Published in J Chem Inf Model on December 28, 2007
Cortisone-reductase deficiency associated with heterozygous mutations in 11beta-hydroxysteroid dehydrogenase type 1. Proc Natl Acad Sci U S A (2011) 0.89
Thermo- and mesostabilizing protein interactions identified by temperature-dependent statistical potentials. Biophys J (2010) 0.85
Protein thermostability prediction within homologous families using temperature-dependent statistical potentials. PLoS One (2014) 0.84
Structural Rigidity and Protein Thermostability in Variants of Lipase A from Bacillus subtilis. PLoS One (2015) 0.80
Interactions between ionizable amino acid side chains at a lipid bilayer-water interface. J Phys Chem B (2011) 0.79
Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins. Nucleic Acids Res (2013) 0.78
Stability curve prediction of homologous proteins using temperature-dependent statistical potentials. PLoS Comput Biol (2014) 0.78
Predicting protein thermal stability changes upon point mutations using statistical potentials: Introducing HoTMuSiC. Sci Rep (2016) 0.77
The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins. Biol Direct (2014) 0.76
Distance-dependent statistical potentials for discriminating thermophilic and mesophilic proteins. Biochem Biophys Res Commun (2010) 0.76
Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0. Bioinformatics (2009) 2.03
PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality. BMC Bioinformatics (2011) 1.76
BeAtMuSiC: Prediction of changes in protein-protein binding affinity on mutations. Nucleic Acids Res (2013) 1.21
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins (2013) 1.20
Enhancing the stability and solubility of TEV protease using in silico design. Protein Sci (2007) 1.17
Specificity and phenetic relationships of iron- and manganese-containing superoxide dismutases on the basis of structure and sequence comparisons. J Biol Chem (2003) 1.09
Evidence that interaction between conserved residues in transmembrane helices 2, 3, and 7 are crucial for human VPAC1 receptor activation. Mol Pharmacol (2010) 0.99
The first peptides: the evolutionary transition between prebiotic amino acids and early proteins. J Theor Biol (2009) 0.98
A conserved cysteine residue is involved in disulfide bond formation between plant plasma membrane aquaporin monomers. Biochem J (2012) 0.96
Sequence-structure signals of 3D domain swapping in proteins. J Mol Biol (2003) 0.96
Probing the energetic and structural role of amino acid/nucleobase cation-pi interactions in protein-ligand complexes. J Biol Chem (2002) 0.94
Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein. Protein Sci (2011) 0.93
Structure-based mutant stability predictions on proteins of unknown structure. J Biotechnol (2012) 0.90
Stair motifs at protein-DNA interfaces: nonadditivity of H-bond, stacking, and cation-pi interactions. J Am Chem Soc (2004) 0.89
Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site. Bioinformatics (2011) 0.89
Development of novel statistical potentials describing cation-pi interactions in proteins and comparison with semiempirical and quantum chemistry approaches. J Chem Inf Model (2006) 0.88
In vitro and in silico design of alpha1-antitrypsin mutants with different conformational stabilities. J Mol Biol (2003) 0.86
Free-energy calculations of protein-ligand cation-pi and amino-pi interactions: from vacuum to proteinlike environments. J Am Chem Soc (2003) 0.86
SODa: an Mn/Fe superoxide dismutase prediction and design server. BMC Bioinformatics (2008) 0.86
Thermo- and mesostabilizing protein interactions identified by temperature-dependent statistical potentials. Biophys J (2010) 0.85
Modeling the temporal evolution of the Drosophila gene expression from DNA microarray time series. Phys Biol (2009) 0.84
Database-derived potentials dependent on protein size for in silico folding and design. Biophys J (2004) 0.84
Cation-π, amino-π, π-π, and H-bond interactions stabilize antigen-antibody interfaces. Proteins (2014) 0.84
Revisiting the correlation between proteins' thermoresistance and organisms' thermophilicity. Protein Eng Des Sel (2008) 0.84
Mn/Fe superoxide dismutase interaction fingerprints and prediction of oligomerization and metal cofactor from sequence. Proteins (2008) 0.84
Detection of perturbation phases and developmental stages in organisms from DNA microarray time series data. PLoS One (2011) 0.83
Robust non-linear differential equation models of gene expression evolution across Drosophila development. BMC Res Notes (2012) 0.83
Dynamic modeling of gene expression in prokaryotes: application to glucose-lactose diauxie in Escherichia coli. Syst Synth Biol (2011) 0.80
Gene expression model (in)validation by Fourier analysis. BMC Syst Biol (2010) 0.80
Design principles of a genetic alarm clock. PLoS One (2012) 0.79
Prelude and Fugue, predicting local protein structure, early folding regions and structural weaknesses. Bioinformatics (2006) 0.75
What is paradoxical about Levinthal paradox? J Biomol Struct Dyn (2002) 0.75