Published in Plant Cell on June 29, 2012
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature (2000) 70.33
Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19
Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell (2008) 32.65
A species of small antisense RNA in posttranscriptional gene silencing in plants. Science (1999) 19.34
RNA silencing in plants. Nature (2004) 11.12
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature (2010) 10.66
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21
The F-box protein TIR1 is an auxin receptor. Nature (2005) 9.45
Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science (2009) 8.84
JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Nature (2007) 8.78
Metabolite profiling for plant functional genomics. Nat Biotechnol (2000) 8.74
The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature (2005) 8.70
The JAZ family of repressors is the missing link in jasmonate signalling. Nature (2007) 8.66
FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis. Science (2007) 8.26
GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Nature (2005) 5.60
Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell (2005) 5.54
Hd3a protein is a mobile flowering signal in rice. Science (2007) 5.05
CHL1 functions as a nitrate sensor in plants. Cell (2009) 4.20
A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis. Cell (2006) 3.58
Adaptation to climate across the Arabidopsis thaliana genome. Science (2011) 2.89
Genetic analysis of plant salt tolerance using Arabidopsis. Plant Physiol (2000) 2.80
The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches. Proc Natl Acad Sci U S A (2006) 2.41
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res (2007) 2.40
A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol (2009) 1.95
A Ca(2)+ signaling pathway regulates a K(+) channel for low-K response in Arabidopsis. Proc Natl Acad Sci U S A (2006) 1.85
AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis. Plant Physiol (2009) 1.81
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol (2010) 1.59
The CBL-CIPK Ca(2+)-decoding signaling network: function and perspectives. New Phytol (2009) 1.44
Plant genetics, sustainable agriculture and global food security. Genetics (2011) 1.21
A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response. PLoS Genet (2012) 1.18
Unpredictability of metabolism--the key role of metabolomics science in combination with next-generation genome sequencing. Anal Bioanal Chem (2011) 1.11
The effect of potassium nutrition on pest and disease resistance in plants. Physiol Plant (2008) 1.11
Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology. J Proteomics (2011) 1.10
An international bioinformatics infrastructure to underpin the Arabidopsis community. Plant Cell (2010) 1.08
Taking the next step: building an Arabidopsis information portal. Plant Cell (2012) 1.06
The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology. J Proteome Res (2008) 0.85
The F-box protein TIR1 is an auxin receptor. Nature (2005) 9.45
Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature (2007) 8.21
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science (2006) 7.74
GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics (2004) 7.33
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell (2005) 5.54
Multiple pathways in the decision to flower: enabling, promoting, and resetting. Plant Cell (2004) 3.74
Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science (2011) 3.72
The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature (2002) 3.40
Recent advances and emerging trends in plant hormone signalling. Nature (2009) 3.32
Auxin receptors and plant development: a new signaling paradigm. Annu Rev Cell Dev Biol (2008) 3.21
Mechanism of auxin-regulated gene expression in plants. Annu Rev Genet (2009) 3.11
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (2011) 3.10
Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res (2004) 3.02
Sites and regulation of auxin biosynthesis in Arabidopsis roots. Plant Cell (2005) 2.94
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell (2011) 2.77
The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol (2011) 2.74
The ubiquitin-proteasome pathway and plant development. Plant Cell (2004) 2.72
Plant development: regulation by protein degradation. Science (2002) 2.64
Resistance to Ralstonia solanacearum in Arabidopsis thaliana is conferred by the recessive RRS1-R gene, a member of a novel family of resistance genes. Proc Natl Acad Sci U S A (2002) 2.41
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res (2007) 2.40
CATMA: a complete Arabidopsis GST database. Nucleic Acids Res (2003) 2.34
Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell (2007) 2.21
A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Nat Chem Biol (2012) 2.18
Auxin signaling and regulated protein degradation. Trends Plant Sci (2004) 2.15
The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell (2003) 2.14
AXR1-ECR1-dependent conjugation of RUB1 to the Arabidopsis Cullin AtCUL1 is required for auxin response. Plant Cell (2002) 2.09
Phosphate availability alters lateral root development in Arabidopsis by modulating auxin sensitivity via a mechanism involving the TIR1 auxin receptor. Plant Cell (2008) 2.08
Auxin action in a cell-free system. Curr Biol (2003) 1.93
Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Mol Syst Biol (2010) 1.91
Plant hormones are versatile chemical regulators of plant growth. Nat Chem Biol (2009) 1.89
Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Plant J (2003) 1.89
Null mutation of AtCUL1 causes arrest in early embryogenesis in Arabidopsis. Mol Biol Cell (2002) 1.78
Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. Plant Physiol (2005) 1.76
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics (2007) 1.71
The TRANSPORT INHIBITOR RESPONSE2 gene is required for auxin synthesis and diverse aspects of plant development. Plant Physiol (2009) 1.70
Role of the Arabidopsis RING-H2 protein RBX1 in RUB modification and SCF function. Plant Cell (2002) 1.66
Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J (2004) 1.65
The IAA1 protein is encoded by AXR5 and is a substrate of SCF(TIR1). Plant J (2004) 1.63
The ubiquitin-proteasome system regulates plant hormone signaling. Plant J (2010) 1.63
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol (2010) 1.59
The role of regulated protein degradation in auxin response. Plant Mol Biol (2002) 1.56
Auxin receptors: a new role for F-box proteins. Curr Opin Cell Biol (2006) 1.55
Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. Plant Cell (2012) 1.53
Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis. J Biol Chem (2005) 1.52
The Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are nucleoporins with an important role in hormone signaling and development. Plant Cell (2006) 1.52
The RUB/Nedd8 conjugation pathway is required for early development in Arabidopsis. EMBO J (2003) 1.50
Arabidopsis AXR6 encodes CUL1 implicating SCF E3 ligases in auxin regulation of embryogenesis. EMBO J (2003) 1.45
D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell (2005) 1.43
Differential multisite phosphorylation of the trehalose-6-phosphate synthase gene family in Arabidopsis thaliana: a mass spectrometry-based process for multiparallel peptide library phosphorylation analysis. Mol Cell Proteomics (2005) 1.42
Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nat Commun (2013) 1.40
Distinct regulation of CAB and PHYB gene expression by similar circadian clocks. Plant J (2002) 1.36
Retracted The AFB4 auxin receptor is a negative regulator of auxin signaling in seedlings. Curr Biol (2011) 1.36
Nitric oxide influences auxin signaling through S-nitrosylation of the Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 auxin receptor. Plant J (2012) 1.35
Metabolite profiling in plant biology: platforms and destinations. Genome Biol (2004) 1.33
A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis. Plant Cell (2008) 1.32
Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. Plant J (2010) 1.32
Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics (2008) 1.31
Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog (2011) 1.29
Regulation of cullin-based ubiquitin ligases by the Nedd8/RUB ubiquitin-like proteins. Semin Cell Dev Biol (2004) 1.29
Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics (2005) 1.28
Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE. Plant Physiol (2006) 1.27
New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. Proc Natl Acad Sci U S A (2008) 1.27
The impact of Arabidopsis on human health: diversifying our portfolio. Cell (2008) 1.27
Auxin perception--structural insights. Cold Spring Harb Perspect Biol (2010) 1.27
Subcellular localization of the Hpa RxLR effector repertoire identifies a tonoplast-associated protein HaRxL17 that confers enhanced plant susceptibility. Plant J (2011) 1.25
Arabidopsis AtCUL3a and AtCUL3b form complexes with members of the BTB/POZ-MATH protein family. Plant Physiol (2004) 1.23
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Proc Natl Acad Sci U S A (2012) 1.22
MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Plant Physiol (2012) 1.22
Deletion of glycine decarboxylase in Arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiol (2007) 1.22
Medicago truncatula root nodule proteome analysis reveals differential plant and bacteroid responses to drought stress. Plant Physiol (2007) 1.21
A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. Plant J (2013) 1.18
Overexpression of a chromatin architecture-controlling AT-hook protein extends leaf longevity and increases the post-harvest storage life of plants. Plant J (2007) 1.18
Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant J (2008) 1.18
An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. J Basic Microbiol (2009) 1.17
Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root. Proc Natl Acad Sci U S A (2013) 1.16
Hypocotyl transcriptome reveals auxin regulation of growth-promoting genes through GA-dependent and -independent pathways. PLoS One (2012) 1.15
Point mutations in Arabidopsis Cullin1 reveal its essential role in jasmonate response. Plant J (2005) 1.15
Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid. Plant Cell (2013) 1.15
Physcomitrella patens auxin-resistant mutants affect conserved elements of an auxin-signaling pathway. Curr Biol (2010) 1.14
The Arabidopsis D-type cyclin CYCD2;1 and the inhibitor ICK2/KRP2 modulate auxin-induced lateral root formation. Plant Cell (2011) 1.14
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana. Mol Cell Proteomics (2008) 1.13
STAIRS: a new genetic resource for functional genomic studies of Arabidopsis. Plant J (2002) 1.13
Cell-specific protein profiling in Arabidopsis thaliana trichomes: identification of trichome-located proteins involved in sulfur metabolism and detoxification. Phytochemistry (2004) 1.13
Deciphering metabolic networks. Eur J Biochem (2003) 1.13
A new CULLIN 1 mutant has altered responses to hormones and light in Arabidopsis. Plant Physiol (2006) 1.12
Consistency analysis of metabolic correlation networks. BMC Syst Biol (2007) 1.11
Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography. Mol Cell Proteomics (2012) 1.10
Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods (2005) 1.10
Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases. Plant J (2007) 1.10
Metabolomics unravel contrasting effects of biodiversity on the performance of individual plant species. PLoS One (2010) 1.07
Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. Plant Cell (2012) 1.07
Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Mol Biosyst (2010) 1.06
CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinformatics (2007) 1.06
Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. J Exp Bot (2006) 1.05
Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism. Metabolomics (2012) 1.04
Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. Bioinformatics (2009) 1.03
A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics (2008) 1.03
A gentle guide to the analysis of metabolomic data. Methods Mol Biol (2007) 1.02