Published in Biochem Biophys Res Commun on December 24, 2004
GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy. Mol Cell Proteomics (2008) 4.33
Phospho.ELM: a database of phosphorylation sites--update 2008. Nucleic Acids Res (2007) 3.47
KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Res (2007) 2.69
GPS: a comprehensive www server for phosphorylation sites prediction. Nucleic Acids Res (2005) 2.44
PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory. BMC Bioinformatics (2006) 2.34
SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res (2006) 1.88
Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Mol Biosyst (2011) 1.62
pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model. Biol Direct (2007) 1.46
Shugoshin-PP2A counteracts casein-kinase-1-dependent cleavage of Rec8 by separase. Nat Cell Biol (2010) 1.40
GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm. PLoS One (2010) 1.40
Intracellular localization and splicing regulation of FUS/TLS are variably affected by amyotrophic lateral sclerosis-linked mutations. Nucleic Acids Res (2010) 1.39
Prediction of kinase-specific phosphorylation sites using conditional random fields. Bioinformatics (2008) 1.38
Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies. PLoS One (2016) 1.38
ERK1 and ERK2 regulate embryonic stem cell self-renewal through phosphorylation of Klf4. Nat Struct Mol Biol (2012) 1.30
Activation of the TRPV4 ion channel is enhanced by phosphorylation. J Biol Chem (2009) 1.30
Prediction of Nepsilon-acetylation on internal lysines implemented in Bayesian Discriminant Method. Biochem Biophys Res Commun (2006) 1.24
Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection. Nucleic Acids Res (2008) 1.20
Yy1 as a molecular link between neuregulin and transcriptional modulation of peripheral myelination. Nat Neurosci (2010) 1.16
NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm. BMC Bioinformatics (2006) 1.12
PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity. BMC Bioinformatics (2011) 1.10
A phosphomimetic mutation at threonine-57 abolishes transactivation activity and alters nuclear localization pattern of human pregnane x receptor. Drug Metab Dispos (2009) 1.07
RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans. Nucleic Acids Res (2010) 1.03
Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions. BMC Genomics (2008) 1.01
Rho kinase II phosphorylation of the lipoprotein receptor LR11/SORLA alters amyloid-beta production. J Biol Chem (2010) 0.99
Negative regulation of the yeast ABC transporter Ycf1p by phosphorylation within its N-terminal extension. J Biol Chem (2008) 0.95
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship. BMC Bioinformatics (2010) 0.94
Charge environments around phosphorylation sites in proteins. BMC Struct Biol (2008) 0.91
Genealogy of an ancient protein family: the Sirtuins, a family of disordered members. BMC Evol Biol (2013) 0.88
Analysis of tarantula skeletal muscle protein sequences and identification of transcriptional isoforms. BMC Genomics (2009) 0.88
Signaling-dependent phosphorylation of mitotic centromere-associated kinesin regulates microtubule depolymerization and its centrosomal localization. J Biol Chem (2012) 0.88
Chk1-dependent constitutive phosphorylation of BLM helicase at serine 646 decreases after DNA damage. Mol Cancer Res (2010) 0.86
Mariner Mos1 transposase optimization by rational mutagenesis. Genetica (2009) 0.85
Yeast protein phosphatase 2A-Cdc55 regulates the transcriptional response to hyperosmolarity stress by regulating Msn2 and Msn4 chromatin recruitment. Mol Cell Biol (2012) 0.82
Non-catalytic participation of the Pin1 peptidyl-prolyl isomerase domain in target binding. Front Physiol (2013) 0.81
Using multitask classification methods to investigate the kinase-specific phosphorylation sites. Proteome Sci (2012) 0.81
Identification of potential Plk1 targets in a cell-cycle specific proteome through structural dynamics of kinase and Polo box-mediated interactions. PLoS One (2013) 0.81
Exploiting holistic approaches to model specificity in protein phosphorylation. Front Genet (2014) 0.81
Regulation of translesion DNA synthesis: Posttranslational modification of lysine residues in key proteins. DNA Repair (Amst) (2015) 0.80
Proteomics and the analysis of proteomic data: 2013 overview of current protein-profiling technologies. Curr Protoc Bioinformatics (2013) 0.79
An ensemble method approach to investigate kinase-specific phosphorylation sites. Int J Nanomedicine (2014) 0.79
A grammar inference approach for predicting kinase specific phosphorylation sites. PLoS One (2015) 0.78
The KLP-7 Residue S546 Is a Putative Aurora Kinase Site Required for Microtubule Regulation at the Centrosome in C. elegans. PLoS One (2015) 0.78
Centrosome/Cell cycle uncoupling and elimination in the endoreduplicating intestinal cells of C. elegans. PLoS One (2014) 0.76
PChopper: high throughput peptide prediction for MRM/SRM transition design. BMC Bioinformatics (2011) 0.75
jEcho: an Evolved weight vector to CHaracterize the protein's posttranslational modification mOtifs. Interdiscip Sci (2015) 0.75
Sensitization of TRPA1 by Protein Kinase A. PLoS One (2017) 0.75
DephosSite: a machine learning approach for discovering phosphotase-specific dephosphorylation sites. Sci Rep (2016) 0.75
GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy. Mol Cell Proteomics (2008) 4.33
CCL18 from tumor-associated macrophages promotes breast cancer metastasis via PITPNM3. Cancer Cell (2011) 3.31
CSS-Palm 2.0: an updated software for palmitoylation sites prediction. Protein Eng Des Sel (2008) 2.86
DOG 1.0: illustrator of protein domain structures. Cell Res (2009) 2.77
GPS: a comprehensive www server for phosphorylation sites prediction. Nucleic Acids Res (2005) 2.44
PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory. BMC Bioinformatics (2006) 2.34
Internalization of NK cells into tumor cells requires ezrin and leads to programmed cell-in-cell death. Cell Res (2009) 2.07
Direct interaction between survivin and Smac/DIABLO is essential for the anti-apoptotic activity of survivin during taxol-induced apoptosis. J Biol Chem (2003) 2.06
SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res (2006) 1.88
Structure of a CENP-A-histone H4 heterodimer in complex with chaperone HJURP. Genes Dev (2011) 1.87
A novel set of DNA methylation markers in urine sediments for sensitive/specific detection of bladder cancer. Clin Cancer Res (2007) 1.77
Phosphorylation of human Sgo1 by NEK2A is essential for chromosome congression in mitosis. Cell Res (2007) 1.71
Expression of seven main Rho family members in gastric carcinoma. Biochem Biophys Res Commun (2004) 1.63
NEK2A interacts with MAD1 and possibly functions as a novel integrator of the spindle checkpoint signaling. J Biol Chem (2004) 1.58
Structural disorder in the complex of human pregnane X receptor and the macrolide antibiotic rifampicin. Mol Endocrinol (2005) 1.55
Structural basis of heroin and cocaine metabolism by a promiscuous human drug-processing enzyme. Nat Struct Biol (2003) 1.46
Human Zwint-1 specifies localization of Zeste White 10 to kinetochores and is essential for mitotic checkpoint signaling. J Biol Chem (2004) 1.44
Aurora B kinase activation requires survivin priming phosphorylation by PLK1. J Mol Cell Biol (2010) 1.43
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinformatics (2006) 1.42
GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm. PLoS One (2010) 1.40
Stabilization of PML nuclear localization by conjugation and oligomerization of SUMO-3. Oncogene (2005) 1.33
Phosphorylation of HsMis13 by Aurora B kinase is essential for assembly of functional kinetochore. J Biol Chem (2008) 1.30
Nudel modulates kinetochore association and function of cytoplasmic dynein in M phase. Mol Biol Cell (2007) 1.30
Influence of mutations in hepatitis B virus surface protein on viral antigenicity and phenotype in occult HBV strains from blood donors. J Hepatol (2012) 1.29
Human NUF2 interacts with centromere-associated protein E and is essential for a stable spindle microtubule-kinetochore attachment. J Biol Chem (2007) 1.27
Prediction of Nepsilon-acetylation on internal lysines implemented in Bayesian Discriminant Method. Biochem Biophys Res Commun (2006) 1.24
PLK1 phosphorylates mitotic centromere-associated kinesin and promotes its depolymerase activity. J Biol Chem (2010) 1.24
Septin 7 interacts with centromere-associated protein E and is required for its kinetochore localization. J Biol Chem (2008) 1.21
TIP150 interacts with and targets MCAK at the microtubule plus ends. EMBO Rep (2009) 1.19
Characterization of protein kinase A-mediated phosphorylation of ezrin in gastric parietal cell activation. J Biol Chem (2003) 1.19
PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation. Mol Cell Proteomics (2009) 1.15
Systematic analysis of protein phosphorylation networks from phosphoproteomic data. Mol Cell Proteomics (2012) 1.15
A genome-wide analysis of sumoylation-related biological processes and functions in human nucleus. FEBS Lett (2005) 1.15
PALS1 specifies the localization of ezrin to the apical membrane of gastric parietal cells. J Biol Chem (2005) 1.15
PKA-mediated protein phosphorylation regulates ezrin-WWOX interaction. Biochem Biophys Res Commun (2006) 1.14
NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm. BMC Bioinformatics (2006) 1.12
CENP-E kinesin interacts with SKAP protein to orchestrate accurate chromosome segregation in mitosis. J Biol Chem (2011) 1.12
Phosphorylation of ezrin on threonine 567 produces a change in secretory phenotype and repolarizes the gastric parietal cell. J Cell Sci (2005) 1.12
Rho kinase phosphorylation promotes ezrin-mediated metastasis in hepatocellular carcinoma. Cancer Res (2011) 1.11
CPSS: a computational platform for the analysis of small RNA deep sequencing data. Bioinformatics (2012) 1.10
PinX1 is a novel microtubule-binding protein essential for accurate chromosome segregation. J Biol Chem (2009) 1.09
EB1 acetylation by P300/CBP-associated factor (PCAF) ensures accurate kinetochore-microtubule interactions in mitosis. Proc Natl Acad Sci U S A (2012) 1.09
MeMo: a web tool for prediction of protein methylation modifications. Nucleic Acids Res (2006) 1.09
Apoptosis of rat granulosa cells after staurosporine and serum withdrawal is suppressed by adenovirus-directed overexpression of prohibitin. Endocrinology (2006) 1.08
CPLA 1.0: an integrated database of protein lysine acetylation. Nucleic Acids Res (2010) 1.08
Reversal of the malignant phenotype of gastric cancer cells by inhibition of RhoA expression and activity. Clin Cancer Res (2004) 1.08
PRC1 cooperates with CLASP1 to organize central spindle plasticity in mitosis. J Biol Chem (2009) 1.06
CENP-U cooperates with Hec1 to orchestrate kinetochore-microtubule attachment. J Biol Chem (2010) 1.06
Mitotic regulator SKAP forms a link between kinetochore core complex KMN and dynamic spindle microtubules. J Biol Chem (2012) 1.05
Emperipolesis, entosis and beyond: dance with fate. Cell Res (2008) 1.05
A summary of computational resources for protein phosphorylation. Curr Protein Pept Sci (2010) 1.05
Proteomic identification and functional characterization of a novel ARF6 GTPase-activating protein, ACAP4. Mol Cell Proteomics (2006) 1.05
GPS-CCD: a novel computational program for the prediction of calpain cleavage sites. PLoS One (2011) 1.04
Helicobacter pylori VacA disrupts apical membrane-cytoskeletal interactions in gastric parietal cells. J Biol Chem (2008) 1.04
Polarized distribution of IQGAP proteins in gastric parietal cells and their roles in regulated epithelial cell secretion. Mol Biol Cell (2003) 1.03
The structure of the FANCM-MHF complex reveals physical features for functional assembly. Nat Commun (2012) 1.03
Syntaxin 3 is required for cAMP-induced acid secretion: streptolysin O-permeabilized gastric gland model. Am J Physiol Gastrointest Liver Physiol (2002) 1.03
GPS-PUP: computational prediction of pupylation sites in prokaryotic proteins. Mol Biosyst (2011) 1.01
A general user interface for prediction servers of proteins' post-translational modification sites. Nat Protoc (2006) 1.00
T follicular helper cells mediate expansion of regulatory B cells via IL-21 in Lupus-prone MRL/lpr mice. PLoS One (2013) 1.00
Differential secretome analysis reveals CST6 as a suppressor of breast cancer bone metastasis. Cell Res (2012) 1.00
Phosphorylation of microtubule-binding protein Hec1 by mitotic kinase Aurora B specifies spindle checkpoint kinase Mps1 signaling at the kinetochore. J Biol Chem (2013) 0.99
SUV39H1 orchestrates temporal dynamics of centromeric methylation essential for faithful chromosome segregation in mitosis. J Mol Cell Biol (2012) 0.98
Probing CENP-E function in chromosome dynamics using small molecule inhibitor syntelin. Cell Res (2010) 0.98
Phospho-regulation of HsCdc14A By Polo-like kinase 1 is essential for mitotic progression. J Biol Chem (2007) 0.98
CPLM: a database of protein lysine modifications. Nucleic Acids Res (2013) 0.98
Mitotic regulator Mis18β interacts with and specifies the centromeric assembly of molecular chaperone holliday junction recognition protein (HJURP). J Biol Chem (2014) 0.97
Towards a better understanding of the novel avian-origin H7N9 influenza A virus in China. Sci Rep (2013) 0.96
SUMO-1 modification increases human SOD1 stability and aggregation. Biochem Biophys Res Commun (2006) 0.96
GPS-YNO2: computational prediction of tyrosine nitration sites in proteins. Mol Biosyst (2011) 0.94
Phospho-regulated ACAP4-Ezrin interaction is essential for histamine-stimulated parietal cell secretion. J Biol Chem (2010) 0.93
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation. Nucleic Acids Res (2012) 0.93
Interaction of Skp1 with CENP-E at the midbody is essential for cytokinesis. Biochem Biophys Res Commun (2006) 0.93
Defect-Induced intrinsic magnetism in wide-gap III nitrides. Phys Rev Lett (2008) 0.92
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. Nucleic Acids Res (2009) 0.92
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases. Nucleic Acids Res (2013) 0.92
Computational analyses of TBC protein family in eukaryotes. Protein Pept Lett (2008) 0.91
TTK kinase is essential for the centrosomal localization of TACC2. FEBS Lett (2004) 0.91
Quasiparticle band gap of ZnO: high accuracy from the conventional G⁰W⁰ approach. Phys Rev Lett (2010) 0.91
Single-molecule detection of phosphorylation-induced plasticity changes during ezrin activation. FEBS Lett (2007) 0.90
GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes. PLoS One (2012) 0.90
Intracellular distribution and functional importance of vesicle-associated membrane protein 2 in gastric parietal cells. Gastroenterology (2002) 0.89
Mitotic phosphorylation of PRC1 at Thr470 is required for PRC1 oligomerization and proper central spindle organization. Cell Res (2007) 0.89
Dimerization of CPAP orchestrates centrosome cohesion plasticity. J Biol Chem (2009) 0.89
Localization and function of soluble N-ethylmaleimide-sensitive factor attachment protein-25 and vesicle-associated membrane protein-2 in functioning gastric parietal cells. J Biol Chem (2002) 0.89
Prediction of novel pre-microRNAs with high accuracy through boosting and SVM. Bioinformatics (2011) 0.88
Automatic validation of phosphopeptide identifications by the MS2/MS3 target-decoy search strategy. J Proteome Res (2008) 0.88
Effects of resveratrol and its derivatives on lipopolysaccharide-induced microglial activation and their structure-activity relationships. Chem Biol Interact (2008) 0.88