Published in Cold Spring Harb Protoc on July 01, 2012
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Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions. Cell (2012) 4.10
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Cross-interference of RLR and TLR signaling pathways modulates antibacterial T cell responses. Nat Immunol (2012) 2.72
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Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells. Genes Dev (2009) 2.70
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Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol Cell (2002) 2.33
The Ino80 chromatin-remodeling enzyme regulates replisome function and stability. Nat Struct Mol Biol (2008) 2.30
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DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell (2006) 2.25
Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast. Mol Cell (2003) 2.17
Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem (2003) 2.15
Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery. Genes Dev (2009) 2.13
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Interplay between Ino80 and Swr1 chromatin remodeling enzymes regulates cell cycle checkpoint adaptation in response to DNA damage. Genes Dev (2006) 2.05
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Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros. Nat Immunol (2013) 1.88
A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation. Genes Dev (2005) 1.87
Structural analysis of the yeast SWI/SNF chromatin remodeling complex. Nat Struct Biol (2003) 1.86
Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells. Proc Natl Acad Sci U S A (2007) 1.81
Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA. Mol Cell (2012) 1.79
Predominant interaction of both Ikaros and Helios with the NuRD complex in immature thymocytes. J Biol Chem (2007) 1.76
Principles of dimer-specific gene regulation revealed by a comprehensive characterization of NF-κB family DNA binding. Nat Immunol (2011) 1.72
Chromatin and the genome integrity network. Nat Rev Genet (2013) 1.72
Phosphorylation of linker histones regulates ATP-dependent chromatin remodeling enzymes. Nat Struct Biol (2002) 1.71
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Class-specific regulation of pro-inflammatory genes by MyD88 pathways and IkappaBzeta. J Biol Chem (2008) 1.62
Interleukin-10 inhibits interleukin-12 p40 gene transcription by targeting a late event in the activation pathway. Mol Cell Biol (2004) 1.62
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev (2007) 1.61
Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nat Struct Mol Biol (2006) 1.58
C/EBPbeta regulation in lipopolysaccharide-stimulated macrophages. Mol Cell Biol (2003) 1.58
Architecture of the SWI/SNF-nucleosome complex. Mol Cell Biol (2008) 1.58
The SIN domain of the histone octamer is essential for intramolecular folding of nucleosomal arrays. Nat Struct Biol (2002) 1.55
DNA instructed displacement of histones H2A and H2B at an inducible promoter. Mol Cell (2004) 1.53
A common mechanism for mitotic inactivation of C2H2 zinc finger DNA-binding domains. Genes Dev (2002) 1.53
A native peptide ligation strategy for deciphering nucleosomal histone modifications. J Biol Chem (2003) 1.53
Automethylation of G9a and its implication in wider substrate specificity and HP1 binding. Nucleic Acids Res (2007) 1.52
Widespread failure of hematolymphoid differentiation caused by a recessive niche-filling allele of the Ikaros transcription factor. Immunity (2003) 1.51
Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation. Blood (2013) 1.51
Restraint of inflammatory signaling by interdependent strata of negative regulatory pathways. Nat Immunol (2012) 1.49
A c-Rel subdomain responsible for enhanced DNA-binding affinity and selective gene activation. Genes Dev (2005) 1.45
Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae. Curr Biol (2005) 1.41
CDK9 regulates AR promoter selectivity and cell growth through serine 81 phosphorylation. Mol Endocrinol (2010) 1.35
Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement. Nat Struct Mol Biol (2007) 1.35
ATP-dependent and ATP-independent roles for the Rad54 chromatin remodeling enzyme during recombinational repair of a DNA double strand break. J Biol Chem (2005) 1.31
An inducible enhancer required for Il12b promoter activity in an insulated chromatin environment. Mol Cell Biol (2007) 1.26
NFIL3 is a regulator of IL-12 p40 in macrophages and mucosal immunity. J Immunol (2011) 1.25
Chromatin and transcription: histones continue to make their marks. Nat Cell Biol (2003) 1.25
A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling. Mol Cell Biol (2005) 1.24
Creating designer histones by native chemical ligation. Methods Enzymol (2004) 1.21
Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell (2009) 1.21
Selectivity of the NF-{kappa}B response. Cold Spring Harb Perspect Biol (2009) 1.20
Nucleosome dynamics regulates DNA processing. Nat Struct Mol Biol (2013) 1.19
Common interaction surfaces of the toll-like receptor 4 cytoplasmic domain stimulate multiple nuclear targets. Mol Cell Biol (2003) 1.16
Control of glycolysis in contracting skeletal muscle. II. Turning it off. Am J Physiol Endocrinol Metab (2002) 1.14
Switching on chromatin: mechanistic role of histone H4-K16 acetylation. Cell Cycle (2006) 1.12
The effect of whey isolate and resistance training on strength, body composition, and plasma glutamine. Int J Sport Nutr Exerc Metab (2006) 1.11
Selective dimerization of a C2H2 zinc finger subfamily. Mol Cell (2003) 1.09
The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J (2011) 1.09
Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression. RNA (2013) 1.08
Immune inhibitory ligand CD200 induction by TLRs and NLRs limits macrophage activation to protect the host from meningococcal septicemia. Cell Host Microbe (2010) 1.08
Modulating acetyl-CoA binding in the GCN5 family of histone acetyltransferases. J Biol Chem (2002) 1.08
Heterochromatin assembly: a new twist on an old model. Chromosome Res (2006) 1.08
DNA repair choice defines a common pathway for recruitment of chromatin regulators. Nat Commun (2013) 1.08
Moderate-intensity resistance exercise training in patients with chronic heart failure improves strength, endurance, heart rate variability, and forearm blood flow. J Card Fail (2004) 1.06
The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing. Mol Cell Biol (2006) 1.06
Evaluation of the long-term reconstituting subset of hematopoietic stem cells with CD150. Stem Cells (2009) 1.06
Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. J Biol Chem (2003) 1.06
Chromatin dynamics during repair of chromosomal DNA double-strand breaks. Epigenomics (2009) 1.05
Dominant role for signal transduction in the transcriptional memory of yeast GAL genes. Mol Cell Biol (2010) 1.03
Effects of whey isolate, creatine, and resistance training on muscle hypertrophy. Med Sci Sports Exerc (2007) 1.03
Fatigue depresses maximal in vitro skeletal muscle Na(+)-K(+)-ATPase activity in untrained and trained individuals. J Appl Physiol (1985) (2002) 1.03
Prolonged exercise to fatigue in humans impairs skeletal muscle Na+-K+-ATPase activity, sarcoplasmic reticulum Ca2+ release, and Ca2+ uptake. J Appl Physiol (1985) (2004) 1.02
Circuit resistance training in chronic heart failure improves skeletal muscle mitochondrial ATP production rate--a randomized controlled trial. J Card Fail (2007) 1.01
Control of glycolysis in contracting skeletal muscle. I. Turning it on. Am J Physiol Endocrinol Metab (2002) 1.01
Transgenic expression of Helios in B lineage cells alters B cell properties and promotes lymphomagenesis. J Immunol (2005) 1.01
A Rad51 presynaptic filament is sufficient to capture nucleosomal homology during recombinational repair of a DNA double-strand break. Mol Cell (2008) 1.00
A distal enhancer in Il12b is the target of transcriptional repression by the STAT3 pathway and requires the basic leucine zipper (B-ZIP) protein NFIL3. J Biol Chem (2011) 0.98
Self-renewal of the long-term reconstituting subset of hematopoietic stem cells is regulated by Ikaros. Stem Cells (2009) 0.98
Upstream of Ikaros. Trends Immunol (2003) 0.96
Micrococcal Nuclease-Southern Blot Assay: I. MNase and Restriction Digestions. CSH Protoc (2007) 0.95
Assembly of silent chromatin during thymocyte development. Semin Immunol (2005) 0.94
Role of chromatin states in transcriptional memory. Biochim Biophys Acta (2009) 0.94
Transcription. Unlocking the gates to gene expression. Science (2002) 0.93
Dignam and Roeder nuclear extract preparation. Cold Spring Harb Protoc (2009) 0.93