A standardized nomenclature for adenosine deaminases that act on RNA.

PubWeight™: 2.50‹?› | Rank: Top 2%

🔗 View Article (PMC 1369539)

Published in RNA on September 01, 1997

Authors

B L Bass, K Nishikura, W Keller, P H Seeburg, R B Emeson, M A O'Connell, C E Samuel, A Herbert

Articles citing this

Antiviral actions of interferons. Clin Microbiol Rev (2001) 13.06

RNA editing by adenosine deaminases that act on RNA. Annu Rev Biochem (2001) 9.66

RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans. Proc Natl Acad Sci U S A (1998) 4.63

Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes. Microbiol Mol Biol Rev (1998) 3.26

Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J (1998) 3.23

A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. RNA (2000) 3.06

Large-scale mRNA sequencing determines global regulation of RNA editing during brain development. Genome Res (2009) 2.75

Human RNA-specific adenosine deaminase ADAR1 transcripts possess alternative exon 1 structures that initiate from different promoters, one constitutively active and the other interferon inducible. Proc Natl Acad Sci U S A (1999) 2.33

Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA. Proc Natl Acad Sci U S A (1999) 2.08

Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2. EMBO J (1998) 1.98

dADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing. RNA (2000) 1.95

A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing. RNA (2000) 1.71

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains. Genome Biol (2012) 1.68

RNA editing of the Drosophila para Na(+) channel transcript. Evolutionary conservation and developmental regulation. Genetics (2000) 1.67

Adenosine deaminases acting on RNA (ADARs) are both antiviral and proviral. Virology (2011) 1.62

The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers. Cancer Cell (2015) 1.61

Hepatitis delta virus RNA editing is highly specific for the amber/W site and is suppressed by hepatitis delta antigen. Mol Cell Biol (1998) 1.53

RNA editing and alternative splicing: the importance of co-transcriptional coordination. EMBO Rep (2006) 1.48

In vitro analysis of the binding of ADAR2 to the pre-mRNA encoding the GluR-B R/G site. RNA (2000) 1.47

RNA editing activity is associated with splicing factors in lnRNP particles: The nuclear pre-mRNA processing machinery. Proc Natl Acad Sci U S A (2001) 1.42

tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J (2002) 1.38

Altered RNA editing in mice lacking ADAR2 autoregulation. Mol Cell Biol (2006) 1.36

Intronic Alus influence alternative splicing. PLoS Genet (2008) 1.35

Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene. Nucleic Acids Res (2004) 1.26

The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences. Nucleic Acids Res (1998) 1.21

A distant cis acting intronic element induces site-selective RNA editing. Nucleic Acids Res (2012) 1.14

Nucleocytoplasmic distribution of human RNA-editing enzyme ADAR1 is modulated by double-stranded RNA-binding domains, a leucine-rich export signal, and a putative dimerization domain. Mol Biol Cell (2002) 1.14

Organization of the mouse RNA-specific adenosine deaminase Adar1 gene 5'-region and demonstration of STAT1-independent, STAT2-dependent transcriptional activation by interferon. Virology (2008) 1.12

Adenosine deaminases acting on RNA, RNA editing, and interferon action. J Interferon Cytokine Res (2010) 1.11

ADAR proteins: double-stranded RNA and Z-DNA binding domains. Curr Top Microbiol Immunol (2012) 1.09

Regulation of glutamate receptor B pre-mRNA splicing by RNA editing. Nucleic Acids Res (2007) 1.09

Mutation in pre-mRNA adenosine deaminase markedly attenuates neuronal tolerance to O2 deprivation in Drosophila melanogaster. J Clin Invest (2001) 1.07

The C-terminal domain of RNA Pol II helps ensure that editing precedes splicing of the GluR-B transcript. RNA (2007) 1.07

Phosphorylation of the RNA-dependent protein kinase regulates its RNA-binding activity. Nucleic Acids Res (2001) 1.05

A high-throughput screen to identify enhancers of ADAR-mediated RNA-editing. RNA Biol (2013) 1.04

Recognition and coupling of A-to-I edited sites are determined by the tertiary structure of the RNA. Nucleic Acids Res (2009) 1.04

Chimeric double-stranded RNA-specific adenosine deaminase ADAR1 proteins reveal functional selectivity of double-stranded RNA-binding domains from ADAR1 and protein kinase PKR. Proc Natl Acad Sci U S A (2000) 1.04

Localization of hepatitis delta virus RNA in the nucleus of human cells. RNA (1998) 1.02

ADAR1 and ADAR2 expression and editing activity during forebrain development. Dev Neurosci (2009) 1.01

A-to-I editing of microRNAs in the mammalian brain increases during development. Genome Res (2012) 1.01

An extra double-stranded RNA binding domain confers high activity to a squid RNA editing enzyme. RNA (2009) 1.00

The RNA-editing enzyme ADAR1 is localized to the nascent ribonucleoprotein matrix on Xenopus lampbrush chromosomes but specifically associates with an atypical loop. J Cell Biol (1999) 0.99

Alu elements shape the primate transcriptome by cis-regulation of RNA editing. Genome Biol (2014) 0.97

ADAR1 regulates ARHGAP26 gene expression through RNA editing by disrupting miR-30b-3p and miR-573 binding. RNA (2013) 0.96

The properties of a tRNA-specific adenosine deaminase from Drosophila melanogaster support an evolutionary link between pre-mRNA editing and tRNA modification. Mol Cell Biol (2000) 0.95

A novel RNA pentaloop fold involved in targeting ADAR2. RNA (2005) 0.93

Identification of a selective nuclear import signal in adenosine deaminases acting on RNA. Nucleic Acids Res (2009) 0.93

Identification of the yeast cytidine deaminase CDD1 as an orphan C-->U RNA editase. Nucleic Acids Res (2001) 0.91

A transition state analogue for an RNA-editing reaction. J Am Chem Soc (2004) 0.91

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity. Nat Struct Mol Biol (2016) 0.89

The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes. Mamm Genome (2015) 0.89

Substrate-dependent contribution of double-stranded RNA-binding motifs to ADAR2 function. Mol Biol Cell (2006) 0.86

An RNA editor, adenosine deaminase acting on double-stranded RNA (ADAR1). J Interferon Cytokine Res (2014) 0.86

Recognition of duplex RNA by the deaminase domain of the RNA editing enzyme ADAR2. Nucleic Acids Res (2015) 0.85

Regulation of the RNA-dependent protein kinase by triple helix formation. Nucleic Acids Res (2000) 0.84

Site-specific modification and RNA crosslinking of the RNA-binding domain of PKR. Nucleic Acids Res (2000) 0.84

Extra double-stranded RNA binding domain (dsRBD) in a squid RNA editing enzyme confers resistance to high salt environment. J Biol Chem (2012) 0.83

Revealing editing and SNPs of microRNAs in colon tissues by analyzing high-throughput sequencing profiles of small RNAs. BMC Genomics (2014) 0.80

Host response to polyomavirus infection is modulated by RNA adenosine deaminase ADAR1 but not by ADAR2. J Virol (2011) 0.80

RNA Editing Modulates Human Hepatic Aryl Hydrocarbon Receptor Expression by Creating MicroRNA Recognition Sequence. J Biol Chem (2015) 0.78

A Phenotypic Screen for Functional Mutants of Human Adenosine Deaminase Acting on RNA 1. ACS Chem Biol (2015) 0.77

Adaptation of A-to-I RNA editing in Drosophila. PLoS Genet (2017) 0.75

Accurate detection for a wide range of mutation and editing sites of microRNAs from small RNA high-throughput sequencing profiles. Nucleic Acids Res (2016) 0.75

A-to-I RNA Editing Up-regulates Human Dihydrofolate Reductase in Breast Cancer. J Biol Chem (2017) 0.75

DNA editing in DNA/RNA hybrids by adenosine deaminases that act on RNA. Nucleic Acids Res (2017) 0.75

Probing RNA recognition by human ADAR2 using a high-throughput mutagenesis method. Nucleic Acids Res (2016) 0.75

Articles by these authors

(truncated to the top 100)

A system for shotgun DNA sequencing. Nucleic Acids Res (1981) 52.99

Supercoil sequencing: a fast and simple method for sequencing plasmid DNA. DNA (1985) 40.01

Human tumour necrosis factor: precursor structure, expression and homology to lymphotoxin. Nature (1985) 13.04

A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans. Science (2001) 11.86

Developmental and regional expression in the rat brain and functional properties of four NMDA receptors. Neuron (1994) 11.44

Complete nucleotide sequences of the T24 human bladder carcinoma oncogene and its normal homologue. Nature (1983) 10.64

Tyrosine kinase receptor with extensive homology to EGF receptor shares chromosomal location with neu oncogene. Science (1985) 9.12

Mammalian deoxyribonucleic acid-dependent ribonucleic acid polymerases. I. Purification and properties of an -amanitin-sensitive ribonucleic acid polymerase and stimulatory factors from HeLa and KB cells. J Biol Chem (1973) 8.86

Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis. Proc Natl Acad Sci U S A (1975) 8.75

Domain interaction between NMDA receptor subunits and the postsynaptic density protein PSD-95. Science (1995) 8.61

Interferons and their actions. Annu Rev Biochem (1987) 8.36

Nucleotide sequence and amplification in bacteria of structural gene for rat growth hormone. Nature (1977) 7.97

Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature (1997) 7.92

The presentation and use of height and weight data for comparing the nutritional status of groups of children under the age of 10 years. Bull World Health Organ (1977) 7.57

Transcription of Simian virus 40. I. Separation of the strands of SV40 DNA and hybridization of the separated strands to RNA extracted from lytically infected and transformed cells. J Mol Biol (1972) 7.49

Stepwise assembly of a pre-mRNA splicing complex requires U-snRNPs and specific intron sequences. Cell (1985) 7.49

The primary structure and genetic organization of the bovine papillomavirus type 1 genome. Nature (1982) 7.24

RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell (1991) 6.97

Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2. Nature (2000) 6.67

Heteromeric NMDA receptors: molecular and functional distinction of subtypes. Science (1992) 6.49

The 5' terminus of the RNA moiety of U1 small nuclear ribonucleoprotein particles is required for the splicing of messenger RNA precursors. Cell (1984) 6.25

Biological properties of human c-Ha-ras1 genes mutated at codon 12. Nature (1984) 6.21

Structure and organization of the human Ki-ras proto-oncogene and a related processed pseudogene. Nature (1983) 5.90

Human leukocyte interferon produced by E. coli is biologically active. Nature (1980) 5.86

Splicing of in vitro synthesized messenger RNA precursors in HeLa cell extracts. Cell (1983) 5.82

Biological catalysis by RNA. Annu Rev Biochem (1986) 5.69

RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell (1993) 5.62

Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs. Mol Cell (1998) 5.60

Cloning and expression of human tissue-type plasminogen activator cDNA in E. coli. Nature (1983) 5.27

Control of kinetic properties of AMPA receptor channels by nuclear RNA editing. Science (1994) 5.21

The distribution of 13 GABAA receptor subunit mRNAs in the rat brain. I. Telencephalon, diencephalon, mesencephalon. J Neurosci (1992) 5.02

Regulation of alternative splicing by RNA editing. Nature (1999) 5.00

Tripartite structure of the avian erythroblastosis virus E26 transforming gene. Nature (1984) 4.99

Interaction of RNA polymerase with promoters from bacteriophage fd. Eur J Biochem (1977) 4.94

Adenovirus VAI RNA antagonizes the antiviral action of interferon by preventing activation of the interferon-induced eIF-2 alpha kinase. Cell (1986) 4.72

Importance of AMPA receptors for hippocampal synaptic plasticity but not for spatial learning. Science (1999) 4.56

Divalent ion permeability of AMPA receptor channels is dominated by the edited form of a single subunit. Neuron (1992) 4.53

The structure of eight distinct cloned human leukocyte interferon cDNAs. Nature (1981) 4.50

The distribution of thirteen GABAA receptor subunit mRNAs in the rat brain. III. Embryonic and postnatal development. J Neurosci (1992) 4.45

Importance of a novel GABAA receptor subunit for benzodiazepine pharmacology. Nature (1989) 4.45

Characterization of purified DNA-relaxing enzyme from human tissue culture cells. Proc Natl Acad Sci U S A (1975) 4.39

Expression of active human factor VIII from recombinant DNA clones. Nature (1984) 4.36

Relative abundance of subunit mRNAs determines gating and Ca2+ permeability of AMPA receptors in principal neurons and interneurons in rat CNS. Neuron (1995) 4.24

The biochemistry of 3'-end cleavage and polyadenylation of messenger RNA precursors. Annu Rev Biochem (1992) 4.20

Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Science (2000) 4.19

Activation of Ki-ras2 gene in human colon and lung carcinomas by two different point mutations. Nature (1983) 4.15

Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase. Mol Cell Biol (1995) 4.12

A specific base transition occurs on replicating hepatitis delta virus RNA. J Virol (1990) 4.05

RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature (1996) 4.04

Stepwise relaxation of supercoiled SV40 DNA. Cold Spring Harb Symp Quant Biol (1975) 4.03

Crystal structure of dimeric HIV-1 capsid protein. Nat Struct Biol (1996) 3.93

A mammalian RNA editing enzyme. Nature (1996) 3.90

Cleavage maps of DNA from adenovirus types 2 and 5 by restriction endonucleases EcoRI and HpaI. Cold Spring Harb Symp Quant Biol (1975) 3.87

The three-dimensional structure of canine parvovirus and its functional implications. Science (1991) 3.87

A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity. Cell (2000) 3.86

A family of AMPA-selective glutamate receptors. Science (1990) 3.85

Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing. Proc Natl Acad Sci U S A (1994) 3.85

Direct expression in Escherichia coli of a DNA sequence coding for human growth hormone. Nature (1979) 3.80

A developmentally regulated activity that unwinds RNA duplexes. Cell (1987) 3.79

Nucleotide sequence analysis of the leader segments in a cloned copy of adenovirus 2 fiber mRNA. Cell (1979) 3.78

Translocation of an immunoglobulin kappa locus to a region 3' of an unrearranged c-myc oncogene enhances c-myc transcription. Proc Natl Acad Sci U S A (1983) 3.75

Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase. EMBO J (1994) 3.75

Degradation of DNA RNA hybrids by ribonuclease H and DNA polymerases of cellular and viral origin. Proc Natl Acad Sci U S A (1972) 3.58

Transcriptional activation of an unrearranged and untranslocated c-myc oncogene by translocation of a C lambda locus in Burkitt. Proc Natl Acad Sci U S A (1983) 3.53

Flip and flop: a cell-specific functional switch in glutamate-operated channels of the CNS. Science (1990) 3.53

Generation of histone mRNA 3' ends by endonucleolytic cleavage of the pre-mRNA in a snRNP-dependent in vitro reaction. EMBO J (1986) 3.45

Insulin resistance, oxidative stress, hypertension, and leukocyte telomere length in men from the Framingham Heart Study. Aging Cell (2006) 3.44

Differential expression of the normal and of the translocated human c-myc oncogenes in B cells. Proc Natl Acad Sci U S A (1983) 3.43

Differential expression of the translocated and the untranslocated c-myc oncogene in Burkitt lymphoma. Science (1983) 3.40

Differential signal transduction by five splice variants of the PACAP receptor. Nature (1993) 3.38

Survey of medical training in cytopathology carried out by the journal Cytopathology. Cytopathology (2010) 3.32

Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I. Science (1996) 3.29

The role of gamma interferon in antimicrobial immunity. Curr Opin Microbiol (2001) 3.28

Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J (1998) 3.23

A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs. Proc Natl Acad Sci U S A (1989) 3.23

cDNA structures and regulation of two interferon-induced human Mx proteins. Mol Cell Biol (1989) 3.20

Structural determinants of ion flow through recombinant glutamate receptor channels. Science (1991) 3.18

Functions and mechanisms of RNA editing. Annu Rev Genet (2000) 3.14

Construction and analysis of recombinant DNA for human chorionic somatomammotropin. Nature (1977) 3.13

Coupling termination of transcription to messenger RNA maturation in yeast. Science (1998) 3.09

Adenovirus VAI RNA prevents phosphorylation of the eukaryotic initiation factor 2 alpha subunit subsequent to infection. Proc Natl Acad Sci U S A (1985) 3.09

Determinants of Ca2+ permeability in both TM1 and TM2 of high affinity kainate receptor channels: diversity by RNA editing. Neuron (1993) 3.08

A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. RNA (2000) 3.06

Transcription of simian virus 40. 3. Mapping of "early" and "late" species of RNA. Proc Natl Acad Sci U S A (1973) 3.04

Lutropin-choriogonadotropin receptor: an unusual member of the G protein-coupled receptor family. Science (1989) 3.03

3' cleavage and polyadenylation of mRNA precursors in vitro requires a poly(A) polymerase, a cleavage factor, and a snRNP. Cell (1988) 3.01

The sequence of human serum albumin cDNA and its expression in E. coli. Nucleic Acids Res (1981) 2.97

Antisense RNA of proto-oncogene c-fos blocks renewed growth of quiescent 3T3 cells. Mol Cell Biol (1987) 2.97

Primary structure of the human Met- and Leu-enkephalin precursor and its mRNA. Nature (1982) 2.96

Codon-improved Cre recombinase (iCre) expression in the mouse. Genesis (2002) 2.92

The revised BSCC terminology for abnormal cervical cytology. Cytopathology (2008) 2.91

Comparison of mycobacteria growth indicator tube with BACTEC 460 for detection and recovery of mycobacteria from clinical specimens. J Clin Microbiol (1996) 2.88

Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities. Biochemistry (2000) 2.85

Early-onset epilepsy and postnatal lethality associated with an editing-deficient GluR-B allele in mice. Science (1995) 2.78

The c-sis gene encodes a precursor of the B chain of platelet-derived growth factor. EMBO J (1984) 2.77

Functional properties of recombinant rat GABAA receptors depend upon subunit composition. Neuron (1990) 2.75

Prevalence of protein-energy malnutrition. World Health Stat Q (1983) 2.74

The human U1A snRNP protein regulates polyadenylation via a direct interaction with poly(A) polymerase. Cell (1994) 2.70

RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3'-end processing factor. Science (1994) 2.70

BSCC terminology for cervical cytology: two or three tiers? Why not five, seven or even 14? Cytopathology (2004) 2.68