Identification of susceptibility genes for cancer in a genome-wide scan: results from the colon neoplasia sibling study.

PubWeight™: 1.10‹?› | Rank: Top 10%

🔗 View Article (PMC 2427227)

Published in Am J Hum Genet on February 28, 2008

Authors

Denise Daley1, Susan Lewis, Petra Platzer, Melissa MacMillen, Joseph Willis, Robert C Elston, Sanford D Markowitz, Georgia L Wiesner

Author Affiliations

1: Department of Epidemiology and Biostatistics, University Hospitals of Cleveland/Case Western Reserve University, Cleveland, OH 44106, USA. ddaley@mrl.ubc.ca

Articles citing this

Hereditary and familial colon cancer. Gastroenterology (2010) 4.15

Genetic heterogeneity in colorectal cancer associations between African and European americans. Gastroenterology (2010) 1.31

Distinct high resolution genome profiles of early onset and late onset colorectal cancer integrated with gene expression data identify candidate susceptibility loci. Mol Cancer (2010) 1.01

Colorectal cancer linkage on chromosomes 4q21, 8q13, 12q24, and 15q22. PLoS One (2012) 0.93

Multifunctional nanobeacon for imaging Thomsen-Friedenreich antigen-associated colorectal cancer. Int J Cancer (2012) 0.89

Linkage to chromosome 2q32.2-q33.3 in familial serrated neoplasia (Jass syndrome). Fam Cancer (2011) 0.87

Activating mutation in MET oncogene in familial colorectal cancer. BMC Cancer (2011) 0.85

Elevated levels of glycosylphosphatidylinositol (GPI) anchored proteins in plasma from human cancers detected by C. septicum alpha toxin. Cancer Biomark (2014) 0.83

Evidence of linkage to chromosomes 10p15.3-p15.1, 14q24.3-q31.1 and 9q33.3-q34.3 in non-syndromic colorectal cancer families. Eur J Hum Genet (2011) 0.82

Genes with relevance for early to late progression of colon carcinoma based on combined genomic and transcriptomic information from the same patients. Cancer Inform (2010) 0.80

Common genetic variants (rs4779584 and rs10318) at 15q13.3 contributes to colorectal adenoma and colorectal cancer susceptibility: evidence based on 22 studies. Mol Genet Genomics (2014) 0.80

Debate about TGFBR1 and the susceptibility to colorectal cancer. World J Gastrointest Oncol (2012) 0.79

Genome-wide linkage analyses of hereditary prostate cancer families with colon cancer provide further evidence for a susceptibility locus on 15q11-q14. Eur J Hum Genet (2010) 0.79

Binding of pro-prion to filamin A: by design or an unfortunate blunder. Oncogene (2010) 0.78

Genome-wide linkage analysis and tumoral characterization reveal heterogeneity in familial colorectal cancer type X. J Gastroenterol (2014) 0.78

Principles of genetic predisposition to malignancies. Hered Cancer Clin Pract (2008) 0.75

Program update and novel use of the DESPAIR program to design a genome-wide linkage study using relative pairs. Hum Hered (2009) 0.75

Evaluation of a novel fluorescent nanobeacon for targeted imaging of Thomsen-Friedenreich associated colorectal cancer. Int J Nanomedicine (2017) 0.75

Articles cited by this

Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nat Genet (1995) 49.77

Parametric and nonparametric linkage analysis: a unified multipoint approach. Am J Hum Genet (1996) 39.80

Environmental and heritable factors in the causation of cancer--analyses of cohorts of twins from Sweden, Denmark, and Finland. N Engl J Med (2000) 25.49

A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other. Am J Hum Genet (2004) 14.76

A case-control study of screening sigmoidoscopy and mortality from colorectal cancer. N Engl J Med (1992) 10.70

A comparison of sib-pair linkage tests for disease susceptibility loci. Genet Epidemiol (1985) 9.70

Haseman and Elston revisited. Genet Epidemiol (2000) 7.23

Systematic population-based assessment of cancer risk in first-degree relatives of cancer probands. J Natl Cancer Inst (1994) 6.27

Long-term risk of colorectal cancer after excision of rectosigmoid adenomas. N Engl J Med (1992) 5.18

Multiple colorectal adenomas, classic adenomatous polyposis, and germ-line mutations in MYH. N Engl J Med (2003) 4.88

Familial colorectal cancer in Ashkenazim due to a hypermutable tract in APC. Nat Genet (1997) 4.86

Colorectal cancer prevention 2000: screening recommendations of the American College of Gastroenterology. American College of Gastroenterology. Am J Gastroenterol (2000) 4.17

Cancer risk estimates for BRCA1 mutation carriers identified in a risk evaluation program. J Natl Cancer Inst (2002) 3.65

CHEK2 is a multiorgan cancer susceptibility gene. Am J Hum Genet (2004) 3.03

The prevalence rate and anatomic location of colorectal adenoma and cancer detected by colonoscopy in average-risk individuals aged 40-80 years. Am J Gastroenterol (2006) 2.34

Cancer risks for male carriers of germline mutations in BRCA1 or BRCA2: a review of the literature. J Clin Oncol (2004) 2.25

5-year incidence of adenomas after negative colonoscopy in asymptomatic average-risk persons [see comment]. Gastroenterology (1996) 2.24

Risk of colorectal cancer in the families of patients with adenomatous polyps. National Polyp Study Workgroup. N Engl J Med (1996) 2.14

Comparison of self-reported and database-linked family history of cancer data in a case-control study. Am J Epidemiol (1997) 2.14

Family history of cancer and colon cancer risk: the Utah Population Database. J Natl Cancer Inst (1994) 2.14

Retracted Metabolic regulation of SIRT1 transcription via a HIC1:CtBP corepressor complex. Proc Natl Acad Sci U S A (2007) 2.09

Evidence for extensive transmission distortion in the human genome. Am J Hum Genet (2003) 1.86

A subset of familial colorectal neoplasia kindreds linked to chromosome 9q22.2-31.2. Proc Natl Acad Sci U S A (2003) 1.84

Search for low penetrance alleles for colorectal cancer through a scan of 1467 non-synonymous SNPs in 2575 cases and 2707 controls with validation by kin-cohort analysis of 14 704 first-degree relatives. Hum Mol Genet (2006) 1.84

Heterozygous disruption of Hic1 predisposes mice to a gender-dependent spectrum of malignant tumors. Nat Genet (2003) 1.77

Cancer genetics: colorectal cancer as a model. J Hum Genet (2006) 1.64

Whole genome amplification and high-throughput allelotyping identified five distinct deletion regions on chromosomes 5 and 6 in microdissected early-stage ovarian tumors. Cancer Res (2001) 1.61

BRCA1 and BRCA2 pathways and the risk of cancers other than breast or ovarian. MedGenMed (2005) 1.58

Metachronous colon cancer in persons who have had a large adenomatous polyp. Am J Gastroenterol (1996) 1.56

Mathematical assumptions versus biological reality: myths in affected sib pair linkage analysis. Am J Hum Genet (2004) 1.52

An update on the genetics of colorectal cancer. Hum Mol Genet (2004) 1.39

A study of linkage and association of body mass index in the Old Order Amish. Am J Med Genet C Semin Med Genet (2003) 1.38

Evidence of linkage to chromosome 9q22.33 in colorectal cancer kindreds from the United Kingdom. Cancer Res (2006) 1.37

Body mass and colorectal cancer risk in the NIH-AARP cohort. Am J Epidemiol (2007) 1.32

Compilation of published comparative genomic hybridization studies. Cancer Genet Cytogenet (2002) 1.29

Lifestyle as a predictor for colonic neoplasia in asymptomatic individuals. BMC Gastroenterol (2006) 1.28

Inherited susceptibility to colorectal adenomas and carcinomas: evidence for a new predisposition gene on 15q14-q22. Gastroenterology (1999) 1.26

An ancestral Ashkenazi haplotype at the HMPS/CRAC1 locus on 15q13-q14 is associated with hereditary mixed polyposis syndrome. Am J Hum Genet (2003) 1.21

Linkage analysis in a large Swedish family supports the presence of a susceptibility locus for adenoma and colorectal cancer on chromosome 9q22.32-31.1. J Med Genet (2006) 1.18

Role of heredity in multiple primary cancer. Cancer (1977) 1.12

Cancer risks in carriers of the BRCA1/2 Ashkenazi founder mutations. J Med Genet (2007) 1.09

Identification of the p53 family-responsive element in the promoter region of the tumor suppressor gene hypermethylated in cancer 1. Oncogene (2006) 1.06

Genetic profiling of chromosome 1 in breast cancer: mapping of regions of gains and losses and identification of candidate genes on 1q. Br J Cancer (2006) 1.06

Mapping of hereditary mixed polyposis syndrome (HMPS) to chromosome 10q23 by genomewide high-density single nucleotide polymorphism (SNP) scan and identification of BMPR1A loss of function. J Med Genet (2006) 1.03

Sib-pairs in multifactorial disorders: the sib-similarity problem. Clin Genet (2003) 1.01

Investigation of pathogenic mechanisms in multiple colorectal adenoma patients without germline APC or MYH/MUTYH mutations. Br J Cancer (2007) 0.99

Aspirin may be more effective in preventing colorectal adenomas in patients with higher BMI (United States). Cancer Causes Control (2006) 0.95

Is hEXO1 a cancer predisposing gene? Mol Cancer Res (2004) 0.95

Loss of heterozygosity on chromosome 5q in ovarian cancer is frequently accompanied by TP53 mutation and identifies a tumour suppressor gene locus at 5q13.1-21. Br J Cancer (1996) 0.92

Impaired glucose metabolism in colorectal cancer. Scand J Gastroenterol (2006) 0.89

Single nucleotide polymorphisms in the EXO1 gene and risk of colorectal cancer in a Japanese population. Carcinogenesis (2004) 0.87

Apparent Mendelian inheritance of breast and colorectal cancer: chance, genetic heterogeneity or a new gene? Fam Cancer (2001) 0.85

BRCA1 and BRCA2 gene mutations: decision-making dilemmas concerning testing and management. Obstet Gynecol Surv (2000) 0.83

Colorectal adenomatous polyposis Associated with MYH mutations: genotype and phenotype characteristics. Dis Colon Rectum (2007) 0.83

Mapping and genome sequence analysis of chromosome 5 regions involved in bladder cancer progression. Lab Invest (2001) 0.82

Multiple primary cancers of the colon, breast and skin (melanoma) as models for polygenic cancers. Int J Cancer (2001) 0.81

Articles by these authors

The consensus coding sequences of human breast and colorectal cancers. Science (2006) 60.02

The genomic landscapes of human breast and colorectal cancers. Science (2007) 38.12

International network of cancer genome projects. Nature (2010) 20.35

Comparative lesion sequencing provides insights into tumor evolution. Proc Natl Acad Sci U S A (2008) 10.52

Epigenetic inactivation of SFRP genes allows constitutive WNT signaling in colorectal cancer. Nat Genet (2004) 7.78

Breast-cancer stromal cells with TP53 mutations and nodal metastases. N Engl J Med (2007) 6.47

Optimal two-stage genotyping in population-based association studies. Genet Epidemiol (2003) 6.01

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells. Nature (2010) 4.53

A generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions with application to nicotine dependence. Am J Hum Genet (2007) 4.46

Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc Natl Acad Sci U S A (2008) 4.13

Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders. Proc Natl Acad Sci U S A (2010) 3.78

Detection in fecal DNA of colon cancer-specific methylation of the nonexpressed vimentin gene. J Natl Cancer Inst (2005) 3.73

Improved power by use of a weighted score test for linkage disequilibrium mapping. Am J Hum Genet (2006) 3.36

Adding further power to the Haseman and Elston method for detecting linkage in larger sibships: weighting sums and differences. Hum Hered (2003) 3.33

Genetic test evaluation: information needs of clinicians, policy makers, and the public. Am J Epidemiol (2002) 3.23

Choosing an optimal method to combine P-values. Stat Med (2009) 3.15

The genetic basis of complex traits: rare variants or "common gene, common disease"? Methods Mol Biol (2007) 3.01

A unified association analysis approach for family and unrelated samples correcting for stratification. Am J Hum Genet (2008) 3.00

Dissection of genomewide-scan data in extended families reveals a major locus and oligogenic susceptibility for age-related macular degeneration. Am J Hum Genet (2003) 2.92

Detecting rare variants for complex traits using family and unrelated data. Genet Epidemiol (2010) 2.80

Ethnic- and gender-specific association of the nicotinic acetylcholine receptor alpha4 subunit gene (CHRNA4) with nicotine dependence. Hum Mol Genet (2005) 2.80

Molecular classification of patients with unexplained hamartomatous and hyperplastic polyposis. JAMA (2005) 2.59

Silence of chromosomal amplifications in colon cancer. Cancer Res (2002) 2.58

Mst1 and Mst2 protein kinases restrain intestinal stem cell proliferation and colonic tumorigenesis by inhibition of Yes-associated protein (Yap) overabundance. Proc Natl Acad Sci U S A (2011) 2.54

A murine model of chronic inflammation-induced intestinal fibrosis down-regulated by antisense NF-kappa B. Gastroenterology (2003) 2.53

The noncoding RNA, miR-126, suppresses the growth of neoplastic cells by targeting phosphatidylinositol 3-kinase signaling and is frequently lost in colon cancers. Genes Chromosomes Cancer (2008) 2.52

Three classes of genes mutated in colorectal cancers with chromosomal instability. Cancer Res (2004) 2.51

Genetic and epigenetic alterations in colon cancer. Annu Rev Genomics Hum Genet (2002) 2.43

15-Hydroxyprostaglandin dehydrogenase, a COX-2 oncogene antagonist, is a TGF-beta-induced suppressor of human gastrointestinal cancers. Proc Natl Acad Sci U S A (2004) 2.42

15-Hydroxyprostaglandin dehydrogenase is an in vivo suppressor of colon tumorigenesis. Proc Natl Acad Sci U S A (2006) 2.41

Premature myocardial infarction novel susceptibility locus on chromosome 1P34-36 identified by genomewide linkage analysis. Am J Hum Genet (2004) 2.36

Sensitive digital quantification of DNA methylation in clinical samples. Nat Biotechnol (2009) 2.34

Linkage analysis of a complex disease through use of admixed populations. Am J Hum Genet (2004) 2.21

Attention deficit disorder in adults. Ann Clin Psychiatry (2002) 2.20

Using the optimal receiver operating characteristic curve to design a predictive genetic test, exemplified with type 2 diabetes. Am J Hum Genet (2008) 2.20

Single- and multilocus allelic variants within the GABA(B) receptor subunit 2 (GABAB2) gene are significantly associated with nicotine dependence. Am J Hum Genet (2005) 2.18

A powerful method of combining measures of association and Hardy-Weinberg disequilibrium for fine-mapping in case-control studies. Stat Med (2006) 2.18

Epigenomic enhancer profiling defines a signature of colon cancer. Science (2012) 2.15

Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits. Genome Res (2013) 2.14

Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions. Bioinformatics (2006) 2.08

DNMT1 stability is regulated by proteins coordinating deubiquitination and acetylation-driven ubiquitination. Sci Signal (2010) 2.04

Whole genome scan for obstructive sleep apnea and obesity in African-American families. Am J Respir Crit Care Med (2004) 2.03

SLC5A8, a sodium transporter, is a tumor suppressor gene silenced by methylation in human colon aberrant crypt foci and cancers. Proc Natl Acad Sci U S A (2003) 2.01

SNP arrays in heterogeneous tissue: highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples. Am J Hum Genet (2008) 2.00

Germline mutations and variants in the succinate dehydrogenase genes in Cowden and Cowden-like syndromes. Am J Hum Genet (2008) 1.96

The Family Investigation of Nephropathy and Diabetes (FIND): design and methods. J Diabetes Complications (2005) 1.87

Self-reported race and genetic admixture. N Engl J Med (2006) 1.85

Human SHPRH suppresses genomic instability through proliferating cell nuclear antigen polyubiquitination. J Cell Biol (2006) 1.85

A subset of familial colorectal neoplasia kindreds linked to chromosome 9q22.2-31.2. Proc Natl Acad Sci U S A (2003) 1.84

Polyubiquitination of proliferating cell nuclear antigen by HLTF and SHPRH prevents genomic instability from stalled replication forks. Proc Natl Acad Sci U S A (2008) 1.84

The meaning of interaction. Hum Hered (2010) 1.83

EPHA2 is associated with age-related cortical cataract in mice and humans. PLoS Genet (2009) 1.82

A whole-genome scan for obstructive sleep apnea and obesity. Am J Hum Genet (2002) 1.81

Changes in human immunodeficiency virus type 1 Gag at positions L449 and P453 are linked to I50V protease mutants in vivo and cause reduction of sensitivity to amprenavir and improved viral fitness in vitro. J Virol (2002) 1.80

Genome-wide scans for diabetic nephropathy and albuminuria in multiethnic populations: the family investigation of nephropathy and diabetes (FIND). Diabetes (2007) 1.79

Gain of interaction with IRS1 by p110α-helical domain mutants is crucial for their oncogenic functions. Cancer Cell (2013) 1.74

BCL9 promotes tumor progression by conferring enhanced proliferative, metastatic, and angiogenic properties to cancer cells. Cancer Res (2009) 1.74

PRL-3 expression in metastatic cancers. Clin Cancer Res (2003) 1.73

NAD+-dependent 15-hydroxyprostaglandin dehydrogenase regulates levels of bioactive lipids in non-small cell lung cancer. Cancer Prev Res (Phila) (2008) 1.71

Frequency of germline genomic homozygosity associated with cancer cases. JAMA (2008) 1.67

The impact of resection margin status and postoperative CA19-9 levels on survival and patterns of recurrence after postoperative high-dose radiotherapy with 5-FU-based concurrent chemotherapy for resectable pancreatic cancer. Am J Clin Oncol (2008) 1.67

Report of Banbury Summit meeting on training of physicians in medical genetics, October 20-22, 2004. Genet Med (2005) 1.66

15-Hydroxyprostaglandin dehydrogenase inactivation as a mechanism of resistance to celecoxib chemoprevention of colon tumors. Proc Natl Acad Sci U S A (2009) 1.65

Genome-wide scan for estimated glomerular filtration rate in multi-ethnic diabetic populations: the Family Investigation of Nephropathy and Diabetes (FIND). Diabetes (2007) 1.61

Aberrantly methylated CDKN2A, MGMT, and MLH1 in colon polyps and in fecal DNA from patients with colorectal polyps. Clin Cancer Res (2005) 1.59

Attitudes toward genetic research review: results from a national survey of professionals involved in human subjects protection. J Empir Res Hum Res Ethics (2010) 1.59

Differential expression of PTEN-targeting microRNAs miR-19a and miR-21 in Cowden syndrome. Am J Hum Genet (2008) 1.59

Evidence of selection for clones having genetic inactivation of the activin A type II receptor (ACVR2) gene in gastrointestinal cancers. Cancer Res (2003) 1.58

Aberrant vimentin methylation is characteristic of upper gastrointestinal pathologies. Cancer Epidemiol Biomarkers Prev (2012) 1.57

A combinatorial approach to detecting gene-gene and gene-environment interactions in family studies. Am J Hum Genet (2008) 1.57

Clinical trial resources on the internet must be designed to reach underrepresented minorities. Cancer J (2007) 1.56

Improving power in contrasting linkage-disequilibrium patterns between cases and controls. Am J Hum Genet (2007) 1.55

Focus on colon cancer. Cancer Cell (2002) 1.54

A whole-genome screen of a quantitative trait of age-related maculopathy in sibships from the Beaver Dam Eye Study. Am J Hum Genet (2003) 1.53

The human tumour suppressor gene SLC5A8 expresses a Na+-monocarboxylate cotransporter. J Physiol (2004) 1.53

Inactivating germ-line and somatic mutations in polypeptide N-acetylgalactosaminyltransferase 12 in human colon cancers. Proc Natl Acad Sci U S A (2009) 1.51

Aspirin and colon cancer--targeting prevention? N Engl J Med (2007) 1.50

A genome-wide scan to identify loci for smoking rate in the Framingham Heart Study population. BMC Genet (2003) 1.50

Genetic/familial high-risk assessment: breast and ovarian, version 1.2014. J Natl Compr Canc Netw (2014) 1.48