Published in Cold Spring Harb Protoc on April 01, 2009
Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science (2006) 11.20
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet (2008) 4.91
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc Natl Acad Sci U S A (2002) 3.52
gamma-H2AX dephosphorylation by protein phosphatase 2A facilitates DNA double-strand break repair. Mol Cell (2005) 3.24
Molecular biology. Chromatin higher order folding--wrapping up transcription. Science (2002) 2.71
A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme. Science (2013) 2.67
The SANT domain: a unique histone-tail-binding module? Nat Rev Mol Cell Biol (2004) 2.63
Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol Cell (2002) 2.33
The Ino80 chromatin-remodeling enzyme regulates replisome function and stability. Nat Struct Mol Biol (2008) 2.30
Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity. Cell (2011) 2.26
DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell (2006) 2.25
Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast. Mol Cell (2003) 2.17
Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem (2003) 2.15
Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery. Genes Dev (2009) 2.13
Interplay between Ino80 and Swr1 chromatin remodeling enzymes regulates cell cycle checkpoint adaptation in response to DNA damage. Genes Dev (2006) 2.05
ATP-dependent chromatin remodeling. Curr Top Dev Biol (2005) 2.02
A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation. Genes Dev (2005) 1.87
Structural analysis of the yeast SWI/SNF chromatin remodeling complex. Nat Struct Biol (2003) 1.86
Chromatin and the genome integrity network. Nat Rev Genet (2013) 1.72
Phosphorylation of linker histones regulates ATP-dependent chromatin remodeling enzymes. Nat Struct Biol (2002) 1.71
Chromatin immunoprecipitation (ChIP). Cold Spring Harb Protoc (2009) 1.69
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev (2007) 1.61
Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nat Struct Mol Biol (2006) 1.58
Architecture of the SWI/SNF-nucleosome complex. Mol Cell Biol (2008) 1.58
The SIN domain of the histone octamer is essential for intramolecular folding of nucleosomal arrays. Nat Struct Biol (2002) 1.55
DNA instructed displacement of histones H2A and H2B at an inducible promoter. Mol Cell (2004) 1.53
A native peptide ligation strategy for deciphering nucleosomal histone modifications. J Biol Chem (2003) 1.53
Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae. Curr Biol (2005) 1.41
Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement. Nat Struct Mol Biol (2007) 1.35
ATP-dependent and ATP-independent roles for the Rad54 chromatin remodeling enzyme during recombinational repair of a DNA double strand break. J Biol Chem (2005) 1.31
Chromatin and transcription: histones continue to make their marks. Nat Cell Biol (2003) 1.25
A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling. Mol Cell Biol (2005) 1.24
Creating designer histones by native chemical ligation. Methods Enzymol (2004) 1.21
Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell (2009) 1.21
Nucleosome dynamics regulates DNA processing. Nat Struct Mol Biol (2013) 1.19
Switching on chromatin: mechanistic role of histone H4-K16 acetylation. Cell Cycle (2006) 1.12
The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J (2011) 1.09
Heterochromatin assembly: a new twist on an old model. Chromosome Res (2006) 1.08
Modulating acetyl-CoA binding in the GCN5 family of histone acetyltransferases. J Biol Chem (2002) 1.08
DNA repair choice defines a common pathway for recruitment of chromatin regulators. Nat Commun (2013) 1.08
The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing. Mol Cell Biol (2006) 1.06
Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. J Biol Chem (2003) 1.06
Chromatin dynamics during repair of chromosomal DNA double-strand breaks. Epigenomics (2009) 1.05
Dominant role for signal transduction in the transcriptional memory of yeast GAL genes. Mol Cell Biol (2010) 1.03
A Rad51 presynaptic filament is sufficient to capture nucleosomal homology during recombinational repair of a DNA double-strand break. Mol Cell (2008) 1.00
Role of chromatin states in transcriptional memory. Biochim Biophys Acta (2009) 0.94
Transcription. Unlocking the gates to gene expression. Science (2002) 0.93
Dignam and Roeder nuclear extract preparation. Cold Spring Harb Protoc (2009) 0.93
Opening the DNA repair toolbox: localization of DNA double strand breaks to the nuclear periphery. Cell Cycle (2010) 0.92
Experimental strategies for the identification of DNA-binding proteins. Cold Spring Harb Protoc (2012) 0.91
Effects of HMGN1 on chromatin structure and SWI/SNF-mediated chromatin remodeling. J Biol Chem (2005) 0.90
Polyamine analogues: potent inducers of nucleosomal array oligomerization and inhibitors of yeast cell growth. Biochem J (2007) 0.84
SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes. Mol Cell Biol (2011) 0.82
Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. Mol Biol Cell (2012) 0.82
The RNase protection assay. Cold Spring Harb Protoc (2013) 0.81
Confirming the functional importance of a protein-DNA interaction. Cold Spring Harb Protoc (2012) 0.81
Electrophoretic mobility-shift assays. Cold Spring Harb Protoc (2013) 0.79
PCR-mediated site-directed mutagenesis. Cold Spring Harb Protoc (2013) 0.79
G-less cassette in vitro transcription using HeLa cell nuclear extracts. Cold Spring Harb Protoc (2010) 0.79
Coupling tandem affinity purification and quantitative tyrosine iodination to determine subunit stoichiometry of protein complexes. Methods (2003) 0.78
Reconstitution of nucleosomal arrays using recombinant Drosophila ACF and NAP1. Cold Spring Harb Protoc (2009) 0.78
In vivo DNase I, MNase, and restriction enzyme footprinting via ligation-mediated polymerase chain reaction (LM-PCR). Cold Spring Harb Protoc (2009) 0.78
The primer extension assay. Cold Spring Harb Protoc (2013) 0.78
In vitro transcription using HeLa cell extracts and primer extension. Cold Spring Harb Protoc (2009) 0.78
Releasing the brakes on a chromatin-remodeling enzyme. Nat Struct Mol Biol (2013) 0.77
Experimental strategies for cloning or identifying genes encoding DNA-binding proteins. Cold Spring Harb Protoc (2012) 0.77
DNase I footprinting. Cold Spring Harb Protoc (2013) 0.77
Chromatin dynamics: flipping the switch on a chromatin remodeling machine. Cell Cycle (2013) 0.77
Identifying cis-acting DNA elements within a control region. Cold Spring Harb Protoc (2012) 0.77
Magnesium-agarose electrophoretic mobility shift assay (EMSA) of transcription factor IID binding to DNA. Cold Spring Harb Protoc (2010) 0.76
Chromatin: a ubiquitin crowbar opens chromatin. Nat Chem Biol (2011) 0.75
Potassium permanganate probing of Pol II open complexes. Cold Spring Harb Protoc (2010) 0.75
Purification of mediator from HeLa cell lines expressing a flag-tagged mediator subunit. Cold Spring Harb Protoc (2010) 0.75
Purification of recombinant Drosophila ACF. Cold Spring Harb Protoc (2009) 0.75
In vivo dimethyl sulfate (DMS) footprinting via ligation-mediated polymerase chain reaction (LM-PCR). Cold Spring Harb Protoc (2009) 0.75
Protein complex binding to promoter DNA: immobilized template assay. Cold Spring Harb Protoc (2010) 0.75
Preparation of (32)P-end-labeled DNA fragments for performing DNA-binding experiments. Cold Spring Harb Protoc (2013) 0.75
Profound challenges do remain in our understanding of the mechanisms of gene regulation. Biochim Biophys Acta (2007) 0.75
Purification of epitope-tagged transcription factor IID. Cold Spring Harb Protoc (2010) 0.75