PubRank

Pierre Rouzé

Author PubWeight™ 95.42‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet 2010 8.07
2 PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 2002 6.43
3 Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 2004 4.95
4 Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A 2006 4.52
5 Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 2009 4.05
6 A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. J Comput Biol 2002 4.05
7 Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci U S A 2004 3.97
8 Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell 2002 3.91
9 The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 2010 3.60
10 The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A 2007 3.58
11 The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature 2011 3.29
12 Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res 2002 3.12
13 Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res 2004 3.02
14 Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A 2011 2.84
15 Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol 2009 2.67
16 CATMA: a complete Arabidopsis GST database. Nucleic Acids Res 2003 2.34
17 ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. Bioinformatics 2008 1.91
18 Generic eukaryotic core promoter prediction using structural features of DNA. Genome Res 2007 1.80
19 EST data suggest that poplar is an ancient polyploid. New Phytol 2005 1.70
20 Computational approaches to identify promoters and cis-regulatory elements in plant genomes. Plant Physiol 2003 1.50
21 SpliceMachine: predicting splice sites from high-dimensional local context representations. Bioinformatics 2004 1.47
22 Large-scale structural analysis of the core promoter in mammalian and plant genomes. Nucleic Acids Res 2005 1.39
23 Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress. Genome Biol 2009 1.36
24 How many genes are there in plants (... and why are they there)? Curr Opin Plant Biol 2007 1.35
25 Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. BMC Genomics 2009 1.34
26 Automatic design of gene-specific sequence tags for genome-wide functional studies. Bioinformatics 2003 1.33
27 The small RNA world of plants. New Phytol 2006 1.25
28 ORCAE: online resource for community annotation of eukaryotes. Nat Methods 2012 1.25
29 A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust). Mol Plant Microbe Interact 2012 1.18
30 Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J Mol Evol 2003 1.18
31 Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. New Phytol 2012 1.17
32 Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. Genome Biol 2012 1.10
33 The FTO gene, implicated in human obesity, is found only in vertebrates and marine algae. J Mol Evol 2007 1.07
34 AFLPinSilico, simulating AFLP fingerprints. Bioinformatics 2003 1.06
35 Feature subset selection for splice site prediction. Bioinformatics 2002 1.04
36 GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Res 2005 1.01
37 In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists. Bioinformatics 2007 1.00
38 Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine. BMC Genomics 2011 0.97
39 Feature selection for splice site prediction: a new method using EDA-based feature ranking. BMC Bioinformatics 2004 0.96
40 Open access to sequence: browsing the Pichia pastoris genome. Microb Cell Fact 2009 0.95
41 Higher intron loss rate in Arabidopsis thaliana than A. lyrata is consistent with stronger selection for a smaller genome. Mol Biol Evol 2011 0.92
42 Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction. Bioinformatics 2003 0.91
43 Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne. Plant Biotechnol J 2013 0.84
44 The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution. Genome Biol Evol 2013 0.81
45 Unique regulation of the Calvin cycle in the ultrasmall green alga Ostreococcus. J Mol Evol 2007 0.81