Published in J Biol Chem on January 14, 2005
Homologous recombination in DNA repair and DNA damage tolerance. Cell Res (2008) 3.86
Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. Genes Dev (2005) 2.47
Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery. Genes Dev (2009) 2.13
Rad54: the Swiss Army knife of homologous recombination? Nucleic Acids Res (2006) 2.09
Real-time analysis of double-strand DNA break repair by homologous recombination. Proc Natl Acad Sci U S A (2011) 1.80
ATP-dependent chromatin remodeling factors and DNA damage repair. Mutat Res (2007) 1.78
Human Rad51 filaments on double- and single-stranded DNA: correlating regular and irregular forms with recombination function. Nucleic Acids Res (2005) 1.71
Differential contributions of mammalian Rad54 paralogs to recombination, DNA damage repair, and meiosis. Mol Cell Biol (2006) 1.63
Rad51 and Rad54 ATPase activities are both required to modulate Rad51-dsDNA filament dynamics. Nucleic Acids Res (2007) 1.21
RAD54 controls access to the invading 3'-OH end after RAD51-mediated DNA strand invasion in homologous recombination in Saccharomyces cerevisiae. Nucleic Acids Res (2008) 1.21
Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell (2009) 1.21
Rad54, the motor of homologous recombination. DNA Repair (Amst) (2010) 1.18
Reconstitution of DNA repair synthesis in vitro and the role of polymerase and helicase activities. DNA Repair (Amst) (2011) 1.17
Real-time measurements of the nucleation, growth and dissociation of single Rad51-DNA nucleoprotein filaments. Nucleic Acids Res (2007) 1.14
Functions of the Snf2/Swi2 family Rad54 motor protein in homologous recombination. Biochim Biophys Acta (2011) 1.13
DNA repair choice defines a common pathway for recruitment of chromatin regulators. Nat Commun (2013) 1.08
The dynamics of homologous pairing during mating type interconversion in budding yeast. PLoS Genet (2006) 1.07
Chromatin dynamics during repair of chromosomal DNA double-strand breaks. Epigenomics (2009) 1.05
ATP-dependent and independent functions of Rad54 in genome maintenance. J Cell Biol (2011) 1.02
A Rad51 presynaptic filament is sufficient to capture nucleosomal homology during recombinational repair of a DNA double-strand break. Mol Cell (2008) 1.00
Recombination protein Tid1p controls resolution of cohesin-dependent linkages in meiosis in Saccharomyces cerevisiae. J Cell Biol (2005) 0.97
The rad51-K191R ATPase-defective mutant is impaired for presynaptic filament formation. Mol Cell Biol (2006) 0.95
Presynaptic filament dynamics in homologous recombination and DNA repair. Crit Rev Biochem Mol Biol (2011) 0.93
Rad54 functions as a heteroduplex DNA pump modulated by its DNA substrates and Rad51 during D loop formation. Mol Cell (2014) 0.92
Synergistic action of the Saccharomyces cerevisiae homologous recombination factors Rad54 and Rad51 in chromatin remodeling. DNA Repair (Amst) (2007) 0.91
Biochemistry of eukaryotic homologous recombination. Top Curr Genet (2007) 0.91
Rad51 polymerization reveals a new chromatin remodeling mechanism. PLoS One (2008) 0.89
Stimulation of Dmc1-mediated DNA strand exchange by the human Rad54B protein. Nucleic Acids Res (2006) 0.89
Time to bloom. Genome Integr (2010) 0.89
Biochemistry of Meiotic Recombination: Formation, Processing, and Resolution of Recombination Intermediates. Genome Dyn Stab (2008) 0.83
Epistasis analysis between homologous recombination genes in Saccharomyces cerevisiae identifies multiple repair pathways for Sgs1, Mus81-Mms4 and RNase H2. Mutat Res (2011) 0.83
An archaeal Rad54 protein remodels DNA and stimulates DNA strand exchange by RadA. Nucleic Acids Res (2009) 0.82
Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins. Nucleic Acids Res (2008) 0.82
Biochemical analysis of the N-terminal domain of human RAD54B. Nucleic Acids Res (2008) 0.81
Homology Requirements and Competition between Gene Conversion and Break-Induced Replication during Double-Strand Break Repair. Mol Cell (2016) 0.78
DNA Sequence Alignment during Homologous Recombination. J Biol Chem (2016) 0.78
The PCNA interaction protein box sequence in Rad54 is an integral part of its ATPase domain and is required for efficient DNA repair and recombination. PLoS One (2013) 0.78
Analysis of the activities of RAD54, a SWI2/SNF2 protein, using a specific small-molecule inhibitor. J Biol Chem (2013) 0.77
A conserved sequence extending motif III of the motor domain in the Snf2-family DNA translocase Rad54 is critical for ATPase activity. PLoS One (2013) 0.77
Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science (2006) 11.20
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet (2008) 4.91
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc Natl Acad Sci U S A (2002) 3.52
gamma-H2AX dephosphorylation by protein phosphatase 2A facilitates DNA double-strand break repair. Mol Cell (2005) 3.24
Molecular biology. Chromatin higher order folding--wrapping up transcription. Science (2002) 2.71
A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme. Science (2013) 2.67
The SANT domain: a unique histone-tail-binding module? Nat Rev Mol Cell Biol (2004) 2.63
Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol Cell (2002) 2.33
The Ino80 chromatin-remodeling enzyme regulates replisome function and stability. Nat Struct Mol Biol (2008) 2.30
Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity. Cell (2011) 2.26
DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell (2006) 2.25
Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast. Mol Cell (2003) 2.17
Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem (2003) 2.15
Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery. Genes Dev (2009) 2.13
Interplay between Ino80 and Swr1 chromatin remodeling enzymes regulates cell cycle checkpoint adaptation in response to DNA damage. Genes Dev (2006) 2.05
ATP-dependent chromatin remodeling. Curr Top Dev Biol (2005) 2.02
A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation. Genes Dev (2005) 1.87
Structural analysis of the yeast SWI/SNF chromatin remodeling complex. Nat Struct Biol (2003) 1.86
Chromatin and the genome integrity network. Nat Rev Genet (2013) 1.72
Phosphorylation of linker histones regulates ATP-dependent chromatin remodeling enzymes. Nat Struct Biol (2002) 1.71
Chromatin immunoprecipitation (ChIP). Cold Spring Harb Protoc (2009) 1.69
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev (2007) 1.61
Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nat Struct Mol Biol (2006) 1.58
Architecture of the SWI/SNF-nucleosome complex. Mol Cell Biol (2008) 1.58
The SIN domain of the histone octamer is essential for intramolecular folding of nucleosomal arrays. Nat Struct Biol (2002) 1.55
DNA instructed displacement of histones H2A and H2B at an inducible promoter. Mol Cell (2004) 1.53
A native peptide ligation strategy for deciphering nucleosomal histone modifications. J Biol Chem (2003) 1.53
Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae. Curr Biol (2005) 1.41
Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement. Nat Struct Mol Biol (2007) 1.35
Chromatin and transcription: histones continue to make their marks. Nat Cell Biol (2003) 1.25
A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling. Mol Cell Biol (2005) 1.24
Creating designer histones by native chemical ligation. Methods Enzymol (2004) 1.21
Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell (2009) 1.21
Nucleosome dynamics regulates DNA processing. Nat Struct Mol Biol (2013) 1.19
Switching on chromatin: mechanistic role of histone H4-K16 acetylation. Cell Cycle (2006) 1.12
The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J (2011) 1.09
Modulating acetyl-CoA binding in the GCN5 family of histone acetyltransferases. J Biol Chem (2002) 1.08
Heterochromatin assembly: a new twist on an old model. Chromosome Res (2006) 1.08
DNA repair choice defines a common pathway for recruitment of chromatin regulators. Nat Commun (2013) 1.08
The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing. Mol Cell Biol (2006) 1.06
Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. J Biol Chem (2003) 1.06
Chromatin dynamics during repair of chromosomal DNA double-strand breaks. Epigenomics (2009) 1.05
Dominant role for signal transduction in the transcriptional memory of yeast GAL genes. Mol Cell Biol (2010) 1.03
A Rad51 presynaptic filament is sufficient to capture nucleosomal homology during recombinational repair of a DNA double-strand break. Mol Cell (2008) 1.00
Role of chromatin states in transcriptional memory. Biochim Biophys Acta (2009) 0.94
Transcription. Unlocking the gates to gene expression. Science (2002) 0.93
Dignam and Roeder nuclear extract preparation. Cold Spring Harb Protoc (2009) 0.93
Opening the DNA repair toolbox: localization of DNA double strand breaks to the nuclear periphery. Cell Cycle (2010) 0.92
Experimental strategies for the identification of DNA-binding proteins. Cold Spring Harb Protoc (2012) 0.91
Effects of HMGN1 on chromatin structure and SWI/SNF-mediated chromatin remodeling. J Biol Chem (2005) 0.90
Polyamine analogues: potent inducers of nucleosomal array oligomerization and inhibitors of yeast cell growth. Biochem J (2007) 0.84
SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes. Mol Cell Biol (2011) 0.82
Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. Mol Biol Cell (2012) 0.82
Confirming the functional importance of a protein-DNA interaction. Cold Spring Harb Protoc (2012) 0.81
The RNase protection assay. Cold Spring Harb Protoc (2013) 0.81
PCR-mediated site-directed mutagenesis. Cold Spring Harb Protoc (2013) 0.79
Electrophoretic mobility-shift assays. Cold Spring Harb Protoc (2013) 0.79
G-less cassette in vitro transcription using HeLa cell nuclear extracts. Cold Spring Harb Protoc (2010) 0.79
The primer extension assay. Cold Spring Harb Protoc (2013) 0.78
In vitro transcription using HeLa cell extracts and primer extension. Cold Spring Harb Protoc (2009) 0.78
Reconstitution of nucleosomal arrays using recombinant Drosophila ACF and NAP1. Cold Spring Harb Protoc (2009) 0.78
Coupling tandem affinity purification and quantitative tyrosine iodination to determine subunit stoichiometry of protein complexes. Methods (2003) 0.78
In vivo DNase I, MNase, and restriction enzyme footprinting via ligation-mediated polymerase chain reaction (LM-PCR). Cold Spring Harb Protoc (2009) 0.78
Releasing the brakes on a chromatin-remodeling enzyme. Nat Struct Mol Biol (2013) 0.77
Identifying cis-acting DNA elements within a control region. Cold Spring Harb Protoc (2012) 0.77
Chromatin dynamics: flipping the switch on a chromatin remodeling machine. Cell Cycle (2013) 0.77
DNase I footprinting. Cold Spring Harb Protoc (2013) 0.77
Experimental strategies for cloning or identifying genes encoding DNA-binding proteins. Cold Spring Harb Protoc (2012) 0.77
Magnesium-agarose electrophoretic mobility shift assay (EMSA) of transcription factor IID binding to DNA. Cold Spring Harb Protoc (2010) 0.76
Chromatin: a ubiquitin crowbar opens chromatin. Nat Chem Biol (2011) 0.75
Potassium permanganate probing of Pol II open complexes. Cold Spring Harb Protoc (2010) 0.75
Profound challenges do remain in our understanding of the mechanisms of gene regulation. Biochim Biophys Acta (2007) 0.75
Purification of recombinant Drosophila NAP1. Cold Spring Harb Protoc (2009) 0.75
Preparation of (32)P-end-labeled DNA fragments for performing DNA-binding experiments. Cold Spring Harb Protoc (2013) 0.75
Protein complex binding to promoter DNA: immobilized template assay. Cold Spring Harb Protoc (2010) 0.75
Purification of recombinant Drosophila ACF. Cold Spring Harb Protoc (2009) 0.75
In vivo dimethyl sulfate (DMS) footprinting via ligation-mediated polymerase chain reaction (LM-PCR). Cold Spring Harb Protoc (2009) 0.75
Purification of mediator from HeLa cell lines expressing a flag-tagged mediator subunit. Cold Spring Harb Protoc (2010) 0.75
Purification of epitope-tagged transcription factor IID. Cold Spring Harb Protoc (2010) 0.75