Published in PLoS Genet on July 25, 2008
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Coordination of KSHV latent and lytic gene control by CTCF-cohesin mediated chromosome conformation. PLoS Pathog (2011) 1.16
Genomic profiling of HMGN1 reveals an association with chromatin at regulatory regions. Mol Cell Biol (2010) 1.12
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res (2013) 1.12
The evolutionary differentiation of two histone H2A.Z variants in chordates (H2A.Z-1 and H2A.Z-2) is mediated by a stepwise mutation process that affects three amino acid residues. BMC Evol Biol (2009) 1.12
BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites. PLoS Biol (2008) 1.11
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The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization. Epigenetics Chromatin (2011) 0.98
Histone chaperones, histone acetylation, and the fluidity of the chromogenome. J Cell Physiol (2010) 0.97
The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner. Epigenetics Chromatin (2012) 0.97
Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes. Genome Biol (2013) 0.93
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Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning. Epigenetics Chromatin (2011) 0.91
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CTCF regulates Kaposi's sarcoma-associated herpesvirus latency transcription by nucleosome displacement and RNA polymerase programming. J Virol (2012) 0.90
Altered nucleosome positioning at the transcription start site and deficient transcriptional initiation in Friedreich ataxia. J Biol Chem (2014) 0.90
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Architectural proteins CTCF and cohesin have distinct roles in modulating the higher order structure and expression of the CFTR locus. Nucleic Acids Res (2014) 0.88
CTCF mediates the cell-type specific spatial organization of the Kcnq5 locus and the local gene regulation. PLoS One (2012) 0.88
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Learning a weighted sequence model of the nucleosome core and linker yields more accurate predictions in Saccharomyces cerevisiae and Homo sapiens. PLoS Comput Biol (2010) 0.86
Open chromatin profiling in mice livers reveals unique chromatin variations induced by high fat diet. J Biol Chem (2014) 0.85
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Interrogating genomic and epigenomic data to understand prostate cancer. Biochim Biophys Acta (2012) 0.85
An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape. Sci Rep (2015) 0.85
S-phase progression in mammalian cells: modelling the influence of nuclear organization. Chromosome Res (2010) 0.85
A dynamic CTCF chromatin binding landscape promotes DNA hydroxymethylation and transcriptional induction of adipocyte differentiation. Nucleic Acids Res (2014) 0.84
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Analysis of neonatal brain lacking ATRX or MeCP2 reveals changes in nucleosome density, CTCF binding and chromatin looping. Nucleic Acids Res (2014) 0.83
Prediction of nucleosome positioning based on transcription factor binding sites. PLoS One (2010) 0.83
Digging deep into "dirty" drugs - modulation of the methylation machinery. Drug Metab Rev (2015) 0.83
Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice. PLoS Genet (2014) 0.83
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Transcription factor BORIS (Brother of the Regulator of Imprinted Sites) directly induces expression of a cancer-testis antigen, TSP50, through regulated binding of BORIS to the promoter. J Biol Chem (2011) 0.82
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A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet (2007) 12.21
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Heterotypic piRNA Ping-Pong requires qin, a protein with both E3 ligase and Tudor domains. Mol Cell (2011) 1.79
Adaptation to P element transposon invasion in Drosophila melanogaster. Cell (2011) 1.76
Chromatin and the genome integrity network. Nat Rev Genet (2013) 1.72
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Dicer partner proteins tune the length of mature miRNAs in flies and mammals. Cell (2012) 1.57
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UAP56 couples piRNA clusters to the perinuclear transposon silencing machinery. Cell (2012) 1.53
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