Published in J Biol Chem on August 06, 2002
A medicinal chemist's guide to molecular interactions. J Med Chem (2010) 3.39
Binding of 5'-GTP to the C-terminal FeS cluster of the radical S-adenosylmethionine enzyme MoaA provides insights into its mechanism. Proc Natl Acad Sci U S A (2006) 2.16
Structure of coenzyme A-disulfide reductase from Staphylococcus aureus at 1.54 A resolution. Biochemistry (2006) 0.96
Structure and functional implications of a complex containing a segment of U6 RNA bound by a domain of Prp24. RNA (2010) 0.96
Absolute binding-free energies between standard RNA/DNA nucleobases and amino-acid sidechain analogs in different environments. Nucleic Acids Res (2014) 0.84
Role of the sulfonium center in determining the ligand specificity of human s-adenosylmethionine decarboxylase. Biochemistry (2009) 0.82
Computational analysis of amino acids and their sidechain analogs in crowded solutions of RNA nucleobases with implications for the mRNA-protein complementarity hypothesis. Nucleic Acids Res (2014) 0.81
Interpretation of intramolecular stacking effect on the fluorescence intensity decay of 3-methylbenzimidazolyl(5'-5')guanosine dinucleotides using a model of lifetime distribution. Eur Biophys J (2006) 0.78
Stacking interaction and its role in kynurenic acid binding to glutamate ionotropic receptors. J Mol Model (2011) 0.76
Discovery of Q203, a potent clinical candidate for the treatment of tuberculosis. Nat Med (2013) 2.19
Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0. Bioinformatics (2009) 2.03
PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality. BMC Bioinformatics (2011) 1.76
Molecular phylogenies of Blastocystis isolates from different hosts: implications for genetic diversity, identification of species, and zoonosis. J Clin Microbiol (2005) 1.52
Molecular genetics of para-aminosalicylic acid resistance in clinical isolates and spontaneous mutants of Mycobacterium tuberculosis. Antimicrob Agents Chemother (2009) 1.33
The presence of four iron-containing superoxide dismutase isozymes in trypanosomatidae: characterization, subcellular localization, and phylogenetic origin in Trypanosoma brucei. Free Radic Biol Med (2005) 1.31
BeAtMuSiC: Prediction of changes in protein-protein binding affinity on mutations. Nucleic Acids Res (2013) 1.21
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins (2013) 1.20
Enhancing the stability and solubility of TEV protease using in silico design. Protein Sci (2007) 1.17
Systematic analysis of pyrazinamide-resistant spontaneous mutants and clinical isolates of Mycobacterium tuberculosis. Antimicrob Agents Chemother (2012) 1.13
Specificity and phenetic relationships of iron- and manganese-containing superoxide dismutases on the basis of structure and sequence comparisons. J Biol Chem (2003) 1.09
Pivotal roles of the parasite PGD2 synthase and of the host D prostanoid receptor 1 in schistosome immune evasion. Eur J Immunol (2003) 1.05
Periplasmic domain of the sensor-kinase BvgS reveals a new paradigm for the Venus flytrap mechanism. Proc Natl Acad Sci U S A (2010) 1.01
Cation-pi/H-bond stair motifs at protein-DNA interfaces. J Mol Biol (2002) 1.00
The antimalarial ferroquine: role of the metal and intramolecular hydrogen bond in activity and resistance. ACS Chem Biol (2011) 0.99
Evidence that interaction between conserved residues in transmembrane helices 2, 3, and 7 are crucial for human VPAC1 receptor activation. Mol Pharmacol (2010) 0.99
The first peptides: the evolutionary transition between prebiotic amino acids and early proteins. J Theor Biol (2009) 0.98
Detection of three wound-induced proteins in papaya latex. Phytochemistry (2004) 0.97
A conserved cysteine residue is involved in disulfide bond formation between plant plasma membrane aquaporin monomers. Biochem J (2012) 0.96
Sequence-structure signals of 3D domain swapping in proteins. J Mol Biol (2003) 0.96
Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein. Protein Sci (2011) 0.93
X-ray structure of papaya chitinase reveals the substrate binding mode of glycosyl hydrolase family 19 chitinases. Biochemistry (2008) 0.92
Structural characterization of the papaya cysteine proteinases at low pH. Biochem Biophys Res Commun (2006) 0.91
Structure-based mutant stability predictions on proteins of unknown structure. J Biotechnol (2012) 0.90
Stair motifs at protein-DNA interfaces: nonadditivity of H-bond, stacking, and cation-pi interactions. J Am Chem Soc (2004) 0.89
Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs. PLoS One (2010) 0.89
Development of novel statistical potentials describing cation-pi interactions in proteins and comparison with semiempirical and quantum chemistry approaches. J Chem Inf Model (2006) 0.88
Thermostability of salt bridges versus hydrophobic interactions in proteins probed by statistical potentials. J Chem Inf Model (2007) 0.88
Solution structure of the single-domain prolyl cis/trans isomerase PIN1At from Arabidopsis thaliana. J Mol Biol (2002) 0.87
Structural analysis of an unusual bioactive N-acylated lipo-oligosaccharide LOS-IV in Mycobacterium marinum. J Am Chem Soc (2010) 0.87
In vitro and in silico design of alpha1-antitrypsin mutants with different conformational stabilities. J Mol Biol (2003) 0.86
Spectroscopic studies of diketoacids-metal interactions. A probing tool for the pharmacophoric intermetallic distance in the HIV-1 integrase active site. J Med Chem (2004) 0.86
Free-energy calculations of protein-ligand cation-pi and amino-pi interactions: from vacuum to proteinlike environments. J Am Chem Soc (2003) 0.86
Evolutionary changes in antimicrobial resistance of invasive Neisseria meningitidis isolates in Belgium from 2000 to 2010: increasing prevalence of penicillin nonsusceptibility. Antimicrob Agents Chemother (2012) 0.86
SODa: an Mn/Fe superoxide dismutase prediction and design server. BMC Bioinformatics (2008) 0.86
Purification and characterization of a wound-inducible thaumatin-like protein from the latex of Carica papaya. Phytochemistry (2009) 0.85
Ethionamide boosters. 2. Combining bioisosteric replacement and structure-based drug design to solve pharmacokinetic issues in a series of potent 1,2,4-oxadiazole EthR inhibitors. J Med Chem (2011) 0.85
Biochemical and electron paramagnetic resonance study of the iron superoxide dismutase from Plasmodium falciparum. Mol Biochem Parasitol (2002) 0.85
Identification of a mitochondrial superoxide dismutase with an unusual targeting sequence in Plasmodium falciparum. Mol Biochem Parasitol (2004) 0.85
Thermo- and mesostabilizing protein interactions identified by temperature-dependent statistical potentials. Biophys J (2010) 0.85
Modeling the temporal evolution of the Drosophila gene expression from DNA microarray time series. Phys Biol (2009) 0.84
Investigation of the redox behavior of ferroquine, a new antimalarial. Mol Pharm (2008) 0.84
Revisiting the correlation between proteins' thermoresistance and organisms' thermophilicity. Protein Eng Des Sel (2008) 0.84
Ligand efficiency driven design of new inhibitors of Mycobacterium tuberculosis transcriptional repressor EthR using fragment growing, merging, and linking approaches. J Med Chem (2014) 0.84
Cation-π, amino-π, π-π, and H-bond interactions stabilize antigen-antibody interfaces. Proteins (2014) 0.84
Database-derived potentials dependent on protein size for in silico folding and design. Biophys J (2004) 0.84
Mn/Fe superoxide dismutase interaction fingerprints and prediction of oligomerization and metal cofactor from sequence. Proteins (2008) 0.84
Robust non-linear differential equation models of gene expression evolution across Drosophila development. BMC Res Notes (2012) 0.83
Structural activation of the transcriptional repressor EthR from Mycobacterium tuberculosis by single amino acid change mimicking natural and synthetic ligands. Nucleic Acids Res (2011) 0.83
Dynamic modeling of gene expression in prokaryotes: application to glucose-lactose diauxie in Escherichia coli. Syst Synth Biol (2011) 0.80
Pin1: a therapeutic target in Alzheimer neurodegeneration. J Mol Neurosci (2002) 0.80
Gene expression model (in)validation by Fourier analysis. BMC Syst Biol (2010) 0.80
Sequence and conformation effects on ionization potential and charge distribution of homo-nucleobase stacks using M06-2X hybrid density functional theory calculations. J Biomol Struct Dyn (2013) 0.79
SNPs altering ammonium transport activity of human Rhesus factors characterized by a yeast-based functional assay. PLoS One (2013) 0.79
Design principles of a genetic alarm clock. PLoS One (2012) 0.79
Crystallization and preliminary X-ray analysis of a family 19 glycosyl hydrolase from Carica papaya latex. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.78
Ceramide, cerebroside and triterpenoid saponin from the bark of aerial roots of Ficus elastica (Moraceae). Phytochemistry (2012) 0.77
Evidence that thermodynamic stability of papaya glutamine cyclase is only marginal. Biopolymers (2002) 0.77
High-resolution structure of a papaya plant-defense barwin-like protein solved by in-house sulfur-SAD phasing. Acta Crystallogr D Biol Crystallogr (2013) 0.76
Chemical constituents from Glyphaea brevis and Monodora myristica: chemotaxonomic significance. Chem Biodivers (2013) 0.76
Protonation linked equilibria and apparent affinity constants: the thermodynamic profile of the alpha-chymotrypsin-proflavin interaction. Eur Biophys J (2007) 0.76
Conformations consistent with charge migration observed in DNA and RNA X-ray structures. J Biomol Struct Dyn (2011) 0.76
Discovery of novel N-phenylphenoxyacetamide derivatives as EthR inhibitors and ethionamide boosters by combining high-throughput screening and synthesis. J Med Chem (2012) 0.76
Molecular characterization of iron-containing superoxide dismutases in the heterotrophic dinoflagellate Crypthecodinium cohnii. Protist (2008) 0.76
Crystallization and preliminary X-ray diffraction studies of the glutaminyl cyclase from Carica papaya latex. Acta Crystallogr Sect F Struct Biol Cryst Commun (2004) 0.75
Prelude and Fugue, predicting local protein structure, early folding regions and structural weaknesses. Bioinformatics (2006) 0.75