Published in Plant Cell on April 03, 2012
Systems analysis of auxin transport in the Arabidopsis root apex. Plant Cell (2014) 1.87
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RootAnalyzer: A Cross-Section Image Analysis Tool for Automated Characterization of Root Cells and Tissues. PLoS One (2015) 1.40
MorphoGraphX: A platform for quantifying morphogenesis in 4D. Elife (2015) 1.27
Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales. Plant Cell (2012) 1.25
A developmental framework for complex plasmodesmata formation revealed by large-scale imaging of the Arabidopsis leaf epidermis. Plant Cell (2013) 0.96
Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots. Proc Natl Acad Sci U S A (2013) 0.95
Vertex-element models for anisotropic growth of elongated plant organs. Front Plant Sci (2013) 0.89
PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification. Front Plant Sci (2015) 0.86
Abscisic acid regulates root growth under osmotic stress conditions via an interacting hormonal network with cytokinin, ethylene and auxin. New Phytol (2016) 0.82
A novel dictionary based computer vision method for the detection of cell nuclei. PLoS One (2013) 0.82
Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas. Plant Cell (2015) 0.79
ER stress signaling requires RHD3, a functionally conserved ER-shaping GTPase. J Cell Sci (2014) 0.79
Real-time Analysis of Lateral Root Organogenesis in Arabidopsis. Bio Protoc (2015) 0.75
Precision Automation of Cell Type Classification and Sub-Cellular Fluorescence Quantification from Laser Scanning Confocal Images. Front Plant Sci (2016) 0.75
Identification of Two New Mechanisms That Regulate Fruit Growth by Cell Expansion in Tomato. Front Plant Sci (2017) 0.75
Imaging intracellular fluorescent proteins at nanometer resolution. Science (2006) 38.97
Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency. Proc Natl Acad Sci U S A (2000) 6.81
Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr Biol (2005) 6.35
AtPIN2 defines a locus of Arabidopsis for root gravitropism control. EMBO J (1998) 5.91
Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution. Nat Methods (2010) 4.47
Dissection of Arabidopsis ADP-RIBOSYLATION FACTOR 1 function in epidermal cell polarity. Plant Cell (2005) 2.90
A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature (2012) 2.86
The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol (2011) 2.74
Colocalization of fluorescent markers in confocal microscope images of plant cells. Nat Protoc (2008) 2.53
Micropilot: automation of fluorescence microscopy-based imaging for systems biology. Nat Methods (2011) 1.59
The 39 steps: a cautionary tale of quantitative 3-D fluorescence microscopy. Biotechniques (2000) 1.56
Model-based resolution: applying the theory in quantitative microscopy. Appl Opt (2000) 1.28
Positional information by differential endocytosis splits auxin response to drive Arabidopsis root meristem growth. Curr Biol (2011) 1.16
Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray. Plant Methods (2010) 1.02
The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol (2008) 3.69
Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal. Nat Cell Biol (2005) 3.61
Dissecting Arabidopsis lateral root development. Trends Plant Sci (2003) 3.52
Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis. Development (2007) 3.31
Ethylene upregulates auxin biosynthesis in Arabidopsis seedlings to enhance inhibition of root cell elongation. Plant Cell (2007) 3.14
Arabidopsis lateral root development: an emerging story. Trends Plant Sci (2009) 3.08
A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature (2012) 2.86
A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Curr Biol (2010) 2.81
High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiol (2009) 2.78
Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol (2003) 2.73
Structure-function analysis of the presumptive Arabidopsis auxin permease AUX1. Plant Cell (2004) 2.55
Colocalization of fluorescent markers in confocal microscope images of plant cells. Nat Protoc (2008) 2.53
Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science (2009) 2.52
Auxin transport through non-hair cells sustains root-hair development. Nat Cell Biol (2008) 1.94
Root growth in Arabidopsis requires gibberellin/DELLA signalling in the endodermis. Nat Cell Biol (2008) 1.89
Systems analysis of auxin transport in the Arabidopsis root apex. Plant Cell (2014) 1.87
AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development. Plant Cell (2012) 1.86
Bimodular auxin response controls organogenesis in Arabidopsis. Proc Natl Acad Sci U S A (2010) 1.78
Auxin transport: a field in flux. Trends Plant Sci (2006) 1.78
Nitrate transport and signalling. J Exp Bot (2007) 1.77
Lateral root emergence: a difficult birth. J Exp Bot (2009) 1.64
Brassinosteroid perception in the epidermis controls root meristem size. Development (2011) 1.62
Gibberellin signaling in the endodermis controls Arabidopsis root meristem size. Curr Biol (2009) 1.62
RootNav: navigating images of complex root architectures. Plant Physiol (2013) 1.61
Endodermal ABA signaling promotes lateral root quiescence during salt stress in Arabidopsis seedlings. Plant Cell (2013) 1.46
Auxin regulates aquaporin function to facilitate lateral root emergence. Nat Cell Biol (2012) 1.44
Cell polarity signaling in Arabidopsis involves a BFA-sensitive auxin influx pathway. Curr Biol (2002) 1.41
High-throughput feature counting and measurement of roots. Bioinformatics (2011) 1.38
Short-Root regulates primary, lateral, and adventitious root development in Arabidopsis. Plant Physiol (2010) 1.38
Floral organ abscission peptide IDA and its HAE/HSL2 receptors control cell separation during lateral root emergence. Proc Natl Acad Sci U S A (2013) 1.38
Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues. Proc Natl Acad Sci U S A (2013) 1.27
The case for morphogens in plants. Nat Cell Biol (2003) 1.26
Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. BMC Syst Biol (2010) 1.25
Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales. Plant Cell (2012) 1.25
Hormonal regulation of root growth: integrating local activities into global behaviour. Trends Plant Sci (2012) 1.24
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Proc Natl Acad Sci U S A (2012) 1.22
Post-embryonic root organogenesis in cereals: branching out from model plants. Trends Plant Sci (2013) 1.13
Auxin reflux between the endodermis and pericycle promotes lateral root initiation. EMBO J (2012) 1.12
Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling. Proc Natl Acad Sci U S A (2012) 1.12
Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Mol Syst Biol (2013) 1.08
Growth-induced hormone dilution can explain the dynamics of plant root cell elongation. Proc Natl Acad Sci U S A (2012) 1.06
New insight into the biochemical mechanisms regulating auxin transport in plants. Biochem J (2007) 1.04
Comprehensive metabolic profiling of mono- and polyglutamated folates and their precursors in plant and animal tissue using liquid chromatography/negative ion electrospray ionisation tandem mass spectrometry. Rapid Commun Mass Spectrom (2005) 1.04
Recovering the dynamics of root growth and development using novel image acquisition and analysis methods. Philos Trans R Soc Lond B Biol Sci (2012) 1.04
Plant systems biology: network matters. Plant Cell Environ (2011) 1.03
Conserved Arabidopsis ECHIDNA protein mediates trans-Golgi-network trafficking and cell elongation. Proc Natl Acad Sci U S A (2011) 1.03
Auxin carriers localization drives auxin accumulation in plant cells infected by Frankia in Casuarina glauca actinorhizal nodules. Plant Physiol (2010) 1.03
Folate biofortification in food plants. Trends Plant Sci (2007) 1.01
What lies beneath: underlying assumptions in bioimage analysis. Trends Plant Sci (2012) 0.99
SHORT-ROOT and SCARECROW regulate leaf growth in Arabidopsis by stimulating S-phase progression of the cell cycle. Plant Physiol (2010) 0.98
A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes. J Exp Bot (2014) 0.98
Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending. New Phytol (2014) 0.95
Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots. Proc Natl Acad Sci U S A (2013) 0.95
MicroFilament Analyzer, an image analysis tool for quantifying fibrillar orientation, reveals changes in microtubule organization during gravitropism. Plant J (2013) 0.94
Mechanical properties of epidermal cells of whole living roots of Arabidopsis thaliana: an atomic force microscopy study. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.94
Functional analysis of folate polyglutamylation and its essential role in plant metabolism and development. Plant J (2010) 0.94
The binding of auxin to the Arabidopsis auxin influx transporter AUX1. Plant Physiol (2008) 0.92
Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape. Plant Methods (2012) 0.88
From jellyfish to biosensors: the use of fluorescent proteins in plants. Int J Dev Biol (2013) 0.85
Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere. Plant Physiol (2013) 0.85
Modelling root growth and development. SEB Exp Biol Ser (2008) 0.84
Biosensors for phytohormone quantification: challenges, solutions, and opportunities. Trends Plant Sci (2013) 0.84
AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis. New Phytol (2014) 0.84
The roots of future rice harvests. Rice (N Y) (2014) 0.82
A central role for gamma-glutamyl hydrolases in plant folate homeostasis. Plant J (2010) 0.82
Plant development: size matters, and it's all down to hormones. Curr Biol (2010) 0.81
Feeling UPBEAT about growth: linking ROS gradients and cell proliferation. Dev Cell (2010) 0.80
Authentication of coffee by means of PCR-RFLP analysis and lab-on-a-chip capillary electrophoresis. J Agric Food Chem (2006) 0.78
Root development: cytokinin transport matters, too! Curr Biol (2011) 0.78
Finite element modelling of cell wall properties for onion epidermis using a fibre-reinforced hyperelastic model. J Struct Biol (2010) 0.77
Time-profiling fluorescent reporters in the Arabidopsis root. Methods Mol Biol (2014) 0.77
Mapping the site of action of the Green Revolution hormone gibberellin. Proc Natl Acad Sci U S A (2013) 0.77
Systems biology approaches to understand the role of auxin in root growth and development. Physiol Plant (2014) 0.77
Toward the authentication of wines of Nemea denomination of origin through cleaved amplified polymorphic sequence (CAPS)-based assay. J Agric Food Chem (2008) 0.75