Published in BMC Genet on April 19, 2010
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Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One (2011) 1.82
Infant growth restriction is associated with distinct patterns of DNA methylation in human placentas. Epigenetics (2011) 1.44
Ontogenetic de novo copy number variations (CNVs) as a source of genetic individuality: studies on two families with MZD twins for schizophrenia. PLoS One (2011) 1.28
A survey for novel imprinted genes in the mouse placenta by mRNA-seq. Genetics (2011) 1.24
Genome-wide assessment of imprinted expression in human cells. Genome Biol (2011) 1.22
A genome-wide approach reveals novel imprinted genes expressed in the human placenta. Epigenetics (2012) 1.08
Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies. Epigenetics Chromatin (2011) 1.07
Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids. Comp Biochem Physiol C Toxicol Pharmacol (2011) 1.05
DNMT1 and AIM1 Imprinting in human placenta revealed through a genome-wide screen for allele-specific DNA methylation. BMC Genomics (2013) 1.02
Methylation profiling in individuals with uniparental disomy identifies novel differentially methylated regions on chromosome 15. Genome Res (2010) 0.97
Characterization of whole-genome autosomal differences of DNA methylation between men and women. Epigenetics Chromatin (2015) 0.90
Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta. Epigenetics (2014) 0.87
The placental imprintome and imprinted gene function in the trophoblast glycogen cell lineage. Reprod Biomed Online (2012) 0.86
Imprinting at the PLAGL1 domain is contained within a 70-kb CTCF/cohesin-mediated non-allelic chromatin loop. Nucleic Acids Res (2013) 0.84
Identifying breast cancer risk loci by global differential allele-specific expression (DASE) analysis in mammary epithelial transcriptome. BMC Genomics (2012) 0.84
Quantitative allele-specific expression and DNA methylation analysis of H19, IGF2 and IGF2R in the human placenta across gestation reveals H19 imprinting plasticity. PLoS One (2012) 0.83
Next-generation DNA sequencing-based assay for measuring allelic expression imbalance (AEI) of candidate neuropsychiatric disorder genes in human brain. BMC Genomics (2011) 0.82
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay. BMC Bioinformatics (2010) 0.79
Tissue-specific and minor inter-individual variation in imprinting of IGF2R is a common feature of Bos taurus Concepti and not correlated with fetal weight. PLoS One (2013) 0.79
A haplotype-based normalization technique for the analysis and detection of allele specific expression. BMC Bioinformatics (2016) 0.77
Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. Genetics (2016) 0.75
Allele-specific expression of mutated in colorectal cancer (MCC) gene and alternative susceptibility to colorectal cancer in schizophrenia. Sci Rep (2016) 0.75
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Population genomics of human gene expression. Nat Genet (2007) 24.49
Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science (2007) 23.38
Identification of hundreds of conserved and nonconserved human microRNAs. Nat Genet (2005) 15.96
MethPrimer: designing primers for methylation PCRs. Bioinformatics (2002) 14.48
Genomic imprinting: parental influence on the genome. Nat Rev Genet (2001) 11.50
Allelic variation in human gene expression. Science (2002) 11.42
Common regulatory variation impacts gene expression in a cell type-dependent manner. Science (2009) 11.28
A genome-wide scalable SNP genotyping assay using microarray technology. Nat Genet (2005) 7.64
Widespread monoallelic expression on human autosomes. Science (2007) 7.12
Cellular localization of immunoglobulins with different allotypic specificities in rabbit lymphoid tissues. J Exp Med (1965) 6.93
Diversity of microRNAs in human and chimpanzee brain. Nat Genet (2006) 6.57
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Allelic inactivation regulates olfactory receptor gene expression. Cell (1994) 5.93
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In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading. Nat Genet (2003) 5.10
A census of mammalian imprinting. Trends Genet (2005) 4.84
Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. PLoS Genet (2008) 3.92
Computational and experimental identification of novel human imprinted genes. Genome Res (2007) 3.50
Analysis of allelic differential expression in human white blood cells. Genome Res (2006) 3.07
Illumina universal bead arrays. Methods Enzymol (2006) 2.88
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Genome-wide prediction of imprinted murine genes. Genome Res (2005) 2.76
Physiological functions of imprinted genes. J Cell Physiol (2002) 2.58
Gene expression patterns in human placenta. Proc Natl Acad Sci U S A (2006) 2.33
SNP-specific array-based allele-specific expression analysis. Genome Res (2008) 2.30
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Limited evolutionary conservation of imprinting in the human placenta. Proc Natl Acad Sci U S A (2006) 2.08
Polar overdominance at the ovine callipyge locus. Science (1996) 1.96
High-throughput MALDI-TOF discovery of genomic sequence polymorphisms. Genome Res (2004) 1.92
Phactrs 1-4: A family of protein phosphatase 1 and actin regulatory proteins. Proc Natl Acad Sci U S A (2004) 1.86
Imprinted genes in the placenta--a review. Placenta (2005) 1.77
An imprinted locus associated with transient neonatal diabetes mellitus. Hum Mol Genet (2000) 1.73
Genome-wide analysis reveals a complex pattern of genomic imprinting in mice. PLoS Genet (2008) 1.63
Molecular evolution of a primate-specific microRNA family. Mol Biol Evol (2008) 1.63
A genome-wide approach to identifying novel-imprinted genes. Hum Genet (2007) 1.55
Epigenetic heterogeneity at imprinted loci in normal populations. Biochem Biophys Res Commun (2001) 1.47
Impaired glucose homeostasis in transgenic mice expressing the human transient neonatal diabetes mellitus locus, TNDM. J Clin Invest (2004) 1.44
Genomic imprinting effects on adult body composition in mice. Proc Natl Acad Sci U S A (2008) 1.31
Epigenetic control of the expression of a primate-specific microRNA cluster in human cancer cells. Epigenetics (2009) 1.29
Phactr4 regulates neural tube and optic fissure closure by controlling PP1-, Rb-, and E2F1-regulated cell-cycle progression. Dev Cell (2007) 1.21
Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis. Nucleic Acids Res (2008) 1.19
A sensitive functional assay reveals frequent loss of genomic imprinting in human placenta. Epigenetics (2008) 1.17
Sequence-based bioinformatic prediction and QUASEP identify genomic imprinting of the KCNK9 potassium channel gene in mouse and human. Hum Mol Genet (2007) 1.10
An epigenetic approach to cancer etiology. Cancer J (2007) 1.07
Scapinin, a putative protein phosphatase-1 regulatory subunit associated with the nuclear nonchromatin structure. J Biol Chem (2003) 1.06
Scapinin, the protein phosphatase 1 binding protein, enhances cell spreading and motility by interacting with the actin cytoskeleton. PLoS One (2009) 0.95
Maximum likelihood inference of imprinting and allele-specific expression from EST data. Bioinformatics (2006) 0.90
Paramutation-like effects at the mouse scapinin (Phactr3) locus. J Mol Biol (2008) 0.78
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
A second generation human haplotype map of over 3.1 million SNPs. Nature (2007) 85.39
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007) 75.09
Integrating common and rare genetic variation in diverse human populations. Nature (2010) 32.30
Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. Nat Genet (2008) 30.20
Population genomics of human gene expression. Nat Genet (2007) 24.49
Genomewide association analysis of coronary artery disease. N Engl J Med (2007) 24.38
Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science (2007) 23.38
Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. Nat Genet (2010) 23.08
Detecting recent positive selection in the human genome from haplotype structure. Nature (2002) 22.00
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol (2008) 21.72
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature (2012) 20.47
Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature (2010) 20.01
New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk. Nat Genet (2010) 17.89
Genome-wide detection and characterization of positive selection in human populations. Nature (2007) 17.27
Genome-wide associations of gene expression variation in humans. PLoS Genet (2005) 17.27
The fine-scale structure of recombination rate variation in the human genome. Science (2004) 17.05
Common variants near MC4R are associated with fat mass, weight and risk of obesity. Nat Genet (2008) 15.94
A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nat Genet (2006) 15.63
Transcriptome genetics using second generation sequencing in a Caucasian population. Nature (2010) 14.85
Ensembl 2011. Nucleic Acids Res (2010) 14.68
Ensembl 2012. Nucleic Acids Res (2011) 14.55
Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility. Nat Genet (2007) 13.74
Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat Genet (2011) 13.25
Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk. Nature (2011) 13.25
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. Nature (2011) 13.23
Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants. Nat Genet (2007) 12.62
Genome-wide association study identifies eight loci associated with blood pressure. Nat Genet (2009) 12.44
Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature (2010) 12.27
A systematic survey of loss-of-function variants in human protein-coding genes. Science (2012) 12.25
Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants. Nat Genet (2009) 12.19
Complete MHC haplotype sequencing for common disease gene mapping. Genome Res (2004) 12.09
Ensembl 2013. Nucleic Acids Res (2012) 11.70
Common regulatory variation impacts gene expression in a cell type-dependent manner. Science (2009) 11.28
Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes. Nat Genet (2012) 11.09
Variants in MTNR1B influence fasting glucose levels. Nat Genet (2008) 10.85
Ensembl's 10th year. Nucleic Acids Res (2009) 10.82
Signatures of mutation and selection in the cancer genome. Nature (2010) 9.75
High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet (2008) 9.68
Convergent adaptation of human lactase persistence in Africa and Europe. Nat Genet (2006) 9.44
Transcriptome and genome sequencing uncovers functional variation in humans. Nature (2013) 8.89
A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21. Nat Genet (2007) 8.50
A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1. Nat Genet (2010) 8.48
A genotype calling algorithm for the Illumina BeadArray platform. Bioinformatics (2007) 8.03
Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution. Nat Genet (2010) 7.94
Newly identified genetic risk variants for celiac disease related to the immune response. Nat Genet (2008) 7.63
Large-scale association analysis identifies new risk loci for coronary artery disease. Nat Genet (2012) 7.59
Genome-wide association analysis identifies 13 new risk loci for schizophrenia. Nat Genet (2013) 7.44
An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22. Genomics (2002) 7.10
A first-generation linkage disequilibrium map of human chromosome 22. Nature (2002) 7.03
Mapping cis- and trans-regulatory effects across multiple tissues in twins. Nat Genet (2012) 6.97
Genetically distinct subsets within ANCA-associated vasculitis. N Engl J Med (2012) 6.93
Multiple common variants for celiac disease influencing immune gene expression. Nat Genet (2010) 6.90
Autophagy mediates the mitotic senescence transition. Genes Dev (2009) 6.80
MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype. Genome Biol (2007) 6.41
Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease. Nat Genet (2011) 6.36
A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. Nat Genet (2009) 6.31
The metabochip, a custom genotyping array for genetic studies of metabolic, cardiovascular, and anthropometric traits. PLoS Genet (2012) 6.15
beadarray: R classes and methods for Illumina bead-based data. Bioinformatics (2007) 6.08
The architecture of gene regulatory variation across multiple human tissues: the MuTHER study. PLoS Genet (2011) 5.95
Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution. PLoS Genet (2009) 5.81
Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics. Proc Natl Acad Sci U S A (2013) 5.68
The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res (2007) 5.67
Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility. Nat Genet (2011) 5.56
Loss-of-function mutations in APOC3, triglycerides, and coronary disease. N Engl J Med (2014) 5.47
Patterns of cis regulatory variation in diverse human populations. PLoS Genet (2012) 5.28
Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia. Nat Genet (2013) 5.22
Repeated replication and a prospective meta-analysis of the association between chromosome 9p21.3 and coronary artery disease. Circulation (2008) 5.20
Inheritance of coronary artery disease in men: an analysis of the role of the Y chromosome. Lancet (2012) 5.16
New susceptibility locus for coronary artery disease on chromosome 3q22.3. Nat Genet (2009) 5.12
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines. PLoS Genet (2008) 5.08
Genetic determinants of ulcerative colitis include the ECM1 locus and five loci implicated in Crohn's disease. Nat Genet (2008) 4.96
Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations. PLoS Genet (2010) 4.95
Inactivating mutations in NPC1L1 and protection from coronary heart disease. N Engl J Med (2014) 4.94
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). Genome Res (2008) 4.84
Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nat Genet (2005) 4.79
Quantification of the completeness of follow-up. Lancet (2002) 4.77
Large-scale association analyses identify new loci influencing glycemic traits and provide insight into the underlying biological pathways. Nat Genet (2012) 4.73
GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Science (2013) 4.71
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer. Genome Biol (2007) 4.70
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Genomics (2007) 4.62