Plasticity of DNA methylation in mouse T cell activation and differentiation.

PubWeight™: 0.86‹?›

🔗 View Article (PMC 3386888)

Published in BMC Mol Biol on May 29, 2012

Authors

Yan Li1, Guobing Chen, Lina Ma, Stephen J Ohms, Chao Sun, M Frances Shannon, Jun Y Fan

Author Affiliations

1: College of Animal Science & Technology, Northwest A&F University, Yangling Shaanxi 712100, P. R. China.

Articles cited by this

DNA methylation patterns and epigenetic memory. Genes Dev (2002) 33.83

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science (2009) 32.97

Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature (2008) 30.29

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature (2010) 18.63

Stability and flexibility of epigenetic gene regulation in mammalian development. Nature (2007) 14.57

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science (2011) 14.29

Epigenetic reprogramming in mammalian development. Science (2001) 13.42

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science (2011) 13.16

Active DNA demethylation: many roads lead to Rome. Nat Rev Mol Cell Biol (2010) 9.35

DNA methylation-related chromatin remodeling in activity-dependent BDNF gene regulation. Science (2003) 8.81

DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell (2008) 8.62

Epigenetic control of the foxp3 locus in regulatory T cells. PLoS Biol (2007) 7.86

Active demethylation of the paternal genome in the mouse zygote. Curr Biol (2000) 6.99

Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell (2011) 6.80

Epigenetic reprogramming in mammals. Hum Mol Genet (2005) 6.73

Comprehensive methylome map of lineage commitment from haematopoietic progenitors. Nature (2010) 6.06

Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation. Immunity (1998) 5.38

Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis. Science (2009) 5.24

Epigenetic reprogramming in plant and animal development. Science (2010) 5.18

Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming. J Biol Chem (2004) 4.86

Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process. Nat Immunol (2003) 4.83

Highly purified Th17 cells from BDC2.5NOD mice convert into Th1-like cells in NOD/SCID recipient mice. J Clin Invest (2009) 4.74

The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites. Nature (1999) 4.63

CREB/ATF-dependent T cell receptor-induced FoxP3 gene expression: a role for DNA methylation. J Exp Med (2007) 4.42

The inheritance of epigenetic defects. Science (1987) 4.15

Rethinking how DNA methylation patterns are maintained. Nat Rev Genet (2009) 4.03

DNA demethylation dynamics. Cell (2011) 3.82

DNA demethylation in the human FOXP3 locus discriminates regulatory T cells from activated FOXP3(+) conventional T cells. Eur J Immunol (2007) 3.80

Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet (2009) 3.66

PGC7/Stella protects against DNA demethylation in early embryogenesis. Nat Cell Biol (2006) 3.54

DNMT1 is required to maintain CpG methylation and aberrant gene silencing in human cancer cells. Nat Genet (2002) 3.25

Epigenetic regulation of Foxp3 expression in regulatory T cells by DNA methylation. J Immunol (2009) 2.87

Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity. Genome Res (2009) 2.87

IL-18-stimulated GADD45 beta required in cytokine-induced, but not TCR-induced, IFN-gamma production. Nat Immunol (2001) 2.81

Distinct DNA methylation changes highly correlated with chronological age in the human brain. Hum Mol Genet (2011) 2.62

Developmental plasticity of Th17 and Treg cells. Curr Opin Immunol (2009) 2.53

Cell type-specific DNA methylation at intragenic CpG islands in the immune system. Genome Res (2011) 2.51

Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene. J Immunol (2001) 2.40

Interleukin 2, but not other common gamma chain-binding cytokines, can reverse the defect in generation of CD4 effector T cells from naive T cells of aged mice. J Exp Med (1999) 2.33

Epigenetic mechanisms of regulation of Foxp3 expression. Blood (2009) 2.27

Methylated DNA immunoprecipitation (MeDIP). Methods Mol Biol (2009) 2.17

Independent and epigenetic regulation of the interleukin-4 alleles in CD4+ T cells. Science (1998) 2.13

DNA methylation dynamics in human induced pluripotent stem cells over time. PLoS Genet (2011) 2.00

The aging of the immune system. Adv Immunol (2002) 1.96

Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging. Blood (2011) 1.92

The role of epigenetics in aging and age-related diseases. Ageing Res Rev (2009) 1.89

Epigenetic remodeling of the IL-2 and IFN-gamma loci in memory CD8 T cells is influenced by CD4 T cells. J Immunol (2006) 1.88

Accumulation of memory T cells from childhood to old age: central and effector memory cells in CD4(+) versus effector memory and terminally differentiated memory cells in CD8(+) compartment. Mech Ageing Dev (2005) 1.81

GADD45gamma mediates the activation of the p38 and JNK MAP kinase pathways and cytokine production in effector TH1 cells. Immunity (2001) 1.73

Global DNA demethylation during mouse erythropoiesis in vivo. Science (2011) 1.73

A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory. EMBO J (2006) 1.71

Distinctive patterns of age-dependent hypomethylation in interspersed repetitive sequences. Physiol Genomics (2010) 1.67

Treating activated CD4+ T cells with either of two distinct DNA methyltransferase inhibitors, 5-azacytidine or procainamide, is sufficient to cause a lupus-like disease in syngeneic mice. J Clin Invest (1993) 1.64

c-Rel is required for chromatin remodeling across the IL-2 gene promoter. J Immunol (2003) 1.64

Active recruitment of DNA methyltransferases regulates interleukin 4 in thymocytes and T cells. Nat Immunol (2003) 1.62

Demethylation of promoter regulatory elements contributes to perforin overexpression in CD4+ lupus T cells. J Immunol (2004) 1.58

Rapid demethylation of the IFN-gamma gene occurs in memory but not naive CD8 T cells. J Immunol (2006) 1.58

Histone dynamics on the interleukin-2 gene in response to T-cell activation. Mol Cell Biol (2005) 1.57

Gadd45beta is important for perpetuating cognate and inflammatory signals in T cells. Nat Immunol (2003) 1.52

A promoter DNA demethylation landscape of human hematopoietic differentiation. Nucleic Acids Res (2011) 1.49

Differential age-change in the numbers of CD4+CD45RA+ and CD4+CD29+ T cell subsets in human peripheral blood. Mech Ageing Dev (1992) 1.46

Active tissue-specific DNA demethylation conferred by somatic cell nuclei in stable heterokaryons. Proc Natl Acad Sci U S A (2007) 1.40

Age-associated changes within CD4+ T cells. Immunol Lett (2006) 1.38

Multiple tumor suppressor genes are increasingly methylated with age in non-neoplastic gastric epithelia. Cancer Sci (2006) 1.33

Effect of promoter methylation on the regulation of IFN-gamma gene during in vitro differentiation of human peripheral blood T cells into a Th2 population. J Immunol (2003) 1.29

A distinct region of the murine IFN-gamma promoter is hypomethylated from early T cell development through mature naive and Th1 cell differentiation, but is hypermethylated in Th2 cells. J Immunol (2004) 1.26

Changes in chromatin accessibility across the GM-CSF promoter upon T cell activation are dependent on nuclear factor kappaB proteins. J Exp Med (2003) 1.23

Age-dependent DNA methylation changes in the ITGAL (CD11a) promoter. Mech Ageing Dev (2002) 1.20

Aging results in hypermethylation of ribosomal DNA in sperm and liver of male rats. Proc Natl Acad Sci U S A (2003) 1.19

Epigenetic inheritance of DNA methylation limits activation-induced expression of FOXP3 in conventional human CD25-CD4+ T cells. Int Immunol (2008) 1.16

Overexpression of the growth arrest and DNA damage-induced 45alpha gene contributes to autoimmunity by promoting DNA demethylation in lupus T cells. Arthritis Rheum (2010) 1.12

CD44 Reciprocally regulates the differentiation of encephalitogenic Th1/Th17 and Th2/regulatory T cells through epigenetic modulation involving DNA methylation of cytokine gene promoters, thereby controlling the development of experimental autoimmune encephalomyelitis. J Immunol (2011) 1.08

Rapid ex vivo isolation and long-term culture of human Th17 cells. J Immunol Methods (2008) 1.07

Age-related decreases in IL-2 production by human T cells are associated with impaired activation of nuclear transcriptional factors AP-1 and NF-AT. Cell Immunol (1996) 1.03

The human IL-2 gene promoter can assemble a positioned nucleosome that becomes remodeled upon T cell activation. J Immunol (2002) 1.02

Gadd45 proteins as critical signal transducers linking NF-kappaB to MAPK cascades. Curr Cancer Drug Targets (2009) 1.00

Transcript levels of DNA methyltransferases DNMT1, DNMT3A and DNMT3B in CD4+ T cells from patients with systemic lupus erythematosus. Immunology (2008) 0.97

Methylation analysis by DNA immunoprecipitation (MeDIP). Methods Mol Biol (2009) 0.89

Transcript overexpression of the MBD2 and MBD4 genes in CD4+ T cells from systemic lupus erythematosus patients. J Leukoc Biol (2007) 0.89

Chromatin structure and DNA methylation of the IL-4 gene in human T(H)2 cells. Chromosome Res (2009) 0.81

Articles by these authors

A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res (2008) 7.45

An autocrine TGF-beta/ZEB/miR-200 signaling network regulates establishment and maintenance of epithelial-mesenchymal transition. Mol Biol Cell (2011) 2.49

The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression. Nat Struct Mol Biol (2007) 2.44

c-Rel is required for the development of thymic Foxp3+ CD4 regulatory T cells. J Exp Med (2009) 1.85

Aspirin for primary prevention in patients with diabetes mellitus. Fam Med (2005) 1.75

Combined effects of ezetimibe and phytosterols on cholesterol metabolism: a randomized, controlled feeding study in humans. Circulation (2011) 1.74

c-Rel is required for chromatin remodeling across the IL-2 gene promoter. J Immunol (2003) 1.64

Histone dynamics on the interleukin-2 gene in response to T-cell activation. Mol Cell Biol (2005) 1.57

Coagulation profiles and thromboembolic events of bortezomib plus thalidomide and dexamethasone therapy in newly diagnosed multiple myeloma. Leuk Res (2010) 1.47

Potent hepatitis B surface antigen response to treatment of hepatitis-B-e-antigen-positive chronic hepatitis B with α-interferon plus a nucleos(t)ide analog. J Gastroenterol Hepatol (2012) 1.46

Efficacy and safety between temozolomide alone and temozolomide-based double therapy for malignant melanoma: a meta-analysis. Tumour Biol (2013) 1.45

Genome-wide analysis of gene expression in T cells to identify targets of the NF-kappa B transcription factor c-Rel. J Immunol (2007) 1.43

The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza. PLoS One (2013) 1.38

Cardiolipin remodeling by ALCAT1 links oxidative stress and mitochondrial dysfunction to obesity. Cell Metab (2010) 1.36

Genome sequence of the model medicinal mushroom Ganoderma lucidum. Nat Commun (2012) 1.30

Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer. BMC Genomics (2013) 1.28

Genome-wide identification of human FOXP3 target genes in natural regulatory T cells. J Immunol (2010) 1.28

Changes in chromatin accessibility across the GM-CSF promoter upon T cell activation are dependent on nuclear factor kappaB proteins. J Exp Med (2003) 1.23

Myb promotes centriole amplification and later steps of the multiciliogenesis program. Development (2013) 1.17

Herbal products and dietary supplements: a survey of use, attitudes, and knowledge among older adults. J Am Osteopath Assoc (2007) 1.16

Comparison of 454-ESTs from Huperzia serrata and Phlegmariurus carinatus reveals putative genes involved in lycopodium alkaloid biosynthesis and developmental regulation. BMC Plant Biol (2010) 1.16

Defining the chromatin signature of inducible genes in T cells. Genome Biol (2009) 1.15

The NF-κB transcription factor c-Rel is required for Th17 effector cell development in experimental autoimmune encephalomyelitis. J Immunol (2011) 1.15

EST analysis reveals putative genes involved in glycyrrhizin biosynthesis. BMC Genomics (2010) 1.13

A novel DNA sequence periodicity decodes nucleosome positioning. Nucleic Acids Res (2008) 1.10

Mg-doped VO2 nanoparticles: hydrothermal synthesis, enhanced visible transmittance and decreased metal-insulator transition temperature. Phys Chem Chem Phys (2013) 1.10

The transcription repressor, ZEB1, cooperates with CtBP2 and HDAC1 to suppress IL-2 gene activation in T cells. Int Immunol (2009) 1.10

Regulation of the IL-21 gene by the NF-κB transcription factor c-Rel. J Immunol (2010) 1.10

Assessing the association of hyperglycaemia with mortality in patients with hip fractures. Eur J Emerg Med (2015) 1.09

Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers. BMC Genomics (2011) 1.09

Assessing Efficacy of Preoxygenation Techniques in ICU Patients. Crit Care Med (2015) 1.08

Comparing Performance of Video and Direct Laryngoscopes for Urgent Endotracheal Intubation. Crit Care Med (2015) 1.08

Genetic variation in IL28B is associated with the development of hepatitis B-related hepatocellular carcinoma. Cancer Immunol Immunother (2012) 1.08

Using a Paralleled Origin of Sampling Line to Prevent its Intraoperative Kinking. J Neurosurg Anesthesiol (2015) 1.06

Association of Glycemic Control in Type 1 Diabetes With Long-Term Risk After CABG. J Am Coll Cardiol (2015) 1.06

Analysis of expressed sequence tags from the Huperzia serrata leaf for gene discovery in the areas of secondary metabolite biosynthesis and development regulation. Physiol Plant (2009) 1.06

Using the C-MAC videolaryngoscope as a first-line device for out-of-hospital emergency intubation. Eur J Anaesthesiol (2016) 1.06

Dose effects of dietary phytosterols on cholesterol metabolism: a controlled feeding study. Am J Clin Nutr (2009) 1.05

Combined strategy of mesenchymal stem cell injection with vascular endothelial growth factor gene therapy for the treatment of diabetes-associated erectile dysfunction. J Androl (2011) 1.05

Association of Postoperative Hypoalbuminemia With Acute Kidney Injury Following Liver Transplantation. Crit Care Med (2016) 1.04

The gene regulatory cascade linking proneural specification with differentiation in Drosophila sensory neurons. PLoS Biol (2011) 1.04

The human IL-2 gene promoter can assemble a positioned nucleosome that becomes remodeled upon T cell activation. J Immunol (2002) 1.02

Piperlongumine induces inhibition of the ubiquitin-proteasome system in cancer cells. Biochem Biophys Res Commun (2013) 1.01

High-accuracy de novo assembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy. New Phytol (2014) 1.01

Transcript profiles of Panax quinquefolius from flower, leaf and root bring new insights into genes related to ginsenosides biosynthesis and transcriptional regulation. Physiol Plant (2009) 1.00

Efficacy and safety of endoscopic submucosal dissection in treating gastric subepithelial tumors originating in the muscularis propria layer: a single-center study of 144 cases. Scand J Gastroenterol (2013) 0.99

Changes in the expression of miR-381 and miR-495 are inversely associated with the expression of the MDR1 gene and development of multi-drug resistance. PLoS One (2013) 0.97

The effect of cytokine profiles on the viral response to re-treatment in antiviral-experienced patients with chronic hepatitis C virus infection. Antiviral Res (2011) 0.97

Transcriptional data mining of Salvia miltiorrhiza in response to methyl jasmonate to examine the mechanism of bioactive compound biosynthesis and regulation. Physiol Plant (2014) 0.97

Serum 25(OH)D is inversely associated with metabolic syndrome risk profile among urban middle-aged Chinese population. Nutr J (2012) 0.93

Co-treatment with ginsenoside Rh2 and betulinic acid synergistically induces apoptosis in human cancer cells in association with enhanced capsase-8 activation, bax translocation, and cytochrome c release. Mol Carcinog (2011) 0.93

Development of CD4+CD25+FoxP3+ regulatory T cells from cord blood hematopoietic progenitor cells. J Leukoc Biol (2008) 0.92

Inhibition of hippocampal synaptic activity by ATP, hypoxia or oxygen-glucose deprivation does not require CD73. PLoS One (2012) 0.92

Nanoparticle-based systems for T(1)-weighted magnetic resonance imaging contrast agents. Int J Mol Sci (2013) 0.92

Phytosterol-deficient and high-phytosterol diets developed for controlled feeding studies. J Am Diet Assoc (2009) 0.92

De novo characterization of the root transcriptome of a traditional Chinese medicinal plant Polygonum cuspidatum. Sci China Life Sci (2012) 0.92

Functional genomics of a living fossil tree, Ginkgo, based on next-generation sequencing technology. Physiol Plant (2011) 0.91

Growth promotion of Chinese cabbage and Arabidopsis by Piriformospora indica is not stimulated by mycelium-synthesized auxin. Mol Plant Microbe Interact (2011) 0.91

GM-CSF promoter chromatin remodelling and gene transcription display distinct signal and transcription factor requirements. Nucleic Acids Res (2005) 0.91

Drop impact on superheated surfaces. Phys Rev Lett (2012) 0.91

RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Res (2013) 0.91

[Transcriptome characterization for Salvia miltiorrhiza using 454 GS FLX]. Yao Xue Xue Bao (2010) 0.90

Distinctive microRNA signature is associated with the diagnosis and prognosis of acute leukemia. Med Oncol (2011) 0.90

Comparing Video and Direct Laryngoscopy in Critically Ill Patients: Rational Study Design Is Important. Crit Care Med (2017) 0.90

Phytosterol glycosides reduce cholesterol absorption in humans. Am J Physiol Gastrointest Liver Physiol (2009) 0.90

Induction of tumor cell apoptosis by a proteasome deubiquitinase inhibitor is associated with oxidative stress. Antioxid Redox Signal (2013) 0.90

Analysis of the Dendrobium officinale transcriptome reveals putative alkaloid biosynthetic genes and genetic markers. Gene (2013) 0.89

Spatial distribution of heat flux and fluctuations in turbulent Rayleigh-Bénard convection. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.89

Synapses of amphids defective (SAD-A) kinase promotes glucose-stimulated insulin secretion through activation of p21-activated kinase (PAK1) in pancreatic β-Cells. J Biol Chem (2012) 0.89

Analysis of synonymous codon usage in hepatitis A virus. Virol J (2011) 0.89

Direct measurements of air layer profiles under impacting droplets using high-speed color interferometry. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.89

Transcriptome analysis of buds and leaves using 454 pyrosequencing to discover genes associated with the biosynthesis of active ingredients in Lonicera japonica Thunb. PLoS One (2013) 0.88

Pyrosequencing of the Camptotheca acuminata transcriptome reveals putative genes involved in camptothecin biosynthesis and transport. BMC Genomics (2011) 0.88

Torque scaling in turbulent Taylor-Couette flow with co- and counterrotating cylinders. Phys Rev Lett (2011) 0.88

Glucosamine suppresses proliferation of human prostate carcinoma DU145 cells through inhibition of STAT3 signaling. Cancer Cell Int (2009) 0.88

Transcriptome analysis of Taxus cuspidata needles based on 454 pyrosequencing. Planta Med (2010) 0.88

Direct development of functionally mature tryptase/chymase double-positive connective tissue-type mast cells from primate embryonic stem cells. Stem Cells (2007) 0.88

Graphene oxide-deposited microfiber: a new photothermal device for various microbubble generation. Opt Express (2013) 0.88

A role for Ets1, synergizing with AP-1 and GATA-3 in the regulation of IL-5 transcription in mouse Th2 lymphocytes. Int Immunol (2005) 0.87

Comparing Sedation Regimens for Awake Fiberoptic Intubation. Chin Med J (Engl) (2016) 0.87

Antioxidant flavonoids from Epimedium wushanense. Fitoterapia (2011) 0.87

Control of interleukin-2 gene transcription: a paradigm for inducible, tissue-specific gene expression. Vitam Horm (2006) 0.87

Radiograph use in low back pain: a United States Emergency Department database analysis. J Emerg Med (2004) 0.87

Endoscopic submucosal dissection of large gastrointestinal stromal tumors in the esophagus and stomach. J Gastroenterol Hepatol (2013) 0.86

The impact of CpG island on defining transcriptional activation of the mouse L1 retrotransposable elements. PLoS One (2010) 0.86

The effect of electro-acupuncture on spasticity of the wrist joint in chronic stroke survivors. Arch Phys Med Rehabil (2007) 0.86

Genome-wide identification of phenolic acid biosynthetic genes in Salvia miltiorrhiza. Planta (2014) 0.86

Control of slippage with tunable bubble mattresses. Proc Natl Acad Sci U S A (2013) 0.86

Different curve pattern and other radiographical characteristics in male and female patients with adolescent idiopathic scoliosis. Spine (Phila Pa 1976) (2012) 0.86

Translational selection in human: more pronounced in housekeeping genes. Biol Direct (2014) 0.85

Expression of interleukin-22/STAT3 signaling pathway in ulcerative colitis and related carcinogenesis. World J Gastroenterol (2013) 0.85

Coadministration of platelet-derived growth factor-BB and vascular endothelial growth factor with bladder acellular matrix enhances smooth muscle regeneration and vascularization for bladder augmentation in a rabbit model. Tissue Eng Part A (2012) 0.85

Photonic bandgap fiber tapers and in-fiber interferometric sensors. Opt Lett (2009) 0.85

Plasma sterol evidence for decreased absorption and increased synthesis of cholesterol in insulin resistance and obesity. Am J Clin Nutr (2011) 0.85

Efficient gene delivery using reconstituted chromatin enhanced for nuclear targeting. FASEB J (2008) 0.85