Published in PLoS One on December 24, 2009
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci U S A (2012) 2.40
NGS technologies for analyzing germplasm diversity in genebanks. Brief Funct Genomics (2012) 1.76
Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. PLoS Genet (2014) 1.72
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics (2010) 1.62
Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing. PLoS One (2012) 1.57
Population structure in Japanese rice population. Breed Sci (2013) 1.42
Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness. Heredity (Edinb) (2011) 1.32
Genetic diversity and linkage disequilibrium in Chinese bread wheat (Triticum aestivum L.) revealed by SSR markers. PLoS One (2011) 1.31
Genetic association mapping identifies single nucleotide polymorphisms in genes that affect abscisic acid levels in maize floral tissues during drought. J Exp Bot (2010) 1.27
Joint linkage-linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maize. Proc Natl Acad Sci U S A (2010) 1.26
Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean. BMC Genomics (2014) 1.26
QTL mapping in three tropical maize populations reveals a set of constitutive and adaptive genomic regions for drought tolerance. Theor Appl Genet (2012) 1.20
Study of whole genome linkage disequilibrium in Nellore cattle. BMC Genomics (2013) 1.19
Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp. G3 (Bethesda) (2015) 1.18
Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize. PLoS One (2011) 1.13
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics (2014) 1.12
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects. BMC Bioinformatics (2011) 1.10
Identifying loci influencing 1,000-kernel weight in wheat by microsatellite screening for evidence of selection during breeding. PLoS One (2012) 1.08
Getting to the roots of it: Genetic and hormonal control of root architecture. Front Plant Sci (2013) 1.08
Genome-wide association study identifies candidate genes that affect plant height in Chinese elite maize (Zea mays L.) inbred lines. PLoS One (2011) 1.06
Genetic structure, linkage disequilibrium and signature of selection in Sorghum: lessons from physically anchored DArT markers. PLoS One (2012) 1.06
Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines. BMC Genomics (2012) 1.06
Sub-genomic selection patterns as a signature of breeding in the allopolyploid Brassica napus genome. BMC Genomics (2014) 1.05
Molecular characterization of diverse CIMMYT maize inbred lines from eastern and southern Africa using single nucleotide polymorphic markers. BMC Genomics (2012) 1.05
A transcriptome map of perennial ryegrass (Lolium perenne L.). BMC Genomics (2012) 1.03
Genetic structure, linkage disequilibrium and association mapping of Verticillium wilt resistance in elite cotton (Gossypium hirsutum L.) germplasm population. PLoS One (2014) 1.02
Extent of linkage disequilibrium in the domestic cat, Felis silvestris catus, and its breeds. PLoS One (2013) 1.01
Association mapping and the genomic consequences of selection in sunflower. PLoS Genet (2013) 0.98
Diverse approaches to achieving grain yield in wheat. Funct Integr Genomics (2011) 0.98
High-throughput SNP genotyping in Cucurbita pepo for map construction and quantitative trait loci mapping. BMC Genomics (2012) 0.98
The heterogeneous levels of linkage disequilibrium in white spruce genes and comparative analysis with other conifers. Heredity (Edinb) (2011) 0.96
An 11-bp insertion in Zea mays fatb reduces the palmitic acid content of fatty acids in maize grain. PLoS One (2011) 0.96
Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna. unguiculata ssp. sesquipedialis) germplasm: implications for domestication history and genome wide association studies. Heredity (Edinb) (2012) 0.93
Exploring the genetic characteristics of two recombinant inbred line populations via high-density SNP markers in maize. PLoS One (2012) 0.90
High-resolution genetic map for understanding the effect of genome-wide recombination rate on nucleotide diversity in watermelon. G3 (Bethesda) (2014) 0.90
Construction of core collections suitable for association mapping to optimize use of Mediterranean olive (Olea europaea L.) genetic resources. PLoS One (2013) 0.88
A connected set of genes associated with programmed cell death implicated in controlling the hypersensitive response in maize. Genetics (2012) 0.87
Development of maizeSNP3072, a high-throughput compatible SNP array, for DNA fingerprinting identification of Chinese maize varieties. Mol Breed (2015) 0.87
Association mapping and haplotype analysis of a 3.1-Mb genomic region involved in Fusarium head blight resistance on wheat chromosome 3BS. PLoS One (2012) 0.86
PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. PLoS One (2012) 0.86
A genome-wide association study identifies genomic regions for virulence in the non-model organism Heterobasidion annosum s.s. PLoS One (2013) 0.86
Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB. PLoS One (2014) 0.84
An Equation to Predict the Accuracy of Genomic Values by Combining Data from Multiple Traits, Populations, or Environments. Genetics (2015) 0.84
Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice. Sci Rep (2015) 0.83
Identification of Candidate Genes for Seed Glucosinolate Content Using Association Mapping in Brassica napus L. Genes (Basel) (2015) 0.83
Dissecting tocopherols content in maize (Zea mays L.), using two segregating populations and high-density single nucleotide polymorphism markers. BMC Plant Biol (2012) 0.83
Molecular characterization of CIMMYT maize inbred lines with genotyping-by-sequencing SNPs. Theor Appl Genet (2016) 0.83
Identification of Genetic Differentiation between Waxy and Common Maize by SNP Genotyping. PLoS One (2015) 0.82
Genome wide association study for drought, aflatoxin resistance, and important agronomic traits of maize hybrids in the sub-tropics. PLoS One (2015) 0.82
Unraveling the genetic architecture of subtropical maize (Zea mays L.) lines to assess their utility in breeding programs. BMC Genomics (2013) 0.82
Genetic architecture of rind penetrometer resistance in two maize recombinant inbred line populations. BMC Plant Biol (2014) 0.81
Comparison of Kompetitive Allele Specific PCR (KASP) and genotyping by sequencing (GBS) for quality control analysis in maize. BMC Genomics (2015) 0.81
Loci and candidate gene identification for resistance to Phytophthora sojae via association analysis in soybean [Glycine max (L.) Merr]. Mol Genet Genomics (2016) 0.81
Genetic diversity and association mapping in the Colombian Central Collection of Solanum tuberosum L. Andigenum group using SNPs markers. PLoS One (2017) 0.81
A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda. G3 (Bethesda) (2015) 0.81
Genomic consequences of selection and genome-wide association mapping in soybean. BMC Genomics (2015) 0.80
QTL Controlling Masculinization of Ear Tips in a Maize (Zea mays L.) Intraspecific Cross. G3 (Bethesda) (2011) 0.80
Polymorphism of TaSAP1-A1 and its association with agronomic traits in wheat. Planta (2013) 0.80
Genetic variation and association mapping for 12 agronomic traits in indica rice. BMC Genomics (2015) 0.80
Genome-Wide Association Study Identifies Candidate Genes for Starch Content Regulation in Maize Kernels. Front Plant Sci (2016) 0.79
Linkage Disequilibrium Estimation of Chinese Beef Simmental Cattle Using High-density SNP Panels. Asian-Australas J Anim Sci (2013) 0.79
Rapid genetic divergence in response to 15 years of simulated climate change. Glob Chang Biol (2015) 0.79
Genetic diversity among INERA maize inbred lines with single nucleotide polymorphism (SNP) markers and their relationship with CIMMYT, IITA, and temperate lines. BMC Genet (2014) 0.79
Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement. BMC Plant Biol (2015) 0.78
Leveraging non-targeted metabolite profiling via statistical genomics. PLoS One (2013) 0.78
Genome-wide association and genomic prediction of resistance to maize lethal necrosis disease in tropical maize germplasm. Theor Appl Genet (2015) 0.78
Effects of single nucleotide polymorphism marker density on degree of genetic variance explained and genomic evaluation for carcass traits in Japanese Black beef cattle. BMC Genet (2014) 0.78
Construction of a genetic map based on high-throughput SNP genotyping and genetic mapping of a TuMV resistance locus in Brassica rapa. Mol Genet Genomics (2013) 0.77
Joint-linkage mapping and GWAS reveal extensive genetic loci that regulate male inflorescence size in maize. Plant Biotechnol J (2016) 0.77
Genetic diversity analysis of abiotic stress response gene TaSnRK2.7-A in common wheat. Genetica (2011) 0.77
Development of a maize 55 K SNP array with improved genome coverage for molecular breeding. Mol Breed (2017) 0.76
Geographical distribution of genetic diversity in Secale landrace and wild accessions. BMC Plant Biol (2016) 0.76
Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato. Theor Appl Genet (2016) 0.76
Large-scale evaluation of maize germplasm for low-phosphorus tolerance. PLoS One (2015) 0.76
Genome-wide view of genetic diversity reveals paths of selection and cultivar differentiation in peach domestication. DNA Res (2016) 0.76
Genomic Regions Associated with Root Traits under Drought Stress in Tropical Maize (Zea mays L.). PLoS One (2016) 0.76
Genome-Wide Association Study and QTL Mapping Reveal Genomic Loci Associated with Fusarium Ear Rot Resistance in Tropical Maize Germplasm. G3 (Bethesda) (2016) 0.76
Genetic dissection of maize seedling root system architecture traits using an ultra-high density bin-map and a recombinant inbred line population. J Integr Plant Biol (2016) 0.75
Fast diffusion of domesticated maize to temperate zones. Sci Rep (2017) 0.75
Genome-wide association mapping and Identification of candidate genes for fatty acid composition in Brassica napus L. using SNP markers. BMC Genomics (2017) 0.75
Exploiting Wild Relatives for Genomics-assisted Breeding of Perennial Crops. Front Plant Sci (2017) 0.75
Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1. Plant Physiol (2016) 0.75
Using a Candidate Gene-Based Genetic Linkage Map to Identify QTL for Winter Survival in Perennial Ryegrass. PLoS One (2016) 0.75
Exploring Identity-By-Descent Segments and Putative Functions Using Different Foundation Parents in Maize. PLoS One (2016) 0.75
The Identification of Two Head Smut Resistance-Related QTL in Maize by the Joint Approach of Linkage Mapping and Association Analysis. PLoS One (2015) 0.75
Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers. BMC Genomics (2016) 0.75
Genome-Wide SNP Markers Based on SLAF-Seq Uncover Breeding Traces in Rapeseed (Brassica napus L.). Front Plant Sci (2017) 0.75
Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map. PLoS One (2017) 0.75
Evolution of meiotic recombination genes in maize and teosinte. BMC Genomics (2017) 0.75
Genetic variation and population structure of maize inbred lines adapted to the mid-altitude sub-humid maize agro-ecology of Ethiopia using single nucleotide polymorphic (SNP) markers. BMC Genomics (2017) 0.75
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Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics (2003) 3.57
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SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genet (2002) 3.23
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Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science (2008) 3.06
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The lowdown on linkage disequilibrium. Plant Cell (2003) 1.92
Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. PLoS One (2007) 1.80
Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10. Proc Natl Acad Sci U S A (2009) 1.55
Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize. Mol Genet Genomics (2007) 1.50
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Use of SSRs for establishing heterotic groups in subtropical maize. Theor Appl Genet (2003) 1.28
Tropical maize germplasm: what can we say about its genetic diversity in the light of molecular markers? Theor Appl Genet (2005) 1.08
Recovery of exotic alleles in semiexotic maize inbreds derived from crosses between Latin American accessions and a temperate line. Theor Appl Genet (2004) 0.81
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet (2005) 20.97
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19
TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics (2007) 14.95
The genetic architecture of maize flowering time. Science (2009) 9.27
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
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A first-generation haplotype map of maize. Science (2009) 6.82
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Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
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Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol (2011) 3.51
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat Genet (2011) 3.51
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res (2006) 3.47
Genetic association mapping and genome organization of maize. Curr Opin Biotechnol (2006) 3.34
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
Genetic diversity and selection in the maize starch pathway. Proc Natl Acad Sci U S A (2002) 3.20
Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science (2008) 3.06
Genetic structure and domestication history of the grape. Proc Natl Acad Sci U S A (2011) 2.89
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Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science (2005) 2.55
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell (2005) 2.50
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci U S A (2012) 2.40
Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Proc Natl Acad Sci U S A (2011) 2.38
Genetic diversity and population structure of teosinte. Genetics (2005) 2.31
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Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain. Nat Genet (2010) 2.25
Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nat Genet (2012) 2.25
A genome-wide characterization of microRNA genes in maize. PLoS Genet (2009) 2.23
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Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. PLoS One (2007) 1.80
Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization. Plant Physiol (2002) 1.76
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Linkage mapping of domestication loci in a large maize teosinte backcross resource. Genetics (2007) 1.66
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Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms. Theor Appl Genet (2009) 1.57
Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10. Proc Natl Acad Sci U S A (2009) 1.55
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Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor Appl Genet (2011) 1.51
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proc Natl Acad Sci U S A (2012) 1.49
Heterosis is prevalent for multiple traits in diverse maize germplasm. PLoS One (2009) 1.45
The genetic architecture of maize height. Genetics (2014) 1.41
Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics (2010) 1.41
Joint QTL linkage mapping for multiple-cross mating design sharing one common parent. PLoS One (2011) 1.37
Theileria parva candidate vaccine antigens recognized by immune bovine cytotoxic T lymphocytes. Proc Natl Acad Sci U S A (2006) 1.36
Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Res (2011) 1.31
Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping. PLoS Genet (2013) 1.30
Genetic association mapping identifies single nucleotide polymorphisms in genes that affect abscisic acid levels in maize floral tissues during drought. J Exp Bot (2010) 1.27
Joint linkage-linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maize. Proc Natl Acad Sci U S A (2010) 1.26
Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res (2012) 1.26
Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiol (2003) 1.25
Can genomics boost productivity of orphan crops? Nat Biotechnol (2012) 1.24
Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection. Theor Appl Genet (2010) 1.23
Using natural allelic diversity to evaluate gene function. Methods Mol Biol (2003) 1.22
Meta-analyses of QTL for grain yield and anthesis silking interval in 18 maize populations evaluated under water-stressed and well-watered environments. BMC Genomics (2013) 1.22
A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps. BMC Genomics (2007) 1.21
Genetic control of photoperiod sensitivity in maize revealed by joint multiple population analysis. Genetics (2009) 1.20
A modern ampelography: a genetic basis for leaf shape and venation patterning in grape. Plant Physiol (2013) 1.19
A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms. Mol Plant (2012) 1.19
The genetic architecture of complex traits in teosinte (Zea mays ssp. parviglumis): new evidence from association mapping. Genetics (2008) 1.16
Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize. PLoS One (2011) 1.13
Association and linkage analysis of aluminum tolerance genes in maize. PLoS One (2010) 1.12
QTL mapping of grain length in rice (Oryza sativa L.) using chromosome segment substitution lines. Genet Res (2006) 1.10
Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition. Genetics (2005) 1.10
Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. G3 (Bethesda) (2013) 1.10
Natural variation in maize aphid resistance is associated with 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one glucoside methyltransferase activity. Plant Cell (2013) 1.10