Published in BMC Genomics on October 10, 2007
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res (2008) 6.43
Kruppel-like factor 4 (KLF4) is required for maintenance of breast cancer stem cells and for cell migration and invasion. Oncogene (2011) 2.36
Exhaustive search for over-represented DNA sequence motifs with CisFinder. DNA Res (2009) 1.94
Kruppel-like factor 4 (Klf4) prevents embryonic stem (ES) cell differentiation by regulating Nanog gene expression. J Biol Chem (2010) 1.48
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development. RNA (2009) 1.44
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Pro-proliferative factor KLF5 becomes anti-proliferative in epithelial homeostasis upon signaling-mediated modification. J Biol Chem (2008) 1.21
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Bone marrow mesenchymal stem cells differentiate into urothelial cells and the implications for reconstructing urinary bladder mucosa. Cytotechnology (2011) 0.93
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Learning biomarkers of pluripotent stem cells in mouse. DNA Res (2011) 0.82
The transcription factor KLF4 as an independent predictive marker for pathologic complete remission in breast cancer neoadjuvant chemotherapy: a case-control study. Onco Targets Ther (2014) 0.81
CBARA1 plays a role in stemness and proliferation of human embryonic stem cells. PLoS One (2013) 0.78
Elevated Krüppel-like factor 4 transcription factor in canine mammary carcinoma. BMC Vet Res (2011) 0.78
Regulatable in vivo biotinylation expression system in mouse embryonic stem cells. PLoS One (2013) 0.76
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Klf2 contributes to the stemness and self-renewal of human bone marrow stromal cells. Cytotechnology (2014) 0.75
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Krüppel-like zinc-finger transcription factor KLF5/BTEB2 is a target for angiotensin II signaling and an essential regulator of cardiovascular remodeling. Nat Med (2002) 2.61
Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol Cell Biol (2006) 2.59
Elimination of zinc from synaptic vesicles in the intact mouse brain by disruption of the ZnT3 gene. Proc Natl Acad Sci U S A (1999) 2.50
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Mammalian SP/KLF transcription factors: bring in the family. Genomics (2005) 2.37
Murine embryonic stem cell differentiation is promoted by SOCS-3 and inhibited by the zinc finger transcription factor Klf4. Blood (2004) 2.35
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An abundant erythroid protein that stabilizes free alpha-haemoglobin. Nature (2002) 2.33
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A global role for EKLF in definitive and primitive erythropoiesis. Blood (2005) 2.24
Identification of the DNA sequence that interacts with the gut-enriched Krüppel-like factor. Nucleic Acids Res (1998) 2.23
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The mouse pudgy mutation disrupts Delta homologue Dll3 and initiation of early somite boundaries. Nat Genet (1998) 1.96
Emerging role of KLF4 in human gastrointestinal cancer. Carcinogenesis (2005) 1.94
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Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development (2000) 1.66
Embryonic stem cell development in a chemically defined medium. Exp Cell Res (1999) 1.63
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Intestinal tumor progression is associated with altered function of KLF5. J Biol Chem (2004) 1.53
FENS-1 and DFCP1 are FYVE domain-containing proteins with distinct functions in the endosomal and Golgi compartments. J Cell Sci (2001) 1.52
Transcriptional profiling of mouse and human ES cells identifies SLAIN1, a novel stem cell gene. Dev Biol (2006) 1.47
Testicular cell conditioned medium supports differentiation of embryonic stem cells into ovarian structures containing oocytes. Stem Cells (2005) 1.46
Regulation of microtubule dynamics and myogenic differentiation by MURF, a striated muscle RING-finger protein. J Cell Biol (2000) 1.45
Erythroid Krüppel-like factor directly activates the basic Krüppel-like factor gene in erythroid cells. Mol Cell Biol (2007) 1.45
Scalable production of embryonic stem cell-derived cardiomyocytes. Tissue Eng (2003) 1.44
High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. Gene Expr Patterns (2005) 1.43
Dynamic localization and functional implications of Aurora-C kinase during male mouse meiosis. Dev Biol (2006) 1.43
Transcriptional pathways in second heart field development. Semin Cell Dev Biol (2007) 1.43
Differential expression of steroidogenic factor-1 and FTF/LRH-1 in the rodent ovary. Endocrinology (2003) 1.42
Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods (2008) 31.04
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Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet (2006) 17.19
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature (2012) 8.31
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res (2008) 6.43
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet (2009) 6.02
The regulated retrotransposon transcriptome of mammalian cells. Nat Genet (2009) 5.79
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res (2005) 4.86
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The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma. Nature (2012) 3.23
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE. Genomics (2008) 3.19
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A de novo mutation in the β-tubulin gene TUBB4A results in the leukoencephalopathy hypomyelination with atrophy of the basal ganglia and cerebellum. Am J Hum Genet (2013) 2.42
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition. Genome Biol (2008) 2.29
PINA v2.0: mining interactome modules. Nucleic Acids Res (2011) 2.23
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Transcriptome content and dynamics at single-nucleotide resolution. Genome Biol (2008) 2.12
A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells. Genome Res (2010) 2.02
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Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment. Dev Biol (2009) 1.83
Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma. Proc Natl Acad Sci U S A (2012) 1.82
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Genome-wide identification of long noncoding RNAs in CD8+ T cells. J Immunol (2009) 1.73
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proc Natl Acad Sci U S A (2012) 1.72
The phasevarion: a genetic system controlling coordinated, random switching of expression of multiple genes. Proc Natl Acad Sci U S A (2005) 1.63
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Novel genes regulated by Sonic Hedgehog in pluripotent mesenchymal cells. Oncogene (2002) 1.51
Widespread failure of hematolymphoid differentiation caused by a recessive niche-filling allele of the Ikaros transcription factor. Immunity (2003) 1.51
Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells. Stem Cells (2010) 1.50
Thyroid hormone-regulated enhancer blocking: cooperation of CTCF and thyroid hormone receptor. EMBO J (2003) 1.49
Phasevarions mediate random switching of gene expression in pathogenic Neisseria. PLoS Pathog (2009) 1.48
Mutations in DARS cause hypomyelination with brain stem and spinal cord involvement and leg spasticity. Am J Hum Genet (2013) 1.46
Comprehensive transcriptome and immunophenotype analysis of renal and cardiac MSC-like populations supports strong congruence with bone marrow MSC despite maintenance of distinct identities. Stem Cell Res (2011) 1.45
Erythroid Krüppel-like factor directly activates the basic Krüppel-like factor gene in erythroid cells. Mol Cell Biol (2007) 1.45
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development. RNA (2009) 1.44
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Characterization of the OxyR regulon of Neisseria gonorrhoeae. Mol Microbiol (2006) 1.40
Rev-erbbeta regulates the expression of genes involved in lipid absorption in skeletal muscle cells: evidence for cross-talk between orphan nuclear receptors and myokines. J Biol Chem (2004) 1.36
High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites. Nucleic Acids Res (2008) 1.36
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. Bioinformatics (2009) 1.32
Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome. Genome Res (2010) 1.32
In vitro differentiation of murine embryonic stem cells toward a renal lineage. Differentiation (2007) 1.31
Human KLF17 is a new member of the Sp/KLF family of transcription factors. Genomics (2006) 1.31
miR-139-5p is a regulator of metastatic pathways in breast cancer. RNA (2013) 1.25
Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling. Int J Cancer (2014) 1.24
Targeting of CTCF to the nucleolus inhibits nucleolar transcription through a poly(ADP-ribosyl)ation-dependent mechanism. J Cell Sci (2006) 1.21
Identifying the molecular phenotype of renal progenitor cells. J Am Soc Nephrol (2004) 1.18
Generation of mice deficient in both KLF3/BKLF and KLF8 reveals a genetic interaction and a role for these factors in embryonic globin gene silencing. Mol Cell Biol (2013) 1.18
Identification of human embryonic stem cell surface markers by combined membrane-polysome translation state array analysis and immunotranscriptional profiling. Stem Cells (2009) 1.16
EKLF/KLF1 controls cell cycle entry via direct regulation of E2f2. J Biol Chem (2009) 1.13
Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq. Genome Res (2012) 1.13
Phasevarion mediated epigenetic gene regulation in Helicobacter pylori. PLoS One (2011) 1.13
Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases. Genome Biol (2006) 1.13
Identification of molecular compartments and genetic circuitry in the developing mammalian kidney. Development (2012) 1.13
Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs. Genome Biol (2014) 1.08
Macrophage activation and differentiation signals regulate schlafen-4 gene expression: evidence for Schlafen-4 as a modulator of myelopoiesis. PLoS One (2011) 1.08
Alternate transcription of the Toll-like receptor signaling cascade. Genome Biol (2006) 1.08
PerR controls Mn-dependent resistance to oxidative stress in Neisseria gonorrhoeae. Mol Microbiol (2006) 1.07
Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. PLoS One (2011) 1.07
Three fingers on the switch: Krüppel-like factor 1 regulation of γ-globin to β-globin gene switching. Curr Opin Hematol (2013) 1.06
Subcellular localization of mammalian type II membrane proteins. Traffic (2006) 1.06
Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study. BMC Bioinformatics (2012) 1.06
MicroRNA-182-5p targets a network of genes involved in DNA repair. RNA (2012) 1.06
Erythroid Kruppel-like factor regulates the G1 cyclin dependent kinase inhibitor p18INK4c. J Mol Biol (2007) 1.05
Whole genome sequence analysis of the first Australian OXA-48-producing outbreak-associated Klebsiella pneumoniae isolates: the resistome and in vivo evolution. PLoS One (2013) 1.04
Somatic point mutation calling in low cellularity tumors. PLoS One (2013) 1.03
Identification of novel markers of mouse fetal ovary development. PLoS One (2012) 1.03
KLF1 directly coordinates almost all aspects of terminal erythroid differentiation. IUBMB Life (2010) 1.03
Dynamic association of the mammalian insulator protein CTCF with centrosomes and the midbody. Exp Cell Res (2004) 1.03
Subfractionation of differentiating human embryonic stem cell populations allows the isolation of a mesodermal population enriched for intermediate mesoderm and putative renal progenitors. Stem Cells Dev (2010) 1.02
A mechanism for Ikaros regulation of human globin gene switching. Br J Haematol (2008) 1.00
Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH. PLoS One (2009) 0.95
Megakaryocyte-erythroid lineage promiscuity in EKLF null mouse blood. Haematologica (2009) 0.95
A high-throughput platform for lentiviral overexpression screening of the human ORFeome. PLoS One (2011) 0.94
Genomic organisation and regulation of murine alpha haemoglobin stabilising protein by erythroid Kruppel-like factor. Br J Haematol (2006) 0.94
Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline. Mol Cell Proteomics (2013) 0.94
The CACCC-binding protein KLF3/BKLF represses a subset of KLF1/EKLF target genes and is required for proper erythroid maturation in vivo. Mol Cell Biol (2012) 0.93
Osteonectin downregulates E-cadherin, induces osteopontin and focal adhesion kinase activity stimulating an invasive melanoma phenotype. Int J Cancer (2007) 0.93
Spatial gene expression in the T-stage mouse metanephros. Gene Expr Patterns (2006) 0.92
A high-throughput screening strategy for detecting CRISPR-Cas9 induced mutations using next-generation sequencing. BMC Genomics (2014) 0.92
PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases. BMC Bioinformatics (2006) 0.91
Understanding pancreatic cancer genomes. J Hepatobiliary Pancreat Sci (2013) 0.91
Mtx2 directs zebrafish morphogenetic movements during epiboly by regulating microfilament formation. Dev Biol (2007) 0.91