Identification, isolation, and characterization of the structural gene encoding the delta' subunit of Escherichia coli DNA polymerase III holoenzyme.

PubWeight™: 0.84‹?›

🔗 View Article (PMC 204798)

Published in J Bacteriol on June 01, 1993

Authors

J R Carter1, M A Franden, R Aebersold, C S McHenry

Author Affiliations

1: University of Colorado Health Sciences Center, Department of Biochemistry, Biophysics and Genetics, Denver, Colorado 80262.

Articles cited by this

Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (1970) 1528.65

DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A (1977) 790.54

Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol (1975) 503.08

Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci U S A (1979) 365.71

A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res (1979) 214.95

Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A (1988) 193.60

A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol (1969) 71.21

The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci U S A (1974) 62.91

The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell (1987) 46.35

Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J Mol Biol (1980) 41.18

Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J (1982) 38.14

A gas-liquid solid phase peptide and protein sequenator. J Biol Chem (1981) 15.73

Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector. Gene (1986) 13.92

Characterization of translational initiation sites in E. coli. Nucleic Acids Res (1982) 11.91

Identification of a sex-factor-affinity site in E. coli as gamma delta. Cold Spring Harb Symp Quant Biol (1981) 8.26

Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose. Proc Natl Acad Sci U S A (1987) 7.53

Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli. Proc Natl Acad Sci U S A (1983) 5.79

Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell (1992) 5.77

DNA polymerase III holoenzyme of Escherichia coli. Purification and resolution into subunits. J Biol Chem (1977) 4.41

Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map. Nucleic Acids Res (1990) 4.07

Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme. J Biol Chem (1991) 3.37

Phosphate-binding sequences in nucleotide-binding proteins. FEBS Lett (1985) 3.06

Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme. Proc Natl Acad Sci U S A (1990) 2.78

The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting. Proc Natl Acad Sci U S A (1990) 2.71

Identification of the epsilon-subunit of Escherichia coli DNA polymerase III holoenzyme as the dnaQ gene product: a fidelity subunit for DNA replication. Proc Natl Acad Sci U S A (1983) 2.62

Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame. Nucleic Acids Res (1990) 2.61

DNA polymerase III of Escherichia coli. Purification and identification of subunits. J Biol Chem (1979) 2.55

Recognition of messenger RNA during translational initiation in Escherichia coli. Biochimie (1984) 2.31

Structure and expression of the dnaQ mutator and the RNase H genes of Escherichia coli: overlap of the promoter regions. Proc Natl Acad Sci U S A (1983) 2.16

Structural analysis of the dnaA and dnaN genes of Escherichia coli. Gene (1984) 2.11

Mechanism of DNA elongation catalyzed by Escherichia coli DNA polymerase III, dnaZ protein, and DNA elongation factors I and III. Proc Natl Acad Sci U S A (1976) 2.04

DNA polymerase 3 star requires ATP to start synthesis on a primed DNA. Proc Natl Acad Sci U S A (1973) 1.85

The elucidation of protein function by sequence motif analysis. Comput Appl Biosci (1989) 1.84

The dnaN gene codes for the beta subunit of DNA polymerase III holoenzyme of escherichia coli. Proc Natl Acad Sci U S A (1981) 1.77

Sequence analysis of the Escherichia coli dnaE gene. J Bacteriol (1987) 1.71

Accessory proteins bind a primed template and mediate rapid cycling of DNA polymerase III holoenzyme from Escherichia coli. J Biol Chem (1987) 1.68

Cloning and identification of the product of the dnaE gene of Escherichia coli. J Bacteriol (1982) 1.68

Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. I. Multiple effectors act to modulate Okazaki fragment size. J Biol Chem (1992) 1.64

Purification and characterization of DNA polymerase III'. Identification of tau as a subunit of the DNA polymerase III holoenzyme. J Biol Chem (1982) 1.62

Total reconstitution of DNA polymerase III holoenzyme reveals dual accessory protein clamps. J Biol Chem (1990) 1.59

Sequence and expression in Escherichia coli of the 40-kDa subunit of activator 1 (replication factor C) of HeLa cells. Proc Natl Acad Sci U S A (1992) 1.53

Analysis of the ATPase subassembly which initiates processive DNA synthesis by DNA polymerase III holoenzyme. J Biol Chem (1991) 1.52

Cloning of the Escherichia coli dnaZX region and identification of its products. Mol Gen Genet (1983) 1.49

Constitution of the twin polymerase of DNA polymerase III holoenzyme. J Biol Chem (1991) 1.45

The dnaX gene encodes the DNA polymerase III holoenzyme tau subunit, precursor of the gamma subunit, the dnaZ gene product. Mol Gen Genet (1983) 1.43

Structural and enzymatic studies of the T4 DNA replication system. I. Physical characterization of the polymerase accessory protein complex. J Biol Chem (1989) 1.40

DNA polymerase III holoenzyme. Components, structure, and mechanism of a true replicative complex. J Biol Chem (1991) 1.36

ATP interactions of the tau and gamma subunits of DNA polymerase III holoenzyme of Escherichia coli. J Biol Chem (1989) 1.32

The 44P subunit of the T4 DNA polymerase accessory protein complex catalyzes ATP hydrolysis. J Biol Chem (1989) 1.31

Construction and analysis of deletions in the structural gene (uvrD) for DNA helicase II of Escherichia coli. J Bacteriol (1991) 1.27

The interaction of DNA polymerase III and the product of the Escherichia coli mutator gene, mutD. J Biol Chem (1984) 1.26

Relation of the Escherichia coli dnaX gene to its two products--the tau and gamma subunits of DNA polymerase III holoenzyme. Nucleic Acids Res (1987) 1.25

The beta subunit of the DNA polymerase III holoenzyme becomes inaccessible to antibody after formation of an initiation complex with primed DNA. J Biol Chem (1982) 1.24

The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame. Nucleic Acids Res (1986) 1.24

DNA polymerase III holoenzyme of Escherichia coli. II. A novel complex including the gamma subunit essential for processive synthesis. J Biol Chem (1988) 1.21

Bacteriophage T4 gene 44 DNA polymerase accessory protein. Sequences of gene 44 and its protein product. J Biol Chem (1984) 1.21

Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. III. A polymerase-primase interaction governs primer size. J Biol Chem (1992) 1.06

Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. IV. Reconstitution of an asymmetric, dimeric DNA polymerase III holoenzyme. J Biol Chem (1992) 0.99

Excess beta subunit can bypass the ATP requirement for highly processive synthesis by the Escherichia coli DNA polymerase III holoenzyme. J Biol Chem (1983) 0.89

Molecular cloning, sequencing, and overexpression of the structural gene encoding the delta subunit of Escherichia coli DNA polymerase III holoenzyme. J Bacteriol (1992) 0.82

A dnaZX-like open reading frame downstream from the Bacillus subtilis scRNA gene. Nucleic Acids Res (1988) 0.80

Articles by these authors

(truncated to the top 100)

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol (1999) 21.92

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science (2001) 17.11

Correlation between protein and mRNA abundance in yeast. Mol Cell Biol (1999) 16.95

Molecular characterization of mitochondrial apoptosis-inducing factor. Nature (1999) 14.41

A cellular gene encodes scrapie PrP 27-30 protein. Cell (1985) 8.86

Regulation of 4E-BP1 phosphorylation: a novel two-step mechanism. Genes Dev (1999) 8.14

A systematic approach to the analysis of protein phosphorylation. Nat Biotechnol (2001) 6.66

Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat Biotechnol (2001) 5.69

Proteins of transcription factor ISGF-3: one gene encodes the 91-and 84-kDa ISGF-3 proteins that are activated by interferon alpha. Proc Natl Acad Sci U S A (1992) 5.50

Hierarchical phosphorylation of the translation inhibitor 4E-BP1. Genes Dev (2001) 5.37

Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc Natl Acad Sci U S A (2000) 4.79

Nicastrin modulates presenilin-mediated notch/glp-1 signal transduction and betaAPP processing. Nature (2000) 4.68

Subunit of an alpha-interferon-responsive transcription factor is related to interferon regulatory factor and Myb families of DNA-binding proteins. Mol Cell Biol (1992) 3.90

The proteins of ISGF-3, the interferon alpha-induced transcriptional activator, define a gene family involved in signal transduction. Proc Natl Acad Sci U S A (1992) 3.74

Smooth muscle cell phenotypic transition associated with calcification: upregulation of Cbfa1 and downregulation of smooth muscle lineage markers. Circ Res (2001) 3.50

Identification of RFC(Ctf18p, Ctf8p, Dcc1p): an alternative RFC complex required for sister chromatid cohesion in S. cerevisiae. Mol Cell (2001) 3.40

Coupling of a replicative polymerase and helicase: a tau-DnaB interaction mediates rapid replication fork movement. Cell (1996) 2.96

A brain-specific activator of cyclin-dependent kinase 5. Nature (1994) 2.71

The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting. Proc Natl Acad Sci U S A (1990) 2.71

DNA polymerase III of Escherichia coli. Purification and identification of subunits. J Biol Chem (1979) 2.55

Mechanism of interaction of thymidylate synthetase with 5-fluorodeoxyuridylate. Biochemistry (1974) 2.42

Serum-stimulated, rapamycin-sensitive phosphorylation sites in the eukaryotic translation initiation factor 4GI. EMBO J (2000) 2.40

Tyrosine phosphorylation and activation of homologous protein kinases during oocyte maturation and mitogenic activation of fibroblasts. Mol Cell Biol (1991) 2.36

Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex. Mol Cell Biol (2001) 2.28

Purification of three cytotoxic lymphocyte granule serine proteases that induce apoptosis through distinct substrate and target cell interactions. J Exp Med (1992) 2.25

The cholinergic neuronal differentiation factor from heart cells is identical to leukemia inhibitory factor. Science (1989) 2.23

High throughput protein characterization by automated reverse-phase chromatography/electrospray tandem mass spectrometry. Protein Sci (1998) 2.23

Chemical synthesis, purification, and characterization of two inflammatory proteins, neutrophil activating peptide 1 (interleukin-8) and neutrophil activating peptide. Biochemistry (1991) 2.20

Protein identification by solid phase microextraction-capillary zone electrophoresis-microelectrospray-tandem mass spectrometry. Nat Biotechnol (1996) 2.19

Mass spectrometric approaches for the identification of gel-separated proteins. Electrophoresis (1995) 2.13

Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription. J Biol Chem (1994) 2.07

A natural killer cell granule protein that induces DNA fragmentation and apoptosis. J Exp Med (1992) 2.01

Four related proteins of the Trypanosoma brucei RNA editing complex. Mol Cell Biol (2001) 1.97

Cloning and characterization of a novel insulin-regulated membrane aminopeptidase from Glut4 vesicles. J Biol Chem (1995) 1.95

Characterization and kinetic analysis of the intracellular domain of human protein tyrosine phosphatase beta (HPTP beta) using synthetic phosphopeptides. Biochem J (1994) 1.94

Independent evolution of the prochlorophyte and green plant chlorophyll a/b light-harvesting proteins. Proc Natl Acad Sci U S A (1996) 1.93

Identification of flow-dependent endothelial nitric-oxide synthase phosphorylation sites by mass spectrometry and regulation of phosphorylation and nitric oxide production by the phosphatidylinositol 3-kinase inhibitor LY294002. J Biol Chem (1999) 1.87

A gene encoding a novel RFX-associated transactivator is mutated in the majority of MHC class II deficiency patients. Nat Genet (1998) 1.84

Automated chemical synthesis of a protein growth factor for hemopoietic cells, interleukin-3. Science (1986) 1.84

The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data. Bioinformatics (2008) 1.81

The chi psi subunits of DNA polymerase III holoenzyme bind to single-stranded DNA-binding protein (SSB) and facilitate replication of an SSB-coated template. J Biol Chem (1998) 1.80

Identification by electrospray ionization mass spectrometry of the sites of tyrosine phosphorylation induced in activated Jurkat T cells on the protein tyrosine kinase ZAP-70. J Biol Chem (1994) 1.77

p90(RSK) is a serum-stimulated Na+/H+ exchanger isoform-1 kinase. Regulatory phosphorylation of serine 703 of Na+/H+ exchanger isoform-1. J Biol Chem (1999) 1.72

Sequence analysis of the Escherichia coli dnaE gene. J Bacteriol (1987) 1.71

Purification and identification of secreted oxidative stress-induced factors from vascular smooth muscle cells. J Biol Chem (2000) 1.68

Cloning and identification of the product of the dnaE gene of Escherichia coli. J Bacteriol (1982) 1.68

Glu-537, not Glu-461, is the nucleophile in the active site of (lac Z) beta-galactosidase from Escherichia coli. J Biol Chem (1992) 1.68

A G protein gamma subunit shares homology with ras proteins. Science (1989) 1.66

Ser(2194) is a highly conserved major phosphorylation site of the hepatitis C virus nonstructural protein NS5A. Virology (2000) 1.65

Site-specific pausing of deoxyribonucleic acid synthesis catalyzed by four forms of Escherichia coli DNA polymerase III. Biochemistry (1983) 1.63

Purification and characterization of DNA polymerase III'. Identification of tau as a subunit of the DNA polymerase III holoenzyme. J Biol Chem (1982) 1.62

tau couples the leading- and lagging-strand polymerases at the Escherichia coli DNA replication fork. J Biol Chem (1996) 1.61

Activating and inhibitory mutations in adjacent tyrosines in the kinase domain of ZAP-70. J Biol Chem (1995) 1.60

5-Fluoro-2'-deoxyuridylate: covalent complex with thymidylate synthetase. Proc Natl Acad Sci U S A (1972) 1.54

Mass spectrometric characterization of proteins extracted from Jurkat T cell detergent-resistant membrane domains. Proteomics (2001) 1.52

Size classes of products synthesized processively by DNA polymerase III and DNA polymerase III holoenzyme of Escherichia coli. J Biol Chem (1981) 1.52

HIV nucleocapsid protein. Expression in Escherichia coli, purification, and characterization. J Biol Chem (1993) 1.52

Phosphorylation of eIF-4E on serine 209 by protein kinase C is inhibited by the translational repressors, 4E-binding proteins. J Biol Chem (1996) 1.51

An essential 45 kDa yeast transmembrane protein reacts with anti-nuclear pore antibodies: purification of the protein, immunolocalization and cloning of the gene. Eur J Cell Biol (1991) 1.50

A novel assembly mechanism for the DNA polymerase III holoenzyme DnaX complex: association of deltadelta' with DnaX(4) forms DnaX(3)deltadelta'. EMBO J (2000) 1.48

Analysis of membrane proteins by two-dimensional electrophoresis: comparison of the proteins extracted from normal or Plasmodium falciparum-infected erythrocyte ghosts. Electrophoresis (1999) 1.47

Protein analysis by mass spectrometry and sequence database searching: tools for cancer research in the post-genomic era. Electrophoresis (1999) 1.47

Tyrosyl phosphorylation and activation of MAP kinases by p56lck. Science (1992) 1.47

Role of tyrosine phosphorylation in the regulation of the interaction of heterogenous nuclear ribonucleoprotein K protein with its protein and RNA partners. J Biol Chem (2000) 1.44

Yeast nuclear extract contains two major forms of RNA polymerase II mediator complexes. J Biol Chem (2001) 1.42

ZAP-70 binding specificity to T cell receptor tyrosine-based activation motifs: the tandem SH2 domains of ZAP-70 bind distinct tyrosine-based activation motifs with varying affinity. J Exp Med (1995) 1.40

Characterization of a spinach psbS cDNA encoding the 22 kDa protein of photosystem II. FEBS Lett (1992) 1.37

Biotin tagging deletion analysis of domain limits involved in protein-macromolecular interactions. Mapping the tau binding domain of the DNA polymerase III alpha subunit. J Biol Chem (1996) 1.35

tau binds and organizes Escherichia coli replication proteins through distinct domains. Domain IV, located within the unique C terminus of tau, binds the replication fork, helicase, DnaB. J Biol Chem (2000) 1.34

Nucleotide sequence and chromosomal location of Cab11 and Cab12, the genes for the fourth polypeptide of the photosystem I light-harvesting antenna (LHCI). FEBS Lett (1991) 1.34

Glu280 is the nucleophile in the active site of Clostridium thermocellum CelC, a family A endo-beta-1,4-glucanase. J Biol Chem (1993) 1.33

Mass spectrometry and proteomics. Curr Opin Chem Biol (2000) 1.32

Multiple cytokines activate phosphatidylinositol 3-kinase in hemopoietic cells. Association of the enzyme with various tyrosine-phosphorylated proteins. J Biol Chem (1994) 1.31

Fas-induced apoptosis of T cells occurs independently of ceramide generation. Proc Natl Acad Sci U S A (1997) 1.31

Partial N-terminal amino acid sequences of three nonstructural proteins of two flaviviruses. Virology (1986) 1.31

Protein identification by capillary zone electrophoresis/microelectrospray ionization-tandem mass spectrometry at the subfemtomole level. Anal Chem (1996) 1.31

Size classes of products synthesized processively by two subassemblies of Escherichia coli DNA polymerase III holoenzyme. J Biol Chem (1982) 1.30

B cell antigen receptor cross-linking induces phosphorylation of the p21ras oncoprotein activators SHC and mSOS1 as well as assembly of complexes containing SHC, GRB-2, mSOS1, and a 145-kDa tyrosine-phosphorylated protein. J Immunol (1994) 1.30

Molecular cloning and expression of the gene encoding the kinetoplast-associated type II DNA topoisomerase of Crithidia fasciculata. Mol Biochem Parasitol (1992) 1.30

Protein identification with a single accurate mass of a cysteine-containing peptide and constrained database searching. Anal Chem (2000) 1.30

A filter assay for thymidylate synthetase using 5-fluoro-2'-deoxyuridylate as an active site titrant. Biochemistry (1974) 1.29

In vivo assembly of overproduced DNA polymerase III. Overproduction, purification, and characterization of the alpha, alpha-epsilon, and alpha-epsilon-theta subunits. J Biol Chem (1996) 1.28

The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro. J Biol Chem (1998) 1.28

Advances in proteome analysis by mass spectrometry. J Biol Chem (2001) 1.27

Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation. Rapid Commun Mass Spectrom (2001) 1.27

The mitochondrial antioxidant defence system and its response to oxidative stress. Proteomics (2001) 1.25

The beta subunit of the DNA polymerase III holoenzyme becomes inaccessible to antibody after formation of an initiation complex with primed DNA. J Biol Chem (1982) 1.24

Structural and functional relationships in two families of beta-1,4-glycanases. Eur J Biochem (1991) 1.24

Characterization of a major protein in GLUT4 vesicles. Concentration in the vesicles and insulin-stimulated translocation to the plasma membrane. J Biol Chem (1994) 1.24

The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame. Nucleic Acids Res (1986) 1.24

Molecular characterization of the transcription termination factor from human mitochondria. J Biol Chem (1993) 1.23

Proteome analysis: biological assay or data archive? Electrophoresis (1998) 1.23

Purification and characterization of the beta subunit of the DNA polymerase III holoenzyme of Escherichia coli. J Biol Chem (1980) 1.21

Role of the core DNA polymerase III subunits at the replication fork. Alpha is the only subunit required for processive replication. J Biol Chem (1998) 1.21

A role for poly(ADP-ribose) polymerase in the transcriptional regulation of the melanoma growth stimulatory activity (CXCL1) gene expression. J Biol Chem (2000) 1.20

Approaches to labeling and identification of active site residues in glycosidases. Protein Sci (1995) 1.20

Simultaneous detection and identification of O-GlcNAc-modified glycoproteins using liquid chromatography-tandem mass spectrometry. Anal Chem (2000) 1.19

Identification of the beta-binding domain of the alpha subunit of Escherichia coli polymerase III holoenzyme. J Biol Chem (1996) 1.19

RGSZ1, a Gz-selective RGS protein in brain. Structure, membrane association, regulation by Galphaz phosphorylation, and relationship to a Gz gtpase-activating protein subfamily. J Biol Chem (1998) 1.19

Ceramide profiling of complex lipid mixtures by electrospray ionization mass spectrometry. Anal Biochem (1997) 1.19