Genetic variation in the 3' non-coding region of dengue viruses.

PubWeight™: 1.71‹?› | Rank: Top 3%

🔗 View Article (PMID 11222098)

Published in Virology on March 01, 2001

Authors

A C Shurtleff1, D W Beasley, J J Chen, H Ni, M T Suderman, H Wang, R Xu, E Wang, S C Weaver, D M Watts, K L Russell, A D Barrett

Author Affiliations

1: Center for Tropical Diseases, University of Texas Medical Branch, Galveston, Texas 77555-0609, USA.

Articles citing this

Microevolution and virulence of dengue viruses. Adv Virus Res (2003) 3.41

Long-range RNA-RNA interactions circularize the dengue virus genome. J Virol (2005) 2.48

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets. Nucleic Acids Res (2012) 2.46

Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence. J Virol (2005) 2.35

Efficiency of dengue serotype 2 virus strains to infect and disseminate in Aedes aegypti. Am J Trop Med Hyg (2003) 2.16

Potential of ancestral sylvatic dengue-2 viruses to re-emerge. Virology (2006) 1.49

Genetic determinants of virulence in pathogenic lineage 2 West Nile virus strains. Emerg Infect Dis (2008) 1.48

Structure and function of the 3' terminal six nucleotides of the west nile virus genome in viral replication. J Virol (2004) 1.33

Sequence comparison and secondary structure analysis of the 3' noncoding region of flavivirus genomes reveals multiple pseudoknots. RNA (2001) 1.25

Dengue virus type 3 vaccine candidates generated by introduction of deletions in the 3' untranslated region (3'-UTR) or by exchange of the DENV-3 3'-UTR with that of DENV-4. Vaccine (2007) 1.15

Functional RNA elements in the dengue virus genome. Viruses (2011) 1.11

Identification of dengue virus in respiratory specimens from a patient who had recently traveled from a region where dengue virus infection is endemic. J Clin Microbiol (2007) 1.10

Are viral small RNA regulating Dengue virus replication beyond serotype 2? Proc Natl Acad Sci U S A (2014) 1.09

Cellular oxidative stress response controls the antiviral and apoptotic programs in dengue virus-infected dendritic cells. PLoS Pathog (2014) 1.07

Size heterogeneity in the 3' noncoding region of South American isolates of yellow fever virus. J Virol (2005) 1.06

Genetic and phenotypic characterization of sylvatic dengue virus type 2 strains. Virology (2008) 1.04

Identification of cis-acting elements in the 3'-untranslated region of the dengue virus type 2 RNA that modulate translation and replication. J Biol Chem (2011) 1.01

Novel dengue virus type 1 from travelers to Yap State, Micronesia. Emerg Infect Dis (2006) 1.00

Highly divergent dengue virus type 1 genotype sets a new distance record. Sci Rep (2016) 0.97

Genetic characterization of early isolates of Japanese encephalitis virus: genotype II has been circulating since at least 1951. J Gen Virol (2009) 0.96

Identifying and quantifying genotypes in polyclonal infections due to single species. Emerg Infect Dis (2006) 0.95

Genetic relationships and evolution of genotypes of yellow fever virus and other members of the yellow fever virus group within the Flavivirus genus based on the 3' noncoding region. J Virol (2004) 0.95

Reconstruction of the Evolutionary History and Dispersal of Usutu Virus, a Neglected Emerging Arbovirus in Europe and Africa. MBio (2016) 0.94

Density-dependent competitive suppression of sylvatic dengue virus by endemic dengue virus in cultured mosquito cells. Vector Borne Zoonotic Dis (2008) 0.89

Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome. Nucleic Acids Res (2013) 0.88

Requirements for efficient minus strand strong-stop DNA transfer in human immunodeficiency virus 1. RNA Biol (2011) 0.87

Regulation of Flavivirus RNA synthesis and replication. Curr Opin Virol (2014) 0.86

Overlapping local and long-range RNA-RNA interactions modulate dengue virus genome cyclization and replication. J Virol (2015) 0.86

Dengue virus markers of virulence and pathogenicity. Future Virol (2009) 0.83

Genetic and phenotypic characterization of sylvatic dengue virus type 4 strains. Virology (2011) 0.82

Elevated dengue virus nonstructural protein 1 serum levels and altered toll-like receptor 4 expression, nitric oxide, and tumor necrosis factor alpha production in dengue hemorrhagic Fever patients. J Trop Med (2014) 0.78

Genetic variation in the 3' untranslated region of dengue virus serotype 3 strains isolated from mosquitoes and humans in Brazil. Virol J (2013) 0.78

Functional Information Stored in the Conserved Structural RNA Domains of Flavivirus Genomes. Front Microbiol (2017) 0.75

Articles by these authors

Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature (2000) 15.53

LDL receptor-related protein 5 (LRP5) affects bone accrual and eye development. Cell (2001) 11.99

Vagus nerve stimulation attenuates the systemic inflammatory response to endotoxin. Nature (2000) 11.49

High mobility group 1 protein (HMG-1) stimulates proinflammatory cytokine synthesis in human monocytes. J Exp Med (2000) 7.38

Regeneration of ischemic cardiac muscle and vascular endothelium by adult stem cells. J Clin Invest (2001) 7.20

HCAR and MCAR: the human and mouse cellular receptors for subgroup C adenoviruses and group B coxsackieviruses. Proc Natl Acad Sci U S A (1997) 6.92

Kaposi's sarcoma-associated herpesvirus gene expression in endothelial (spindle) tumor cells. J Virol (1997) 6.61

Re-emergence of Chikungunya and O'nyong-nyong viruses: evidence for distinct geographical lineages and distant evolutionary relationships. J Gen Virol (2000) 6.43

Prevention of neural-tube defects with folic acid in China. China-U.S. Collaborative Project for Neural Tube Defect Prevention. N Engl J Med (1999) 6.27

Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein. Science (1997) 6.10

Restricted expression of Kaposi sarcoma-associated herpesvirus (human herpesvirus 8) genes in Kaposi sarcoma. Proc Natl Acad Sci U S A (1996) 6.00

Effect of temperature on the vector efficiency of Aedes aegypti for dengue 2 virus. Am J Trop Med Hyg (1987) 5.53

Netrin-1 is required for commissural axon guidance in the developing vertebrate nervous system. Cell (1996) 5.45

E-cadherin expression is silenced by DNA hypermethylation in human breast and prostate carcinomas. Cancer Res (1995) 5.11

HMG-1 as a mediator of acute lung inflammation. J Immunol (2000) 4.78

A cell surface protein with herpesvirus entry activity (HveB) confers susceptibility to infection by mutants of herpes simplex virus type 1, herpes simplex virus type 2, and pseudorabies virus. Virology (1998) 4.67

An inhibitor of mTOR reduces neoplasia and normalizes p70/S6 kinase activity in Pten+/- mice. Proc Natl Acad Sci U S A (2001) 4.62

Control of the DNA damage checkpoint by chk1 and rad53 protein kinases through distinct mechanisms. Science (1999) 4.61

Dengue virus structural differences that correlate with pathogenesis. J Virol (1999) 4.26

Evolutionary analyses of the human genome. Nature (2001) 4.13

Gene expression profiles during the initial phase of salt stress in rice. Plant Cell (2001) 4.11

Assessing the clinical effectiveness of preventive maneuvers: analytic principles and systematic methods in reviewing evidence and developing clinical practice recommendations. A report by the Canadian Task Force on the Periodic Health Examination. J Clin Epidemiol (1990) 3.88

Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays. Genome Res (1998) 3.85

Quantum ground state and single-phonon control of a mechanical resonator. Nature (2010) 3.71

Evidence that the src gene product of Rous sarcoma virus is membrane associated. Virology (1980) 3.71

Association of a M(r) 90,000 phosphoprotein with protein kinase PKR in cells exhibiting enhanced phosphorylation of translation initiation factor eIF-2 alpha and premature shutoff of protein synthesis after infection with gamma 134.5- mutants of herpes simplex virus 1. Proc Natl Acad Sci U S A (1995) 3.68

Inhibition of angiogenesis by nonsteroidal anti-inflammatory drugs: insight into mechanisms and implications for cancer growth and ulcer healing. Nat Med (1999) 3.57

Altered urinary bladder function in mice lacking the vanilloid receptor TRPV1. Nat Neurosci (2002) 3.28

Requirement for math5 in the development of retinal ganglion cells. Genes Dev (2001) 3.26

Alternative gene form discovery and candidate gene selection from gene indexing projects. Genome Res (1998) 3.26

A family of proteins that inhibit signalling through tyrosine kinase receptors. Nature (1997) 3.26

Hyperexpression of mitogen-activated protein kinase in human breast cancer. J Clin Invest (1997) 3.26

Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses. J Virol (2000) 3.21

Deletion of the K(V)1.1 potassium channel causes epilepsy in mice. Neuron (1998) 3.18

An association between renal cell carcinoma and lymphoid malignancies. A case series of eight patients. Cancer (1996) 3.12

Randomised trial of intravenous immunoglobulin G, intravenous anti-D, and oral prednisone in childhood acute immune thrombocytopenic purpura. Lancet (1994) 3.12

Glycoprotein D of herpes simplex virus (HSV) binds directly to HVEM, a member of the tumor necrosis factor receptor superfamily and a mediator of HSV entry. J Virol (1997) 3.05

Cytokine production at the site of disease in human tuberculosis. Infect Immun (1993) 3.04

Cytokine production induced by Mycobacterium tuberculosis lipoarabinomannan. Relationship to chemical structure. J Immunol (1992) 3.03

Mammalian eukaryotic initiation factor 2 alpha kinases functionally substitute for GCN2 protein kinase in the GCN4 translational control mechanism of yeast. Proc Natl Acad Sci U S A (1993) 2.90

A floral transmitting tissue-specific glycoprotein attracts pollen tubes and stimulates their growth. Cell (1995) 2.85

Activation and accumulation of B cells in TACI-deficient mice. Nat Immunol (2001) 2.85

Evolutionary relationships and systematics of the alphaviruses. J Virol (2001) 2.84

Localization of human BRCA1 and its loss in high-grade, non-inherited breast carcinomas. Nat Genet (1999) 2.83

Diabetes as a risk factor for dementia and mild cognitive impairment: a meta-analysis of longitudinal studies. Intern Med J (2012) 2.81

Macrophage tropism of human immunodeficiency virus type 1 isolates from brain and lymphoid tissues predicts neurotropism independent of coreceptor specificity. J Virol (2001) 2.79

MicroRNA gene expression during retinoic acid-induced differentiation of human acute promyelocytic leukemia. Oncogene (2007) 2.79

Identification of a receptor for BLyS demonstrates a crucial role in humoral immunity. Nat Immunol (2000) 2.78

Structures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution. Acta Crystallogr D Biol Crystallogr (1999) 2.77

Development and evaluation of serotype- and group-specific fluorogenic reverse transcriptase PCR (TaqMan) assays for dengue virus. J Clin Microbiol (2001) 2.75

Functions of cytoplasmic fibers in intracellular movements in BHK-21 cells. J Cell Biol (1978) 2.74

Ecology. Giant pandas in a changing landscape. Science (2001) 2.73

Sequential treatment of SH-SY5Y cells with retinoic acid and brain-derived neurotrophic factor gives rise to fully differentiated, neurotrophic factor-dependent, human neuron-like cells. J Neurochem (2000) 2.71

Inflammatory response, immunosuppression, and cancer recurrence after perioperative blood transfusions. Br J Anaesth (2013) 2.70

Ribosomal protein S7 as a novel modulator of p53-MDM2 interaction: binding to MDM2, stabilization of p53 protein, and activation of p53 function. Oncogene (2007) 2.68

Effect of peer led programme for asthma education in adolescents: cluster randomised controlled trial. BMJ (2001) 2.67

Adhesion formation after previous caesarean section-a meta-analysis and systematic review. BJOG (2010) 2.66

Heme-regulated eIF2alpha kinase (HRI) is required for translational regulation and survival of erythroid precursors in iron deficiency. EMBO J (2001) 2.62

In vitro and in vivo anticancer activities of synthetic macrocyclic ketone analogues of halichondrin B. Cancer Res (2001) 2.62

Strongly enhanced current densities in superconducting coated conductors of YBa2Cu3O7-x + BaZrO3. Nat Mater (2004) 2.61

Biophysical characterization and vector-specific antagonist activity of domain III of the tick-borne flavivirus envelope protein. J Virol (2001) 2.59

New approaches for studying and exploiting an old protuberance, the plant trichome. Ann Bot (2004) 2.54

Elevated levels of connective tissue growth factor, WISP-1, and CYR61 in primary breast cancers associated with more advanced features. Cancer Res (2001) 2.53

Development of Th1-type immune responses requires the type I cytokine receptor TCCR. Nature (2000) 2.51

Bcl-2 potentiates the maximal calcium uptake capacity of neural cell mitochondria. Proc Natl Acad Sci U S A (1996) 2.50

Integrin activation by R-ras. Cell (1996) 2.50

High mobility group box chromosomal protein 1: a novel proinflammatory mediator in synovitis. Arthritis Rheum (2002) 2.45

Telomerase extends the lifespan of virus-transformed human cells without net telomere lengthening. Proc Natl Acad Sci U S A (1999) 2.42

A theoretical solution for the frictionless rolling contact of cylindrical biphasic articular cartilage layers. J Biomech (1995) 2.42

On sample size calculation in bioequivalence trials. J Pharmacokinet Pharmacodyn (2001) 2.40

Changes in microfilament organization and surface topogrophy upon transformation of chick embryo fibroblasts with Rous sarcoma virus. Proc Natl Acad Sci U S A (1976) 2.38

GATA-1 expression pattern can be recapitulated in living transgenic zebrafish using GFP reporter gene. Development (1997) 2.38

Fire and flood management of coastal swamp enabled first rice paddy cultivation in east China. Nature (2007) 2.36

Haiti: absence of dengue hemorrhagic fever despite hyperendemic dengue virus transmission. Am J Trop Med Hyg (2001) 2.35

Discovering molecular pathways from protein interaction and gene expression data. Bioinformatics (2003) 2.32

Phorbol myristate acetate stimulates microtubule and 10-nm filament extension and lysosome redistribution in mouse macrophages. J Cell Biol (1980) 2.31

Phylogeny of the Simbu serogroup of the genus Bunyavirus. J Gen Virol (2001) 2.30

Anatomic consideration of C2 pedicle screw placement. Spine (Phila Pa 1976) (1996) 2.29

A UV-sensitive mutant of Arabidopsis defective in the repair of pyrimidine-pyrimidinone(6-4) dimers. Science (1993) 2.28

Translation initiation control by heme-regulated eukaryotic initiation factor 2alpha kinase in erythroid cells under cytoplasmic stresses. Mol Cell Biol (2001) 2.28

A PhoP-regulated outer membrane protease of Salmonella enterica serovar typhimurium promotes resistance to alpha-helical antimicrobial peptides. J Bacteriol (2000) 2.26

Mechanisms of DNA double strand break repair and chromosome aberration formation. Cytogenet Genome Res (2004) 2.26

Single-molecule recognition imaging microscopy. Proc Natl Acad Sci U S A (2004) 2.25

Determinants of increased energy expenditure in HIV-infected women. Am J Clin Nutr (1998) 2.21

Pinhole collimation for ultra-high-resolution, small-field-of-view SPECT. Phys Med Biol (1994) 2.19

Sphingolipids--the enigmatic lipid class: biochemistry, physiology, and pathophysiology. Toxicol Appl Pharmacol (1997) 2.19

NMR structure and mutagenesis of the inhibitor-of-apoptosis protein XIAP. Nature (1999) 2.18

Selective modulation of human natural killer cells in vivo after prolonged infusion of low dose recombinant interleukin 2. J Clin Invest (1993) 2.18

Collapsin response mediator protein-1 and the invasion and metastasis of cancer cells. J Natl Cancer Inst (2001) 2.17

Quality of life for children with fecal incontinence after surgically corrected anorectal malformation. J Pediatr Surg (2000) 2.17

Protective efficacy of oral whole-cell/recombinant-B-subunit cholera vaccine in Peruvian military recruits. Lancet (1994) 2.16

Energy transduction in ATP synthase. Nature (1998) 2.15

Human EZF, a Krüppel-like zinc finger protein, is expressed in vascular endothelial cells and contains transcriptional activation and repression domains. J Biol Chem (1998) 2.15

Ossifying fibromas of the jaw bone: 20 cases. Dentomaxillofac Radiol (2010) 2.15

TLR-signaling networks: an integration of adaptor molecules, kinases, and cross-talk. J Dent Res (2010) 2.14