Published in Curr Biol on August 09, 2012
The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes. Genome Biol (2013) 1.52
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proc Natl Acad Sci U S A (2013) 1.49
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Res (2013) 1.45
The locust genome provides insight into swarm formation and long-distance flight. Nat Commun (2014) 1.42
Function and evolution of DNA methylation in Nasonia vitripennis. PLoS Genet (2013) 1.14
Epigenetic modification and inheritance in sexual reversal of fish. Genome Res (2014) 1.05
Transposable element islands facilitate adaptation to novel environments in an invasive species. Nat Commun (2014) 1.04
Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc. PeerJ (2013) 1.02
A chromatin link to caste identity in the carpenter ant Camponotus floridanus. Genome Res (2012) 0.99
Ant genomics sheds light on the molecular regulation of social organization. Genome Biol (2013) 0.98
Patterning and regulatory associations of DNA methylation are mirrored by histone modifications in insects. Genome Biol Evol (2013) 0.96
The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome: possible explanations. Cell Cycle (2013) 0.93
The Genome and Methylome of a Beetle with Complex Social Behavior, Nicrophorus vespilloides (Coleoptera: Silphidae). Genome Biol Evol (2015) 0.92
Biased gene expression in early honeybee larval development. BMC Genomics (2013) 0.92
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. Proc Natl Acad Sci U S A (2015) 0.92
Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus. Science (2016) 0.91
Genome composition, caste, and molecular evolution in eusocial insects. Proc Natl Acad Sci U S A (2013) 0.90
The dynamic nature of DNA methylation: a role in response to social and seasonal variation. Integr Comp Biol (2014) 0.90
Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation. BMC Genomics (2014) 0.89
The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera. Development (2014) 0.89
Methylation and worker reproduction in the bumble-bee (Bombus terrestris). Proc Biol Sci (2014) 0.88
Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates. Front Physiol (2014) 0.87
Epigenetic inheritance and genome regulation: is DNA methylation linked to ploidy in haplodiploid insects? Proc Biol Sci (2014) 0.84
A Search for Parent-of-Origin Effects on Honey Bee Gene Expression. G3 (Bethesda) (2015) 0.83
Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior. Nat Commun (2014) 0.83
Sphingolipids, Transcription Factors, and Conserved Toolkit Genes: Developmental Plasticity in the Ant Cardiocondyla obscurior. Mol Biol Evol (2015) 0.83
Robust DNA Methylation in the Clonal Raider Ant Brain. Curr Biol (2016) 0.82
Testing the kinship theory of intragenomic conflict in honey bees (Apis mellifera). Proc Natl Acad Sci U S A (2016) 0.81
Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication. BMC Genomics (2013) 0.80
Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora. BMC Genomics (2014) 0.80
DNA Methylation in Basal Metazoans: Insights from Ctenophores. Integr Comp Biol (2015) 0.80
Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation. BMC Genomics (2016) 0.80
Epigenetics: the making of ant castes. Curr Biol (2012) 0.79
The expanding epigenetic landscape of non-model organisms. J Exp Biol (2015) 0.79
Epigenetics as an answer to Darwin's "special difficulty". Front Genet (2014) 0.78
DNA Methylation within Transcribed Regions. Plant Physiol (2015) 0.78
DNA methylation changes induced by long and short photoperiods in Nasonia. Genome Res (2015) 0.78
DNA methylation and chromatin organization in insects: insights from the Ant Camponotus floridanus. Genome Biol Evol (2015) 0.78
Epigenetics as an answer to Darwin's "special difficulty," Part 2: natural selection of metastable epialleles in honeybee castes. Front Genet (2015) 0.77
Alternative Splice in Alternative Lice. Mol Biol Evol (2015) 0.77
Social parasitism and the molecular basis of phenotypic evolution. Front Genet (2015) 0.76
What do studies of insect polyphenisms tell us about nutritionally-triggered epigenomic changes and their consequences? Nutrients (2015) 0.76
A possible role of DNA methylation in functional divergence of a fast evolving duplicate gene encoding odorant binding protein 11 in the honeybee. Proc Biol Sci (2016) 0.76
Allele specific expression in worker reproduction genes in the bumblebee Bombus terrestris. PeerJ (2015) 0.76
Social Crowding during Development Causes Changes in GnRH1 DNA Methylation. PLoS One (2015) 0.76
The evolutionary landscape of intergenic trans-splicing events in insects. Nat Commun (2015) 0.76
Gene Body Methylation Patterns in Daphnia Are Associated with Gene Family Size. Genome Biol Evol (2016) 0.76
DNA Methylation and Potential for Epigenetic Regulation in Pygospio elegans. PLoS One (2016) 0.75
The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis. Sci Rep (2016) 0.75
The right tools for the job: Regulating polyphenic morph development in insects. Curr Opin Insect Sci (2016) 0.75
Epigenetic modifications and their relation to caste and sex determination and adult division of labor in the stingless bee Melipona scutellaris. Genet Mol Biol (2017) 0.75
OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis. BMC Genomics (2016) 0.75
Effects of DNA Methylation and Chromatin State on Rates of Molecular Evolution in Insects. G3 (Bethesda) (2015) 0.75
Genome methylation patterns across castes and generations in a parasitoid wasp. Ecol Evol (2016) 0.75
Genetic architecture of key social trait differs significantly between primitive and advanced eusocial species. Proc Natl Acad Sci U S A (2015) 0.75
Novel Insights into Insect-Microbe Interactions-Role of Epigenomics and Small RNAs. Front Plant Sci (2016) 0.75
Evolution of DNA methylation across insects. Mol Biol Evol (2016) 0.75
Queen pheromones modulate DNA methyltransferase activity in bee and ant workers. Biol Lett (2016) 0.75
Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia. PLoS Biol (2016) 0.75
Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence. BMC Evol Biol (2016) 0.75
Allele specific expression and methylation in the bumblebee, Bombus terrestris. PeerJ (2017) 0.75
The Biomphalaria glabrata DNA methylation machinery displays spatial tissue expression, is differentially active in distinct snail populations and is modulated by interactions with Schistosoma mansoni. PLoS Negl Trop Dis (2017) 0.75
The association between DNA methylation and exon expression in the Pacific oyster Crassostrea gigas. PLoS One (2017) 0.75
TopHat: discovering splice junctions with RNA-Seq. Bioinformatics (2009) 81.13
SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics (2009) 39.47
Human DNA methylomes at base resolution show widespread epigenomic differences. Nature (2009) 34.27
DNA methylation patterns and epigenetic memory. Genes Dev (2002) 33.83
Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature (2008) 30.29
SNP detection for massively parallel whole-genome resequencing. Genome Res (2009) 15.96
Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet (2010) 15.70
DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet (2008) 15.45
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell (2006) 15.24
The Polycomb group protein EZH2 directly controls DNA methylation. Nature (2005) 13.67
Comprehensive analysis of CpG islands in human chromosomes 21 and 22. Proc Natl Acad Sci U S A (2002) 12.33
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet (2006) 11.88
Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science (2010) 8.46
Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc Natl Acad Sci U S A (2000) 8.12
Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A (2010) 7.30
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. Nature (2011) 5.50
X chromosome dosage compensation: how mammals keep the balance. Annu Rev Genet (2008) 5.18
Nutritional control of reproductive status in honeybees via DNA methylation. Science (2008) 5.13
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics (2004) 4.88
Molecular signals of epigenetic states. Science (2010) 4.81
The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol (2010) 4.25
DNA methylation in Drosophila melanogaster. Nature (2000) 3.46
The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol (2010) 3.42
Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes. Genes Dev (2010) 2.96
Functional CpG methylation system in a social insect. Science (2006) 2.95
Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science (2010) 2.78
CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res (2007) 2.47
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol (2010) 2.03
Nature versus nurture in social insect caste differentiation. Trends Ecol Evol (2010) 1.83
Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes. BMC Genomics (2009) 1.76
DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proc Natl Acad Sci U S A (2012) 1.65
Intragenomic conflict and the evolution of eusociality. J Theor Biol (1992) 1.44
A functional DNA methylation system in the pea aphid, Acyrthosiphon pisum. Insect Mol Biol (2010) 1.41
Theory of genomic imprinting conflict in social insects. BMC Evol Biol (2003) 1.30
Insect vitellogenin/lipophorin receptors: molecular structures, role in oogenesis, and regulatory mechanisms. J Insect Physiol (2008) 1.27
Involvement of DNA methylation in memory processing in the honey bee. Neuroreport (2010) 1.17
The many selves of social insects. Science (2002) 1.14
Does urea promote the bisulfite-mediated deamination of cytosine in DNA? Investigation aiming at speeding-up the procedure for DNA methylation analysis. Nucleic Acids Symp Ser (Oxf) (2006) 1.12
Conservation and divergence in eukaryotic DNA methylation. Proc Natl Acad Sci U S A (2010) 1.02
Paternal effects on the defensive behavior of honeybees. J Hered (2005) 0.97
Intragenomic conflict over queen determination favours genomic imprinting in eusocial Hymenoptera. Proc Biol Sci (2012) 0.92
The homolog of Ciboulot in the termite (Hodotermopsis sjostedti): a multimeric beta-thymosin involved in soldier-specific morphogenesis. BMC Dev Biol (2010) 0.87
Emerging topics in epigenetics: ants, brains, and noncoding RNAs. Ann N Y Acad Sci (2012) 0.84
SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13
The diploid genome sequence of an Asian individual. Nature (2008) 46.29
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics (2009) 39.47
Enterotypes of the human gut microbiome. Nature (2011) 24.36
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience (2012) 20.89
Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res (2008) 20.59
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A (2002) 20.48
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
SNP detection for massively parallel whole-genome resequencing. Genome Res (2009) 15.96
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein. Genes Dev (2002) 13.08
WEGO: a web tool for plotting GO annotations. Nucleic Acids Res (2006) 13.06
Mapping copy number variation by population-scale genome sequencing. Nature (2011) 12.55
A systematic survey of loss-of-function variants in human protein-coding genes. Science (2012) 12.25
The Polycomb complex PRC2 and its mark in life. Nature (2011) 11.97
A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature (2012) 11.68
Sequencing of 50 human exomes reveals adaptation to high altitude. Science (2010) 11.27
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature (2007) 9.25
Elongation by RNA polymerase II: the short and long of it. Genes Dev (2004) 9.17
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res (2006) 8.83
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Genes Dev (2004) 8.66
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
The genome of the cucumber, Cucumis sativus L. Nat Genet (2009) 8.19
IDH mutation impairs histone demethylation and results in a block to cell differentiation. Nature (2012) 7.95
An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people. Science (2012) 7.94
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
The Genomes of Oryza sativa: a history of duplications. PLoS Biol (2005) 7.67
A unified theory of gene expression. Cell (2002) 7.61
Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature (2010) 7.51
A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res (2008) 7.45
Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination. Science (2007) 7.41
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med (2011) 7.11
Richness of human gut microbiome correlates with metabolic markers. Nature (2013) 6.93
Suz12 binds to silenced regions of the genome in a cell-type-specific manner. Genome Res (2006) 6.75
TreeFam: 2008 Update. Nucleic Acids Res (2007) 6.63
A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (2004) 6.62
Role of the polycomb protein EED in the propagation of repressive histone marks. Nature (2009) 6.62
Aberrant excitatory neuronal activity and compensatory remodeling of inhibitory hippocampal circuits in mouse models of Alzheimer's disease. Neuron (2007) 6.60
Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. Genes Dev (2004) 6.19
The origin of new genes: glimpses from the young and old. Nat Rev Genet (2003) 6.14
Histones: annotating chromatin. Annu Rev Genet (2009) 5.93
FACT facilitates transcription-dependent nucleosome alteration. Science (2003) 5.83
Epigenetic dynamics of imprinted X inactivation during early mouse development. Science (2003) 5.80
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol Cell (2007) 5.78
Regulation of p53 activity through lysine methylation. Nature (2004) 5.78
Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder. Nat Genet (2011) 5.73
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell (2012) 5.62
PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. Mol Cell (2002) 5.59
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58
Histone lysine methylation: a signature for chromatin function. Trends Genet (2003) 5.55
Building the sequence map of the human pan-genome. Nat Biotechnol (2009) 5.53
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat Genet (2010) 5.44
Set9, a novel histone H3 methyltransferase that facilitates transcription by precluding histone tail modifications required for heterochromatin formation. Genes Dev (2002) 5.43
Human SirT1 interacts with histone H1 and promotes formation of facultative heterochromatin. Mol Cell (2004) 5.37
New nomenclature for chromatin-modifying enzymes. Cell (2007) 5.34
The oyster genome reveals stress adaptation and complexity of shell formation. Nature (2012) 5.30
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet (2010) 5.20
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell (2012) 5.16
Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. Cell (2006) 5.14
Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. Genes Dev (2003) 5.13
Different EZH2-containing complexes target methylation of histone H1 or nucleosomal histone H3. Mol Cell (2004) 5.06
The key to development: interpreting the histone code? Curr Opin Genet Dev (2005) 4.96
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol (2011) 4.84
An Aboriginal Australian genome reveals separate human dispersals into Asia. Science (2011) 4.84
Molecular signals of epigenetic states. Science (2010) 4.81
Hippo pathway inhibits Wnt signaling to restrain cardiomyocyte proliferation and heart size. Science (2011) 4.76
Jarid2 and PRC2, partners in regulating gene expression. Genes Dev (2010) 4.65
Composition and histone substrates of polycomb repressive group complexes change during cellular differentiation. Proc Natl Acad Sci U S A (2005) 4.57
p53 is regulated by the lysine demethylase LSD1. Nature (2007) 4.53
Repression of p53 activity by Smyd2-mediated methylation. Nature (2006) 4.51
Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study. BMJ (2011) 4.50
Ezh1 and Ezh2 maintain repressive chromatin through different mechanisms. Mol Cell (2008) 4.44
Distinct DNA methylomes of newborns and centenarians. Proc Natl Acad Sci U S A (2012) 4.26
The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol (2010) 4.25
Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains. J Biol Chem (2005) 4.20
Regression of castrate-recurrent prostate cancer by a small-molecule inhibitor of the amino-terminus domain of the androgen receptor. Cancer Cell (2010) 4.16
KaKs_Calculator: calculating Ka and Ks through model selection and model averaging. Genomics Proteomics Bioinformatics (2006) 4.15
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience (2013) 4.11
Dynamic T cell migration program provides resident memory within intestinal epithelium. J Exp Med (2010) 4.09
Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet (2012) 4.07
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation. Mol Cell (2005) 4.04