Published in PLoS Genet on November 15, 2012
ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters. Nat Commun (2015) 1.01
RNA polymerase III accurately initiates transcription from RNA polymerase II promoters in vitro. J Biol Chem (2014) 0.93
Cajal bodies are linked to genome conformation. Nat Commun (2016) 0.89
Modulation of gene expression via overlapping binding sites exerted by ZNF143, Notch1 and THAP11. Nucleic Acids Res (2013) 0.89
Gene duplication and neofunctionalization: POLR3G and POLR3GL. Genome Res (2013) 0.87
The little elongation complex functions at initiation and elongation phases of snRNA gene transcription. Mol Cell (2013) 0.86
Differential phosphorylation of a regulatory subunit of protein kinase CK2 by target of rapamycin complex 1 signaling and the Cdc-like kinase Kns1. J Biol Chem (2015) 0.84
Allele-specific loss and transcription of the miR-15a/16-1 cluster in chronic lymphocytic leukemia. Leukemia (2014) 0.83
Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell (2015) 0.83
The selenocysteine tRNA gene in leishmania major is transcribed by both RNA polymerase II and RNA polymerase III. Eukaryot Cell (2014) 0.79
The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance. Dev Cell (2014) 0.78
MAF1 represses CDKN1A through a Pol III-dependent mechanism. Elife (2015) 0.78
Identification and characterization of buffalo 7SK and U6 pol III promoters and application for expression of short hairpin RNAs. Int J Mol Sci (2014) 0.78
RNA Polymerase III Advances: Structural and tRNA Functional Views. Trends Biochem Sci (2016) 0.77
A partial loss-of-function mutation in an Arabidopsis RNA polymerase III subunit leads to pleiotropic defects. J Exp Bot (2016) 0.77
Human RNase P ribonucleoprotein is required for formation of initiation complexes of RNA polymerase III. Nucleic Acids Res (2015) 0.76
RNA polymerase III initiation on coligo DNA templates containing loops of variable sequence, size and nucleotide chemistry. Gene (2016) 0.75
The Myb domain of the largest subunit of SNAPc adopts different architectural configurations on U1 and U6 snRNA gene promoter sequences. Nucleic Acids Res (2014) 0.75
Specific genomic cues regulate Cajal body assembly. RNA Biol (2016) 0.75
Relevance of HCN2-expressing human mesenchymal stem cells for the generation of biological pacemakers. Stem Cell Res Ther (2016) 0.75
Topological organization and dynamic regulation of human tRNA genes during macrophage differentiation. Genome Biol (2017) 0.75
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature (2001) 57.23
MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res (2009) 23.27
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods (2008) 11.61
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res (2008) 8.89
Ethidium bromide provides a simple tool for identifying genuine DNA-independent protein associations. Proc Natl Acad Sci U S A (1992) 6.23
Ending the message: poly(A) signals then and now. Genes Dev (2011) 3.47
A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter. Cell (1989) 3.28
The POU domain: versatility in transcriptional regulation by a flexible two-in-one DNA-binding domain. Genes Dev (1995) 2.97
Stem-loop binding protein, the protein that binds the 3' end of histone mRNA, is cell cycle regulated by both translational and posttranslational mechanisms. Mol Cell Biol (2000) 2.90
Formation of the 3' end of U1 snRNA is directed by a conserved sequence located downstream of the coding region. EMBO J (1985) 2.69
Sequences required for 3' end formation of human U2 small nuclear RNA. Cell (1985) 2.57
Small nuclear RNA genes: a model system to study fundamental mechanisms of transcription. J Biol Chem (2001) 2.57
Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors. Nat Struct Mol Biol (2010) 2.30
Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells. Nat Struct Mol Biol (2010) 2.15
GA-binding protein transcription factor: a review of GABP as an integrator of intracellular signaling and protein-protein interactions. Blood Cells Mol Dis (2004) 1.95
Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes. Nat Struct Mol Biol (2010) 1.93
TBP dynamics in living human cells: constitutive association of TBP with mitotic chromosomes. Mol Biol Cell (2002) 1.78
Identification of novel functional TBP-binding sites and general factor repertoires. EMBO J (2007) 1.77
Different human TFIIIB activities direct RNA polymerase III transcription from TATA-containing and TATA-less promoters. Genes Dev (2000) 1.61
Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells. Genome Res (2010) 1.57
Multiple cis-acting elements are required for RNA polymerase III transcription of the gene encoding H1 RNA, the RNA component of human RNase P. J Biol Chem (1991) 1.52
The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action. Nat Cell Biol (2008) 1.50
Activation of p53 or loss of the Cockayne syndrome group B repair protein causes metaphase fragility of human U1, U2, and 5S genes. Mol Cell (2000) 1.46
Cell cycle regulation of RNA polymerase III transcription. Mol Cell Biol (1995) 1.44
Expression of human snRNA genes from beginning to end. Biochem Soc Trans (2008) 1.39
TFIIIB is phosphorylated, disrupted and selectively released from tRNA promoters during mitosis in vivo. EMBO J (2003) 1.36
Transcription boundaries of U1 small nuclear RNA. Mol Cell Biol (1985) 1.36
The integrator complex recognizes a new double mark on the RNA polymerase II carboxyl-terminal domain. J Biol Chem (2010) 1.33
Transcription of the human U2 snRNA genes continues beyond the 3' box in vivo. EMBO J (1999) 1.32
SNAP19 mediates the assembly of a functional core promoter complex (SNAPc) shared by RNA polymerases II and III. Genes Dev (1998) 1.31
De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis. Nucleic Acids Res (2010) 1.30
Zfp143 regulates Nanog through modulation of Oct4 binding. Stem Cells (2008) 1.27
A stable complex of a novel transcription factor IIB- related factor, human TFIIIB50, and associated proteins mediate selective transcription by RNA polymerase III of genes with upstream promoter elements. Proc Natl Acad Sci U S A (2000) 1.26
The Oct-1 POU-specific domain can stimulate small nuclear RNA gene transcription by stabilizing the basal transcription complex SNAPc. Mol Cell Biol (1996) 1.26
Transcriptional regulation of human small nuclear RNA genes. Biochim Biophys Acta (2008) 1.25
Ser7 phosphorylation of the CTD recruits the RPAP2 Ser5 phosphatase to snRNA genes. Mol Cell (2011) 1.20
CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription. Mol Cell Biol (2007) 1.20
SNAP(c): a core promoter factor with a built-in DNA-binding damper that is deactivated by the Oct-1 POU domain. Genes Dev (1999) 1.19
The general transcription factors IIA, IIB, IIF, and IIE are required for RNA polymerase II transcription from the human U1 small nuclear RNA promoter. Mol Cell Biol (1999) 1.18
Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. Nucleic Acids Res (2003) 1.18
A genome scale location analysis of human Staf/ZNF143-binding sites suggests a widespread role for human Staf/ZNF143 in mammalian promoters. J Biol Chem (2006) 1.17
CK2 phosphorylation of Bdp1 executes cell cycle-specific RNA polymerase III transcription repression. Mol Cell (2004) 1.17
Widespread occurrence of non-canonical transcription termination by human RNA polymerase III. Nucleic Acids Res (2011) 1.13
The Oct-1 POU domain activates snRNA gene transcription by contacting a region in the SNAPc largest subunit that bears sequence similarities to the Oct-1 coactivator OBF-1. Genes Dev (1998) 1.11
The little elongation complex regulates small nuclear RNA transcription. Mol Cell (2011) 1.06
A map of protein-protein contacts within the small nuclear RNA-activating protein complex SNAPc. J Biol Chem (2000) 1.06
HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy. Genome Res (2013) 1.01
A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver. Genome Res (2012) 1.00
Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription. Nucleic Acids Res (2010) 0.97
Identification of SNAPc subunit domains that interact with specific nucleotide positions in the U1 and U6 gene promoters. Mol Cell Biol (2010) 0.93
Regulation of snRNA gene expression by the Drosophila melanogaster small nuclear RNA activating protein complex (DmSNAPc). Crit Rev Biochem Mol Biol (2010) 0.93
Maximization of selenocysteine tRNA and U6 small nuclear RNA transcriptional activation achieved by flexible utilization of a Staf zinc finger. J Biol Chem (1999) 0.93
The largest subunit of human RNA polymerase III is closely related to the largest subunit of yeast and trypanosome RNA polymerase III. Genome Res (1997) 0.92
Metaphase fragility of the human RNU1 and RNU2 loci is induced by actinomycin D through a p53-dependent pathway. Hum Mol Genet (1998) 0.88
Subunit stoichiometry of the Drosophila melanogaster small nuclear RNA activating protein complex (SNAPc). FEBS Lett (2008) 0.83
Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst (2006) 14.60
Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics (2005) 10.64
Recruitment of RNA polymerase III to its target promoters. Genes Dev (2002) 4.36
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Science (2013) 2.66
EPD in its twentieth year: towards complete promoter coverage of selected model organisms. Nucleic Acids Res (2006) 2.49
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. Nucleic Acids Res (2004) 2.47
Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. PLoS Biol (2012) 2.12
A role for beta-actin in RNA polymerase III transcription. Genes Dev (2004) 1.82
Identification of novel functional TBP-binding sites and general factor repertoires. EMBO J (2007) 1.77
Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells. Genome Res (2010) 1.57
Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. Mol Cell Biol (2002) 1.55
Maf1, a new player in the regulation of human RNA polymerase III transcription. PLoS One (2006) 1.54
mTORC1 directly phosphorylates and regulates human MAF1. Mol Cell Biol (2010) 1.24
A minimal RNA polymerase III transcription system from human cells reveals positive and negative regulatory roles for CK2. Mol Cell (2003) 1.22
CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription. Mol Cell Biol (2007) 1.20
CK2 phosphorylation of Bdp1 executes cell cycle-specific RNA polymerase III transcription repression. Mol Cell (2004) 1.17
FBI-1 can stimulate HIV-1 Tat activity and is targeted to a novel subnuclear domain that includes the Tat-P-TEFb-containing nuclear speckles. Mol Biol Cell (2002) 1.14
Widespread occurrence of non-canonical transcription termination by human RNA polymerase III. Nucleic Acids Res (2011) 1.13
Signal search analysis server. Nucleic Acids Res (2003) 1.11
On a roll for new TRF targets. Genes Dev (2007) 1.11
Redundant cooperative interactions for assembly of a human U6 transcription initiation complex. Mol Cell Biol (2002) 1.04
Can survival prediction be improved by merging gene expression data sets? PLoS One (2009) 1.04
Flexible DNA binding of the BTB/POZ-domain protein FBI-1. J Biol Chem (2003) 1.03
HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy. Genome Res (2013) 1.01
A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver. Genome Res (2012) 1.00
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data. BMC Bioinformatics (2007) 0.96
A shared surface of TBP directs RNA polymerase II and III transcription via association with different TFIIB family members. Mol Cell (2003) 0.92
Structure-function analysis of the human TFIIB-related factor II protein reveals an essential role for the C-terminal domain in RNA polymerase III transcription. Mol Cell Biol (2005) 0.91
Structural abnormalities in the thalamus of migraineurs with aura: a multiparametric study at 3 T. Hum Brain Mapp (2013) 0.89
Gene duplication and neofunctionalization: POLR3G and POLR3GL. Genome Res (2013) 0.87
Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes. BMC Genomics (2005) 0.85
Artificial zinc finger fusions targeting Sp1-binding sites and the trans-activator-responsive element potently repress transcription and replication of HIV-1. J Biol Chem (2005) 0.85
Actin's latest act: polymerizing to facilitate transcription? Nat Cell Biol (2006) 0.83
Does Pol I talk to Pol II? Coordination of RNA polymerases in ribosome biogenesis. Genes Dev (2006) 0.80
Mitotic functions for SNAP45, a subunit of the small nuclear RNA-activating protein complex SNAPc. J Biol Chem (2008) 0.79
A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes. Gene (2006) 0.78
Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data. Bioinformatics (2013) 0.77
Eeny meeny miny moe, catch a transcript by the toe, or how to enumerate eukaryotic transcripts. Genes Dev (2012) 0.75