Published in Protein Eng Des Sel on February 02, 2008
Thermo- and mesostabilizing protein interactions identified by temperature-dependent statistical potentials. Biophys J (2010) 0.85
Protein thermostability prediction within homologous families using temperature-dependent statistical potentials. PLoS One (2014) 0.84
Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins. Nucleic Acids Res (2013) 0.78
Selection for Protein Kinetic Stability Connects Denaturation Temperatures to Organismal Temperatures and Provides Clues to Archaean Life. PLoS One (2016) 0.77
The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins. Biol Direct (2014) 0.76
Effect of codon message on xylanase thermal activity. J Biol Chem (2012) 0.75
Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0. Bioinformatics (2009) 2.03
PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality. BMC Bioinformatics (2011) 1.76
BeAtMuSiC: Prediction of changes in protein-protein binding affinity on mutations. Nucleic Acids Res (2013) 1.21
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins (2013) 1.20
Enhancing the stability and solubility of TEV protease using in silico design. Protein Sci (2007) 1.17
Specificity and phenetic relationships of iron- and manganese-containing superoxide dismutases on the basis of structure and sequence comparisons. J Biol Chem (2003) 1.09
Evidence that interaction between conserved residues in transmembrane helices 2, 3, and 7 are crucial for human VPAC1 receptor activation. Mol Pharmacol (2010) 0.99
The first peptides: the evolutionary transition between prebiotic amino acids and early proteins. J Theor Biol (2009) 0.98
A conserved cysteine residue is involved in disulfide bond formation between plant plasma membrane aquaporin monomers. Biochem J (2012) 0.96
Sequence-structure signals of 3D domain swapping in proteins. J Mol Biol (2003) 0.96
Probing the energetic and structural role of amino acid/nucleobase cation-pi interactions in protein-ligand complexes. J Biol Chem (2002) 0.94
Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein. Protein Sci (2011) 0.93
Structure-based mutant stability predictions on proteins of unknown structure. J Biotechnol (2012) 0.90
Stair motifs at protein-DNA interfaces: nonadditivity of H-bond, stacking, and cation-pi interactions. J Am Chem Soc (2004) 0.89
Thermostability of salt bridges versus hydrophobic interactions in proteins probed by statistical potentials. J Chem Inf Model (2007) 0.88
Development of novel statistical potentials describing cation-pi interactions in proteins and comparison with semiempirical and quantum chemistry approaches. J Chem Inf Model (2006) 0.88
Design and characterization of novel cell-penetrating peptides from pituitary adenylate cyclase-activating polypeptide. J Control Release (2012) 0.87
In vitro and in silico design of alpha1-antitrypsin mutants with different conformational stabilities. J Mol Biol (2003) 0.86
Free-energy calculations of protein-ligand cation-pi and amino-pi interactions: from vacuum to proteinlike environments. J Am Chem Soc (2003) 0.86
SODa: an Mn/Fe superoxide dismutase prediction and design server. BMC Bioinformatics (2008) 0.86
Thermo- and mesostabilizing protein interactions identified by temperature-dependent statistical potentials. Biophys J (2010) 0.85
Cation-π, amino-π, π-π, and H-bond interactions stabilize antigen-antibody interfaces. Proteins (2014) 0.84
Database-derived potentials dependent on protein size for in silico folding and design. Biophys J (2004) 0.84
Modeling the temporal evolution of the Drosophila gene expression from DNA microarray time series. Phys Biol (2009) 0.84
Mn/Fe superoxide dismutase interaction fingerprints and prediction of oligomerization and metal cofactor from sequence. Proteins (2008) 0.84
Robust non-linear differential equation models of gene expression evolution across Drosophila development. BMC Res Notes (2012) 0.83
Dynamic modeling of gene expression in prokaryotes: application to glucose-lactose diauxie in Escherichia coli. Syst Synth Biol (2011) 0.80
Gene expression model (in)validation by Fourier analysis. BMC Syst Biol (2010) 0.80
Design principles of a genetic alarm clock. PLoS One (2012) 0.79
Avian lipocalin expression in chickens following Escherichia coli infection and inhibition of avian pathogenic Escherichia coli growth by Ex-FABP. Vet Immunol Immunopathol (2012) 0.78
Design of a truncated cardiotoxin-I analogue with potent insulinotropic activity. J Med Chem (2014) 0.77
Cardiotoxin-I: an unexpectedly potent insulinotropic agent. Chembiochem (2012) 0.76
Photoreleasable ligands to study intracrine angiotensin II signalling. J Physiol (2015) 0.75
Magnetic water-soluble cyano-bridged metal coordination nano-polymers. Chem Commun (Camb) (2006) 0.75
Development and pharmacological characterization of conformationally constrained urotensin II-related peptide agonists. J Med Chem (2013) 0.75
Prelude and Fugue, predicting local protein structure, early folding regions and structural weaknesses. Bioinformatics (2006) 0.75