeds in Korea. PLoS One (2016) 0.82
Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows. BMC Genet (2015) 0.81
Genome wide screening of candidate genes for improving piglet birth weight using high and low estimated breeding value populations. Int J Biol Sci (2014) 0.81
Applications in the search for genomic selection signatures in fish. Front Genet (2015) 0.81
Detection of selection signatures in dairy and beef cattle using high-density genomic information. Genet Sel Evol (2015) 0.81
Characterizing homozygosity across United States, New Zealand and Australian Jersey cow and bull populations. BMC Genomics (2015) 0.81
Genomic data as the "hitchhiker's guide" to cattle adaptation: tracking the milestones of past selection in the bovine genome. Front Genet (2015) 0.81
Multi-breed and multi-trait co-association analysis of meat tenderness and other meat quality traits in three French beef cattle breeds. Genet Sel Evol (2016) 0.80
Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates. Genetics (2015) 0.80
A Bayesian outlier criterion to detect SNPs under selection in large data sets. PLoS One (2010) 0.80
Genome-wide scan for selection signatures in six cattle breeds in South Africa. Genet Sel Evol (2015) 0.79
Signatures of selection in tilapia revealed by whole genome resequencing. Sci Rep (2015) 0.79
Composite Selection Signals for Complex Traits Exemplified Through Bovine Stature Using Multibreed Cohorts of European and African Bos taurus. G3 (Bethesda) (2015) 0.79
Regional regulation of transcription in the bovine genome. PLoS One (2011) 0.78
Information content in genome-wide scans: concordance between patterns of genetic differentiation and linkage mapping associations. BMC Genomics (2011) 0.78
Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds. Genetics (2016) 0.78
C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle. Nat Commun (2015) 0.77
Recent artificial selection in U.S. Jersey cattle impacts autozygosity levels of specific genomic regions. BMC Genomics (2015) 0.77
A genome-wide scan for selection signatures in Yorkshire and Landrace pigs based on sequencing data. Anim Genet (2014) 0.77
A Meta-Assembly of Selection Signatures in Cattle. PLoS One (2016) 0.77
Breeding signature of combining ability improvement revealed by a genomic variation map from recurrent selection population in Brassica napus. Sci Rep (2016) 0.76
Detection of selection signatures in Piemontese and Marchigiana cattle, two breeds with similar production aptitudes but different selection histories. Genet Sel Evol (2015) 0.76
A genome scan for selection signatures in pigs. PLoS One (2015) 0.75
Genomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep. Genet Mol Biol (2014) 0.75
Analysis of extended haplotype in Korean cattle (Hanwoo) population. BMB Rep (2016) 0.75
Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle. BMC Genet (2016) 0.75
On the performance of tests for the detection of signatures of selection: a case study with the Spanish autochthonous beef cattle populations. Genet Sel Evol (2016) 0.75
Use of canonical discriminant analysis to study signatures of selection in cattle. Genet Sel Evol (2016) 0.75
Genetic Variation and Breeding Signature in Mass Selection Lines of the Pacific Oyster (Crassostrea gigas) Assessed by SNP Markers. PLoS One (2016) 0.75
Selection Signatures in Four Lignin Genes from Switchgrass Populations Divergently Selected for In Vitro Dry Matter Digestibility. PLoS One (2016) 0.75
A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds. Genet Sel Evol (2016) 0.75
Identification of selective sweeps reveals divergent selection between Chinese Holstein and Simmental cattle populations. Genet Sel Evol (2016) 0.75
The Bos taurus-Bos indicus balance in fertility and milk related genes. PLoS One (2017) 0.75
Signatures of Selection for Environmental Adaptation and Zebu × Taurine Hybrid Fitness in East African Shorthorn Zebu. Front Genet (2017) 0.75
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CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics (2007) 16.52
Interrogating a high-density SNP map for signatures of natural selection. Genome Res (2002) 10.33
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Development and characterization of a high density SNP genotyping assay for cattle. PLoS One (2009) 7.06
Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res (2002) 5.45
Estimating F-statistics. Annu Rev Genet (2002) 4.30
Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. PLoS Genet (2009) 4.24
Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle. Genetics (2008) 4.20
Power of daughter and granddaughter designs for determining linkage between marker loci and quantitative trait loci in dairy cattle. J Dairy Sci (1990) 4.12
Measures of human population structure show heterogeneity among genomic regions. Genome Res (2005) 3.68
GENOME: a rapid coalescent-based whole genome simulator. Bioinformatics (2007) 3.65
Likelihood-based inference for genetic correlation coefficients. Theor Popul Biol (2003) 3.57
Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proc Natl Acad Sci U S A (2004) 2.72
Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle. Genome Res (2005) 2.51
Genetic and haplotypic structure in 14 European and African cattle breeds. Genetics (2007) 2.18
Estrogen signaling multiple pathways to impact gene transcription. Curr Genomics (2006) 2.14
Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat content. Proc Natl Acad Sci U S A (2002) 2.01
CD163 is the macrophage scavenger receptor for native and chemically modified hemoglobins in the absence of haptoglobin. Blood (2005) 1.86
Mapping of a milk production quantitative trait locus to a 420-kb region on bovine chromosome 6. Genetics (2004) 1.69
Evolutionary dynamics of the human ABO gene. Hum Genet (2008) 1.51
A genome map of divergent artificial selection between Bos taurus dairy cattle and Bos taurus beef cattle. Anim Genet (2008) 1.49
Widespread balancing selection and pathogen-driven selection at blood group antigen genes. Genome Res (2008) 1.40
The C2B domain of synaptotagmin I is a Ca2+-binding module. Biochemistry (2001) 1.38
The role of the bovine growth hormone receptor and prolactin receptor genes in milk, fat and protein production in Finnish Ayrshire dairy cattle. Genetics (2006) 1.30
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A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions. Bioinformatics (2006) 1.16
Fetal hemoglobin in sickle cell anemia: Bayesian modeling of genetic associations. Am J Hematol (2008) 1.11
The effect of nutritional management of the dairy cow on reproductive efficiency. Anim Reprod Sci (2006) 1.07
Artificial selection and maintenance of genetic variance in the global dairy cow population. Philos Trans R Soc Lond B Biol Sci (2005) 1.05
Fine mapping of quantitative trait Loci on bovine chromosome 6 affecting calving difficulty. J Dairy Sci (2008) 1.00
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Biology of epidermal and hair pigmentation in cattle: a mini-review. Vet Dermatol (2007) 0.99
Mechanisms mediating oestradiol modulation of the developing brain. J Neuroendocrinol (2008) 0.99
Invited review: New perspectives on the roles of nutrition and metabolic priorities in the subfertility of high-producing dairy cows. J Dairy Sci (2007) 0.95
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Functional analysis of cyclin D2 and p27(Kip1) in cyclin D2 transgenic mouse mammary gland during development. Oncogene (2002) 0.91
Canonical pathways and networks regulated by estrogen in the bovine mammary gland. Funct Integr Genomics (2007) 0.90
Genetic and phenotypic relationships among endocrine and traditional fertility traits and production traits in Holstein-Friesian dairy cows. J Dairy Sci (2002) 0.88
Genetic parameters for body condition score, body weight, milk yield, and fertility estimated using random regression models. J Dairy Sci (2003) 0.83
Characterization of the DGAT1 K232A and variable number of tandem repeat polymorphisms in French dairy cattle. J Dairy Sci (2007) 0.83
Effects of hormones and growth factors on TGF-beta1 expression in bovine mammary epithelial cells. J Dairy Res (2005) 0.82
Holstein's milk detection in cheeses inferred from melanocortin receptor 1 (MC1R) gene polymorphism. J Dairy Sci (2002) 0.82
Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. Nat Genet (2008) 30.20
A genome-wide association study of global gene expression. Nat Genet (2007) 22.98
International network of cancer genome projects. Nature (2010) 20.35
A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25. Nature (2008) 16.10
Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer's disease. Nat Genet (2009) 14.86
Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma. Nature (2007) 14.43
Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk. Nature (2011) 13.25
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. Nature (2011) 13.23
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia. Nature (2011) 13.18
Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4. PLoS Genet (2007) 8.63
Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia. Nat Genet (2011) 6.43
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. Brief Bioinform (2012) 6.06
Lung cancer susceptibility locus at 5p15.33. Nat Genet (2008) 5.99
A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15. Nat Genet (2007) 4.61
A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance. Nat Genet (2012) 4.37
Common variants at 10 genomic loci influence hemoglobin A₁(C) levels via glycemic and nonglycemic pathways. Diabetes (2010) 4.07
Genome-wide association study identifies three loci associated with melanoma risk. Nat Genet (2009) 3.89
Common variants at five new loci associated with early-onset inflammatory bowel disease. Nat Genet (2009) 3.82
Genetic structure of Europeans: a view from the North-East. PLoS One (2009) 3.46
Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure. Nat Genet (2011) 3.40
BLUEPRINT to decode the epigenetic signature written in blood. Nat Biotechnol (2012) 3.24
Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. Nat Genet (2011) 3.18
Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia. Nat Genet (2012) 3.08
Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study. J Natl Cancer Inst (2011) 3.05
Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3. Nat Genet (2010) 2.96
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Genome-wide association study identifies genetic variation in neurocan as a susceptibility factor for bipolar disorder. Am J Hum Genet (2011) 2.71
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res (2008) 2.70
Common susceptibility alleles are unlikely to contribute as strongly as the FV and ABO loci to VTE risk: results from a GWAS approach. Blood (2009) 2.64
Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). J Infect Dis (2009) 2.53
Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy. Nat Genet (2013) 2.44
Recommendations for the design and analysis of epigenome-wide association studies. Nat Methods (2013) 2.19
Genome-wide association study of major recurrent depression in the U.K. population. Am J Psychiatry (2010) 2.17
Three genome-wide association studies and a linkage analysis identify HERC2 as a human iris color gene. Am J Hum Genet (2008) 2.09
Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. Nat Biotechnol (2007) 2.06
Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis. Proc Natl Acad Sci U S A (2009) 2.03
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A common variant on chromosome 11q13 is associated with atopic dermatitis. Nat Genet (2009) 1.91
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A common reference population from four European Holstein populations increases reliability of genomic predictions. Genet Sel Evol (2011) 1.74
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A whole genome Bayesian scan for adaptive genetic divergence in West African cattle. BMC Genomics (2009) 1.65
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Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map. Genetics (2008) 1.36
Comprehensive linkage and association analyses identify haplotype, near to the TNFSF15 gene, significantly associated with spondyloarthritis. PLoS Genet (2009) 1.36
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A bovine whole-genome radiation hybrid panel and outline map. Mamm Genome (2002) 1.31
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High-density marker imputation accuracy in sixteen French cattle breeds. Genet Sel Evol (2013) 1.26
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Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16. Nat Genet (2013) 1.23
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Genetic determination and linkage mapping of Plasmodium falciparum malaria related traits in Senegal. PLoS One (2008) 1.20
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Atypical structure and phylogenomic evolution of the new eutherian oocyte- and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene family. Genomics (2007) 1.16
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