Published in BMC Genomics on August 20, 2015
Transcription and imprinting dynamics in developing postnatal male germline stem cells. Genes Dev (2015) 0.80
Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res (2016) 0.78
Epigenetic Remodeling in Male Germline Development. Stem Cells Int (2016) 0.75
Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta. Nucleic Acids Res (2017) 0.75
Dental Pulp Stem Cells Model Early Life and Imprinted DNA Methylation Patterns. Stem Cells (2016) 0.75
Genome-Scale Assessment of Age-Related DNA Methylation Changes in Mouse Spermatozoa. PLoS One (2016) 0.75
Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing. BMC Genomics (2017) 0.75
Characterization of How DNA Modifications Affect DNA Binding by C2H2 Zinc Finger Proteins. Methods Enzymol (2016) 0.75
Whole-genome sequencing of spermatocytic tumors provides insights into the mutational processes operating in the male germline. PLoS One (2017) 0.75
Switching of dominant retrotransposon silencing strategies from posttranscriptional to transcriptional mechanisms during male germ-cell development in mice. PLoS Genet (2017) 0.75
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc (2009) 137.99
TopHat: discovering splice junctions with RNA-Seq. Bioinformatics (2009) 81.13
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc (2012) 35.75
Human DNA methylomes at base resolution show widespread epigenomic differences. Nature (2009) 34.27
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet (2007) 32.41
Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature (2009) 24.41
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell (2010) 23.97
Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res (2005) 23.41
GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol (2010) 16.72
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature (2011) 13.94
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics (2011) 9.79
NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One (2012) 9.30
The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res (2012) 9.02
DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature (2011) 8.75
A map of the cis-regulatory sequences in the mouse genome. Nature (2012) 8.74
Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature (2004) 7.57
Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting. Nature (2004) 7.42
Spermatogenesis following male germ-cell transplantation. Proc Natl Acad Sci U S A (1994) 7.11
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell (2012) 7.09
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Mol Cell (2010) 6.71
Plzf is required in adult male germ cells for stem cell self-renewal. Nat Genet (2004) 5.75
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains. Nat Genet (2011) 5.70
Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nat Rev Genet (2008) 5.67
Essential role of Plzf in maintenance of spermatogonial stem cells. Nat Genet (2004) 5.55
Regulation of cell fate decision of undifferentiated spermatogonia by GDNF. Science (2000) 5.44
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science (2012) 5.17
In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication. Nat Genet (2006) 5.14
Germline transmission of donor haplotype following spermatogonial transplantation. Proc Natl Acad Sci U S A (1994) 4.97
The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells. Mol Cell (2012) 4.32
Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat Rev Genet (2011) 4.25
Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell (2012) 4.00
Dynamic CpG island methylation landscape in oocytes and preimplantation embryos. Nat Genet (2011) 3.99
Retinoic acid regulates sex-specific timing of meiotic initiation in mice. Proc Natl Acad Sci U S A (2006) 3.94
Orphan CpG islands identify numerous conserved promoters in the mammalian genome. PLoS Genet (2010) 3.38
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Res (2011) 3.36
Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum Mol Genet (2007) 3.27
The sox family of transcription factors: versatile regulators of stem and progenitor cell fate. Cell Stem Cell (2013) 2.97
Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet (2012) 2.89
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells. Cell (2013) 2.64
Germline stem cell transplantation and transgenesis. Science (2002) 2.38
Role of c-kit in mouse spermatogenesis: identification of spermatogonia as a specific site of c-kit expression and function. Development (1991) 2.35
Spermatogonial stem cell enrichment by multiparameter selection of mouse testis cells. Proc Natl Acad Sci U S A (2000) 2.30
Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes. Development (2011) 2.28
Identification and characterization of stem cells in prepubertal spermatogenesis in mice. Dev Biol (2003) 2.24
Differential expression of c-kit in mouse undifferentiated and differentiating type A spermatogonia. Endocrinology (1999) 2.18
Neurogenin3 delineates the earliest stages of spermatogenesis in the mouse testis. Dev Biol (2004) 2.13
The first round of mouse spermatogenesis is a distinctive program that lacks the self-renewing spermatogonia stage. Development (2006) 2.07
Ski and SnoN, potent negative regulators of TGF-beta signaling. Cell Res (2009) 2.07
Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence. Genome Res (2012) 2.04
Identifying the stem cell of the intestinal crypt: strategies and pitfalls. Cell Stem Cell (2012) 1.88
The human placenta methylome. Proc Natl Acad Sci U S A (2013) 1.86
Spermatogonial stem cell regulation and spermatogenesis. Philos Trans R Soc Lond B Biol Sci (2010) 1.76
High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice. Genome Res (2013) 1.75
Spermatogonial stem cells. Curr Opin Cell Biol (1998) 1.73
The RNA-binding protein NANOS2 is required to maintain murine spermatogonial stem cells. Science (2009) 1.65
Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging. Nucleic Acids Res (2012) 1.61
Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases. PLoS Genet (2013) 1.57
A unique configuration of genome-wide DNA methylation patterns in the testis. Proc Natl Acad Sci U S A (2006) 1.46
The novel SPARC family member SMOC-2 potentiates angiogenic growth factor activity. J Biol Chem (2006) 1.45
Expression and regulation of transcription factors GATA-4 and GATA-6 in developing mouse testis. Endocrinology (1999) 1.42
Changes in Leydig cell gene expression during development in the mouse. Biol Reprod (2002) 1.42
Sox3 expression in undifferentiated spermatogonia is required for the progression of spermatogenesis. Dev Biol (2005) 1.34
Characterization of spermatogonial stem cell maturation and differentiation in neonatal mice. Biol Reprod (2003) 1.32
Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming. Cell Res (2013) 1.30
Chromatin and transcription transitions of mammalian adult germline stem cells and spermatogenesis. Cell Stem Cell (2014) 1.30
Identification of active regulatory regions from DNA methylation data. Nucleic Acids Res (2013) 1.26
Spermatogonial stem cell self-renewal and development. Annu Rev Cell Dev Biol (2013) 1.25
Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis. Nat Commun (2013) 1.18
Accumulation and loss of asymmetric non-CpG methylation during male germ-cell development. Nucleic Acids Res (2012) 1.05
Alterations of DNA methylation patterns in germ cells and Sertoli cells from developing mouse testis. Cytogenet Cell Genet (1999) 1.05
Spatial analysis of germ stem cell development in Oct-4/EGFP transgenic mice. Arch Histol Cytol (2004) 1.03
A dual role for SOX10 in the maintenance of the postnatal melanocyte lineage and the differentiation of melanocyte stem cell progenitors. PLoS Genet (2013) 0.99
An epigenetic switch is crucial for spermatogonia to exit the undifferentiated state toward a Kit-positive identity. Development (2013) 0.87
The role of SOX10 during enteric nervous system development. Dev Biol (2013) 0.87
DNMT3L promotes quiescence in postnatal spermatogonial progenitor cells. Development (2014) 0.84
Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome. DNA Res (2013) 0.83
Sequence-specific microscopic visualization of DNA methylation status at satellite repeats in individual cell nuclei and chromosomes. Nucleic Acids Res (2013) 0.82
Structure and evolution of the filaggrin gene repeated region in primates. BMC Evol Biol (2017) 0.75
A novel missense variant (Gln220Arg) of GNB4 encoding guanine nucleotide-binding protein, subunit beta-4 in a Japanese family with autosomal dominant motor and sensory neuropathy. Eur J Med Genet (2017) 0.75