Published in Nat Struct Mol Biol on March 23, 2008
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The annealing helicase SMARCAL1 maintains genome integrity at stalled replication forks. Genes Dev (2009) 2.50
The SIOD disorder protein SMARCAL1 is an RPA-interacting protein involved in replication fork restart. Genes Dev (2009) 2.44
Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity. Cell (2011) 2.26
Chromatin replication and epigenome maintenance. Nat Rev Mol Cell Biol (2012) 2.25
Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes. Nat Rev Mol Cell Biol (2009) 2.23
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RVB1/RVB2: running rings around molecular biology. Mol Cell (2009) 1.62
Crosstalk between chromatin state and DNA damage response in cellular senescence and cancer. Nat Rev Cancer (2012) 1.45
The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor. Mol Cell Biol (2010) 1.39
Rescuing stalled or damaged replication forks. Cold Spring Harb Perspect Biol (2013) 1.34
Structural biochemistry of nuclear actin-related proteins 4 and 8 reveals their interaction with actin. EMBO J (2011) 1.28
Involvement of a chromatin remodeling complex in damage tolerance during DNA replication. Nat Struct Mol Biol (2009) 1.24
Genome-wide association data reveal a global map of genetic interactions among protein complexes. PLoS Genet (2009) 1.23
HARPing on about the DNA damage response during replication. Genes Dev (2009) 1.21
Methylated H3K4, a transcription-associated histone modification, is involved in the DNA damage response pathway. PLoS Genet (2010) 1.19
Rad3 decorates critical chromosomal domains with gammaH2A to protect genome integrity during S-Phase in fission yeast. PLoS Genet (2010) 1.11
A role for H2B ubiquitylation in DNA replication. Mol Cell (2012) 1.11
Chromosome Duplication in Saccharomyces cerevisiae. Genetics (2016) 1.11
Mammalian Ino80 mediates double-strand break repair through its role in DNA end strand resection. Mol Cell Biol (2011) 1.10
Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae. Mol Cell Biol (2009) 1.09
The SNF2-family member Fun30 promotes gene silencing in heterochromatic loci. PLoS One (2009) 1.06
The INO80 chromatin remodeling complex prevents polyploidy and maintains normal chromatin structure at centromeres. Genes Dev (2012) 1.06
Post-translational modifications of histones that influence nucleosome dynamics. Chem Rev (2014) 0.99
ATR-like kinase Mec1 facilitates both chromatin accessibility at DNA replication forks and replication fork progression during replication stress. Genes Dev (2013) 0.96
Chromatin modifications and DNA repair: beyond double-strand breaks. Front Genet (2014) 0.96
The mINO80 chromatin remodeling complex is required for efficient telomere replication and maintenance of genome stability. Cell Res (2013) 0.96
Actin-related proteins localized in the nucleus: from discovery to novel roles in nuclear organization. Nucleus (2011) 0.95
Replication checkpoint: tuning and coordination of replication forks in s phase. Genes (Basel) (2013) 0.95
Fission yeast Iec1-ino80-mediated nucleosome eviction regulates nucleotide and phosphate metabolism. Mol Cell Biol (2009) 0.94
The emerging roles of ATP-dependent chromatin remodeling enzymes in nucleotide excision repair. Int J Mol Sci (2012) 0.90
Nucleosome assembly and epigenetic inheritance. Protein Cell (2010) 0.89
The Ino80 chromatin-remodeling complex restores chromatin structure during UV DNA damage repair. J Cell Biol (2010) 0.89
A role for chromatin remodellers in replication of damaged DNA. Nucleic Acids Res (2012) 0.88
Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress. Genes Dev (2016) 0.87
ATP-dependent chromatin remodeling factors tune S phase checkpoint activity. Mol Cell Biol (2011) 0.86
The mammalian INO80 chromatin remodeling complex is required for replication stress recovery. Nucleic Acids Res (2014) 0.85
Identification of novel DNA-damage tolerance genes reveals regulation of translesion DNA synthesis by nucleophosmin. Nat Commun (2014) 0.83
Temporal association of herpes simplex virus ICP4 with cellular complexes functioning at multiple steps in PolII transcription. PLoS One (2013) 0.83
INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation. Mol Cell (2015) 0.83
A genetic and molecular toolbox for analyzing histone ubiquitylation and sumoylation in yeast. Methods (2011) 0.82
Keeping chromatin quiet: how nucleosome remodeling restores heterochromatin after replication. Cell Cycle (2011) 0.82
Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair. Dev Biol (2009) 0.82
Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. Mol Biol Cell (2012) 0.82
Function of the INO80 chromatin remodeling complex in DNA replication. Front Biosci (Landmark Ed) (2012) 0.81
Proficient repair in chromatin remodeling defective ino80 mutants of Saccharomyces cerevisiae highlights replication defects as the main contributor to DNA damage sensitivity. DNA Repair (Amst) (2010) 0.81
Functions of Ubiquitin and SUMO in DNA Replication and Replication Stress. Front Genet (2016) 0.80
New mitotic regulators released from chromatin. Front Oncol (2013) 0.80
INO80 meets a fork in the road. Nat Struct Mol Biol (2008) 0.79
Chromatin remodeling factors Isw2 and Ino80 regulate checkpoint activity and chromatin structure in S phase. Genetics (2015) 0.79
Genome-wide reorganization of histone H2AX toward particular fragile sites on cell activation. Nucleic Acids Res (2013) 0.79
Facilitation of base excision repair by chromatin remodeling. DNA Repair (Amst) (2015) 0.78
Genome maintenance functions of the INO80 chromatin remodeller. Philos Trans R Soc Lond B Biol Sci (2017) 0.78
Tumour suppressor ING1b maintains genomic stability upon replication stress. Nucleic Acids Res (2011) 0.78
Replication Stress: A Lifetime of Epigenetic Change. Genes (Basel) (2015) 0.78
The INO80 remodeller in transcription, replication and repair. Philos Trans R Soc Lond B Biol Sci (2017) 0.77
The INO80 Complex Requires the Arp5-Ies6 Subcomplex for Chromatin Remodeling and Metabolic Regulation. Mol Cell Biol (2016) 0.77
Single-Molecule Observation Reveals Spontaneous Protein Dynamics in the Nucleosome. J Phys Chem B (2016) 0.76
Genetic Interaction Landscape Reveals Critical Requirements for Schizosaccharomyces pombe Brc1 in DNA Damage Response Mutants. G3 (Bethesda) (2015) 0.76
Monoubiquitylation of histone H2B contributes to the bypass of DNA damage during and after DNA replication. Proc Natl Acad Sci U S A (2017) 0.76
The Emerging Role of the Cytoskeleton in Chromosome Dynamics. Front Genet (2017) 0.76
Cooperation between SAGA and SWI/SNF complexes is required for efficient transcriptional responses regulated by the yeast MAPK Slt2. Nucleic Acids Res (2016) 0.75
An Overview of Chromatin-Regulating Proteins in Cells. Curr Protein Pept Sci (2016) 0.75
Nucleosomes influence multiple steps during replication initiation. Elife (2017) 0.75
Regulation of Replication Fork Advance and Stability by Nucleosome Assembly. Genes (Basel) (2017) 0.75
Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells. Sci Rep (2017) 0.75
Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science (2006) 11.20
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet (2008) 4.91
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc Natl Acad Sci U S A (2002) 3.52
gamma-H2AX dephosphorylation by protein phosphatase 2A facilitates DNA double-strand break repair. Mol Cell (2005) 3.24
Molecular biology. Chromatin higher order folding--wrapping up transcription. Science (2002) 2.71
A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme. Science (2013) 2.67
The SANT domain: a unique histone-tail-binding module? Nat Rev Mol Cell Biol (2004) 2.63
Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol Cell (2002) 2.33
Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity. Cell (2011) 2.26
DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell (2006) 2.25
Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast. Mol Cell (2003) 2.17
Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem (2003) 2.15
Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery. Genes Dev (2009) 2.13
Interplay between Ino80 and Swr1 chromatin remodeling enzymes regulates cell cycle checkpoint adaptation in response to DNA damage. Genes Dev (2006) 2.05
ATP-dependent chromatin remodeling. Curr Top Dev Biol (2005) 2.02
A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation. Genes Dev (2005) 1.87
Structural analysis of the yeast SWI/SNF chromatin remodeling complex. Nat Struct Biol (2003) 1.86
Chromatin and the genome integrity network. Nat Rev Genet (2013) 1.72
Phosphorylation of linker histones regulates ATP-dependent chromatin remodeling enzymes. Nat Struct Biol (2002) 1.71
Chromatin immunoprecipitation (ChIP). Cold Spring Harb Protoc (2009) 1.69
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev (2007) 1.61
Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nat Struct Mol Biol (2006) 1.58
Architecture of the SWI/SNF-nucleosome complex. Mol Cell Biol (2008) 1.58
The SIN domain of the histone octamer is essential for intramolecular folding of nucleosomal arrays. Nat Struct Biol (2002) 1.55
DNA instructed displacement of histones H2A and H2B at an inducible promoter. Mol Cell (2004) 1.53
A native peptide ligation strategy for deciphering nucleosomal histone modifications. J Biol Chem (2003) 1.53
Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae. Curr Biol (2005) 1.41
Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement. Nat Struct Mol Biol (2007) 1.35
ATP-dependent and ATP-independent roles for the Rad54 chromatin remodeling enzyme during recombinational repair of a DNA double strand break. J Biol Chem (2005) 1.31
Chromatin and transcription: histones continue to make their marks. Nat Cell Biol (2003) 1.25
A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling. Mol Cell Biol (2005) 1.24
Creating designer histones by native chemical ligation. Methods Enzymol (2004) 1.21
Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell (2009) 1.21
Nucleosome dynamics regulates DNA processing. Nat Struct Mol Biol (2013) 1.19
Switching on chromatin: mechanistic role of histone H4-K16 acetylation. Cell Cycle (2006) 1.12
The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J (2011) 1.09
Modulating acetyl-CoA binding in the GCN5 family of histone acetyltransferases. J Biol Chem (2002) 1.08
Heterochromatin assembly: a new twist on an old model. Chromosome Res (2006) 1.08
DNA repair choice defines a common pathway for recruitment of chromatin regulators. Nat Commun (2013) 1.08
The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing. Mol Cell Biol (2006) 1.06
Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. J Biol Chem (2003) 1.06
Chromatin dynamics during repair of chromosomal DNA double-strand breaks. Epigenomics (2009) 1.05
Dominant role for signal transduction in the transcriptional memory of yeast GAL genes. Mol Cell Biol (2010) 1.03
A Rad51 presynaptic filament is sufficient to capture nucleosomal homology during recombinational repair of a DNA double-strand break. Mol Cell (2008) 1.00
Role of chromatin states in transcriptional memory. Biochim Biophys Acta (2009) 0.94
Transcription. Unlocking the gates to gene expression. Science (2002) 0.93
Dignam and Roeder nuclear extract preparation. Cold Spring Harb Protoc (2009) 0.93
Opening the DNA repair toolbox: localization of DNA double strand breaks to the nuclear periphery. Cell Cycle (2010) 0.92
Experimental strategies for the identification of DNA-binding proteins. Cold Spring Harb Protoc (2012) 0.91
Effects of HMGN1 on chromatin structure and SWI/SNF-mediated chromatin remodeling. J Biol Chem (2005) 0.90
Polyamine analogues: potent inducers of nucleosomal array oligomerization and inhibitors of yeast cell growth. Biochem J (2007) 0.84
SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes. Mol Cell Biol (2011) 0.82
Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. Mol Biol Cell (2012) 0.82
Confirming the functional importance of a protein-DNA interaction. Cold Spring Harb Protoc (2012) 0.81
The RNase protection assay. Cold Spring Harb Protoc (2013) 0.81
PCR-mediated site-directed mutagenesis. Cold Spring Harb Protoc (2013) 0.79
Electrophoretic mobility-shift assays. Cold Spring Harb Protoc (2013) 0.79
G-less cassette in vitro transcription using HeLa cell nuclear extracts. Cold Spring Harb Protoc (2010) 0.79
The primer extension assay. Cold Spring Harb Protoc (2013) 0.78
In vitro transcription using HeLa cell extracts and primer extension. Cold Spring Harb Protoc (2009) 0.78
Reconstitution of nucleosomal arrays using recombinant Drosophila ACF and NAP1. Cold Spring Harb Protoc (2009) 0.78
Coupling tandem affinity purification and quantitative tyrosine iodination to determine subunit stoichiometry of protein complexes. Methods (2003) 0.78
In vivo DNase I, MNase, and restriction enzyme footprinting via ligation-mediated polymerase chain reaction (LM-PCR). Cold Spring Harb Protoc (2009) 0.78
Releasing the brakes on a chromatin-remodeling enzyme. Nat Struct Mol Biol (2013) 0.77
Identifying cis-acting DNA elements within a control region. Cold Spring Harb Protoc (2012) 0.77
Chromatin dynamics: flipping the switch on a chromatin remodeling machine. Cell Cycle (2013) 0.77
DNase I footprinting. Cold Spring Harb Protoc (2013) 0.77
Experimental strategies for cloning or identifying genes encoding DNA-binding proteins. Cold Spring Harb Protoc (2012) 0.77
Magnesium-agarose electrophoretic mobility shift assay (EMSA) of transcription factor IID binding to DNA. Cold Spring Harb Protoc (2010) 0.76
Chromatin: a ubiquitin crowbar opens chromatin. Nat Chem Biol (2011) 0.75
Potassium permanganate probing of Pol II open complexes. Cold Spring Harb Protoc (2010) 0.75
Profound challenges do remain in our understanding of the mechanisms of gene regulation. Biochim Biophys Acta (2007) 0.75
Purification of recombinant Drosophila NAP1. Cold Spring Harb Protoc (2009) 0.75
Preparation of (32)P-end-labeled DNA fragments for performing DNA-binding experiments. Cold Spring Harb Protoc (2013) 0.75
Protein complex binding to promoter DNA: immobilized template assay. Cold Spring Harb Protoc (2010) 0.75
Purification of recombinant Drosophila ACF. Cold Spring Harb Protoc (2009) 0.75
In vivo dimethyl sulfate (DMS) footprinting via ligation-mediated polymerase chain reaction (LM-PCR). Cold Spring Harb Protoc (2009) 0.75
Purification of mediator from HeLa cell lines expressing a flag-tagged mediator subunit. Cold Spring Harb Protoc (2010) 0.75
Purification of epitope-tagged transcription factor IID. Cold Spring Harb Protoc (2010) 0.75