Published in Genome Biol on October 20, 2011
Draft genome sequence of the mulberry tree Morus notabilis. Nat Commun (2013) 1.38
Draft genome sequence of the rubber tree Hevea brasiliensis. BMC Genomics (2013) 1.35
The draft genome sequence of European pear (Pyrus communis L. 'Bartlett'). PLoS One (2014) 1.23
Transcriptome analysis of bitter acid biosynthesis and precursor pathways in hop (Humulus lupulus). BMC Plant Biol (2013) 1.22
Widespread natural variation of DNA methylation within angiosperms. Genome Biol (2016) 1.06
A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica. BMC Genomics (2012) 1.01
P-MITE: a database for plant miniature inverted-repeat transposable elements. Nucleic Acids Res (2013) 0.99
Identification of olivetolic acid cyclase from Cannabis sativa reveals a unique catalytic route to plant polyketides. Proc Natl Acad Sci U S A (2012) 0.97
RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis. BMC Res Notes (2014) 0.95
The Genetic Structure of Marijuana and Hemp. PLoS One (2015) 0.94
The draft genome of Primula veris yields insights into the molecular basis of heterostyly. Genome Biol (2015) 0.94
Integrated -omics: a powerful approach to understanding the heterogeneous lignification of fibre crops. Int J Mol Sci (2013) 0.91
Diversity analysis in Cannabis sativa based on large-scale development of expressed sequence tag-derived simple sequence repeat markers. PLoS One (2014) 0.91
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics (2013) 0.91
Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants. Front Plant Sci (2015) 0.90
Target or barrier? The cell wall of early- and later-diverging plants vs cadmium toxicity: differences in the response mechanisms. Front Plant Sci (2015) 0.89
Cannabis sativa: The Plant of the Thousand and One Molecules. Front Plant Sci (2016) 0.86
The tomato genome: implications for plant breeding, genomics and evolution. Genome Biol (2012) 0.85
Evolution of plant genome architecture. Genome Biol (2016) 0.84
Molecular cytogenetic characterization of the dioecious Cannabis sativa with an XY chromosome sex determination system. PLoS One (2014) 0.84
Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas. Front Plant Sci (2015) 0.81
Studying Secondary Growth and Bast Fiber Development: The Hemp Hypocotyl Peeks behind the Wall. Front Plant Sci (2016) 0.81
De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.). BMC Genomics (2015) 0.80
Extreme expansion of NBS-encoding genes in Rosaceae. BMC Genet (2015) 0.80
The temporal foliar transcriptome of the perennial C3 desert plant Rhazya stricta in its natural environment. BMC Plant Biol (2014) 0.80
Turning Over a New Leaf: Cannabinoid and Endocannabinoid Modulation of Immune Function. J Neuroimmune Pharmacol (2015) 0.80
A Revolution in Plant Metabolism: Genome-Enabled Pathway Discovery. Plant Physiol (2015) 0.79
Characterization of Cannabis sativa allergens. Ann Allergy Asthma Immunol (2013) 0.79
Identification of Reference Genes for RT-qPCR Data Normalization in Cannabis sativa Stem Tissues. Int J Mol Sci (2016) 0.79
Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement. Genet Res Int (2015) 0.78
Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants. PLoS One (2015) 0.78
In silico gene expression profiling in Cannabis sativa. F1000Res (2017) 0.77
The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications. Biotechnol Biofuels (2015) 0.77
A Belated Green Revolution for Cannabis: Virtual Genetic Resources to Fast-Track Cultivar Development. Front Plant Sci (2016) 0.77
De Novo Assembly and Transcriptome Characterization of Canine Retina Using High-Throughput Sequencing. Genet Res Int (2015) 0.76
Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes. Genome Biol (2016) 0.76
DPTEdb, an integrative database of transposable elements in dioecious plants. Database (Oxford) (2016) 0.76
Cannabis microbiome sequencing reveals several mycotoxic fungi native to dispensary grade Cannabis flowers. F1000Res (2015) 0.76
Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery. Appl Plant Sci (2016) 0.75
Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture. Trop Life Sci Res (2016) 0.75
Renaissance in phytomedicines: promising implications of NGS technologies. Planta (2016) 0.75
Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae). BMC Genomics (2017) 0.75
Genome-wide Annotation and Comparative Analysis of Long Terminal Repeat Retrotransposons between Pear Species of P. bretschneideri and P. Communis. Sci Rep (2015) 0.75
How hemp got high. Genome Biol (2011) 0.75
PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets. Cancer Inform (2015) 0.75
The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae). DNA Res (2017) 0.75
The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae). DNA Res (2017) 0.75
Use of laser microdissection for the construction of Humulusjaponicus Siebold et Zuccarini, 1846 (Cannabaceae) sex chromosome-specific DNA library and cytogenetics analysis. Comp Cytogenet (2014) 0.75
Botany: The cultivation of weed. Nature (2015) 0.75
Broad-Scale Genetic Diversity of Cannabis for Forensic Applications. PLoS One (2017) 0.75
Terpene synthases from Cannabis sativa. PLoS One (2017) 0.75
Transcriptome differences between fiber-type and seed-type Cannabis sativa variety exposed to salinity. Physiol Mol Biol Plants (2016) 0.75
In silico discovery of terpenoid metabolism in Cannabis sativa. F1000Res (2017) 0.75
Identification of fasciclin-like arabinogalactan proteins in textile hemp (Cannabis sativa L.): in silico analyses and gene expression patterns in different tissues. BMC Genomics (2017) 0.75
Overview of Next-generation Sequencing Platforms Used in Published Draft Plant Genomes in Light of Genotypization of Immortelle Plant (Helichrysium Arenarium). Med Arch (2017) 0.75
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12
The Sequence Alignment/Map format and SAMtools. Bioinformatics (2009) 232.39
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
BLAT--the BLAST-like alignment tool. Genome Res (2002) 126.78
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
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De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics (2006) 43.68
ABySS: a parallel assembler for short read sequence data. Genome Res (2009) 43.20
Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci U S A (2002) 25.47
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Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet (1999) 14.96
The PANTHER database of protein families, subfamilies, functions and pathways. Nucleic Acids Res (2005) 13.37
Aggressive assembly of pyrosequencing reads with mates. Bioinformatics (2008) 11.01
The molecular genetics of crop domestication. Cell (2006) 6.71
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res (2004) 4.31
Smoked cannabis for chronic neuropathic pain: a randomized controlled trial. CMAJ (2010) 3.46
Genetic structure and domestication history of the grape. Proc Natl Acad Sci U S A (2011) 2.89
Potency trends of Δ9-THC and other cannabinoids in confiscated cannabis preparations from 1993 to 2008. J Forensic Sci (2010) 2.56
Non-psychotropic plant cannabinoids: new therapeutic opportunities from an ancient herb. Trends Pharmacol Sci (2009) 2.32
Molecular cloning, expression, and induction of berberine bridge enzyme, an enzyme essential to the formation of benzophenanthridine alkaloids in the response of plants to pathogenic attack. Proc Natl Acad Sci U S A (1991) 2.27
Chemical constituents of marijuana: the complex mixture of natural cannabinoids. Life Sci (2005) 2.13
Rapid genomic characterization of the genus vitis. PLoS One (2010) 2.04
Sex chromosomes in land plants. Annu Rev Plant Biol (2011) 1.85
Taming THC: potential cannabis synergy and phytocannabinoid-terpenoid entourage effects. Br J Pharmacol (2011) 1.81
Early medical use of cannabis. Nature (1993) 1.80
A rapid and efficient method for purifying high quality total RNA from peaches (Prunus persica) for functional genomics analyses. Biol Res (2005) 1.73
Genetic variation in hemp and marijuana (Cannabis sativa L.) according to amplified fragment length polymorphisms. J Forensic Sci (2006) 1.46
Potency of delta 9-THC and other cannabinoids in cannabis in England in 2005: implications for psychoactivity and pharmacology. J Forensic Sci (2008) 1.44
Global studies of cell type-specific gene expression in plants. Annu Rev Plant Biol (2006) 1.33
The plastidial MEP pathway: unified nomenclature and resources. Trends Plant Sci (2008) 1.33
Phytochemical and genetic analyses of ancient cannabis from Central Asia. J Exp Bot (2008) 1.31
A new type of peroxisomal acyl-coenzyme A synthetase from Arabidopsis thaliana has the catalytic capacity to activate biosynthetic precursors of jasmonic acid. J Biol Chem (2005) 1.22
The inheritance of chemical phenotype in Cannabis sativa L. Genetics (2003) 1.22
Antibacterial cannabinoids from Cannabis sativa: a structure-activity study. J Nat Prod (2008) 1.13
The gene controlling marijuana psychoactivity: molecular cloning and heterologous expression of Delta1-tetrahydrocannabinolic acid synthase from Cannabis sativa L. J Biol Chem (2004) 1.11
Biosynthesis of cannabinoids. Incorporation experiments with (13)C-labeled glucoses. Eur J Biochem (2001) 1.11
Cannabidiolic-acid synthase, the chemotype-determining enzyme in the fiber-type Cannabis sativa. FEBS Lett (2007) 1.06
Plant cannabinoids: a neglected pharmacological treasure trove. Br J Pharmacol (2005) 1.00
Non-psychoactive cannabinoids modulate the descending pathway of antinociception in anaesthetized rats through several mechanisms of action. Br J Pharmacol (2011) 0.96
Characterization of olivetol synthase, a polyketide synthase putatively involved in cannabinoid biosynthetic pathway. FEBS Lett (2009) 0.93
Identification of candidate genes affecting Delta9-tetrahydrocannabinol biosynthesis in Cannabis sativa. J Exp Bot (2009) 0.92
Role of fluorescence in situ hybridization in sequencing the tomato genome. Cytogenet Genome Res (2009) 0.92
Pharmacological evaluation of the natural constituent of Cannabis sativa, cannabichromene and its modulation by Δ(9)-tetrahydrocannabinol. Drug Alcohol Depend (2010) 0.89
Whole plant cannabis extracts in the treatment of spasticity in multiple sclerosis: a systematic review. BMC Neurol (2009) 0.88
Purification and characterization of cannabichromenic acid synthase from Cannabis sativa. Phytochemistry (1998) 0.87
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature (2006) 24.29
A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet (2007) 12.21
The DNA-encoded nucleosome organization of a eukaryotic genome. Nature (2008) 11.41
Diversity and complexity in DNA recognition by transcription factors. Science (2009) 9.07
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell (2007) 8.43
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics (2002) 8.01
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell (2008) 7.93
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform. Mol Cell (2004) 7.32
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell (2005) 7.21
Most "dark matter" transcripts are associated with known genes. PLoS Biol (2010) 6.60
Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell (2006) 6.42
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell (2006) 5.72
Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways. Nat Biotechnol (2003) 5.60
A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol Cell (2003) 5.57
Exploration of essential gene functions via titratable promoter alleles. Cell (2004) 5.21
DNA-binding specificities of human transcription factors. Cell (2013) 5.14
Probing microRNAs with microarrays: tissue specificity and functional inference. RNA (2004) 4.91
A compendium of RNA-binding motifs for decoding gene regulation. Nature (2013) 4.91
Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo. EMBO J (2010) 4.78
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol (2008) 4.78
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat Genet (2002) 4.68
Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. Mol Cell (2007) 4.58
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics (2005) 4.28
High-definition macromolecular composition of yeast RNA-processing complexes. Mol Cell (2004) 4.18
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast. Cell (2006) 4.03
Rapid tRNA decay can result from lack of nonessential modifications. Mol Cell (2006) 3.86
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol (2004) 3.72
Identification of a bacterial type III effector family with G protein mimicry functions. Cell (2006) 3.47
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities. Genome Res (2010) 3.46
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol (2009) 3.44
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol (2013) 3.41
Using expression profiling data to identify human microRNA targets. Nat Methods (2007) 3.37
A panoramic view of yeast noncoding RNA processing. Cell (2003) 3.11
The synthetic genetic interaction spectrum of essential genes. Nat Genet (2005) 3.06
G+C content dominates intrinsic nucleosome occupancy. BMC Bioinformatics (2009) 3.05
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell (2011) 2.89
Conservation of core gene expression in vertebrate tissues. J Biol (2009) 2.84
Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4. Proc Natl Acad Sci U S A (2004) 2.80
Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol (2008) 2.73
Why are there still over 1000 uncharacterized yeast genes? Genetics (2007) 2.71
SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase. Dev Cell (2007) 2.64
High nucleosome occupancy is encoded at human regulatory sequences. PLoS One (2010) 2.43
RBPDB: a database of RNA-binding specificities. Nucleic Acids Res (2010) 2.42
RAM: a conserved signaling network that regulates Ace2p transcriptional activity and polarized morphogenesis. Mol Biol Cell (2003) 2.40
Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A (2006) 2.39
Evaluation of methods for modeling transcription factor sequence specificity. Nat Biotechnol (2013) 2.34
BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex. Curr Biol (2005) 2.32
H2B ubiquitylation acts as a barrier to Ctk1 nucleosomal recruitment prior to removal by Ubp8 within a SAGA-related complex. Mol Cell (2007) 2.32
Alternative splicing of conserved exons is frequently species-specific in human and mouse. Trends Genet (2005) 2.26
Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs. Nat Genet (2005) 2.15
Conserved structure for single-stranded telomeric DNA recognition. Science (2002) 2.11
TFCat: the curated catalog of mouse and human transcription factors. Genome Biol (2009) 2.06
Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same. Trends Genet (2010) 1.97
Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex activity that regulates snoRNA accumulation. J Cell Biol (2008) 1.92
Xanthohumol and related prenylflavonoids from hops and beer: to your good health! Phytochemistry (2004) 1.90
RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. Bioinformatics (2007) 1.86
H2B ubiquitin protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex. Mol Cell Biol (2005) 1.82
Functional coordination of alternative splicing in the mammalian central nervous system. Genome Biol (2007) 1.80
RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins. PLoS Comput Biol (2010) 1.78
C3-dependent mechanism of microglial priming relevant to multiple sclerosis. Proc Natl Acad Sci U S A (2012) 1.73
Nucleosome sequence preferences influence in vivo nucleosome organization. Nat Struct Mol Biol (2010) 1.72
The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis. Mol Cell Biol (2006) 1.70
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. Elife (2013) 1.64
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads. Plant J (2012) 1.62
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Genome Biol (2014) 1.56
Prediction and testing of novel transcriptional networks regulating embryonic stem cell self-renewal and commitment. Cell Stem Cell (2007) 1.56
Transcriptional networks: reverse-engineering gene regulation on a global scale. Curr Opin Microbiol (2004) 1.54
EST analysis of hop glandular trichomes identifies an O-methyltransferase that catalyzes the biosynthesis of xanthohumol. Plant Cell (2008) 1.54
Retracted Modulation of CD59 expression by restrictive silencer factor-derived peptides in cancer immunotherapy for neuroblastoma. Cancer Res (2008) 1.49
Detection and effects of a homeologous reciprocal transposition in Brassica napus. Genetics (2003) 1.47
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription. BMC Genomics (2005) 1.47
RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits. Mol Cell Biol (2004) 1.46
The specificities of four yeast dihydrouridine synthases for cytoplasmic tRNAs. J Biol Chem (2004) 1.43
Sequence and structure of Brassica rapa chromosome A3. Genome Biol (2010) 1.35
The complement membrane attack complex triggers intracellular Ca2+ fluxes leading to NLRP3 inflammasome activation. J Cell Sci (2013) 1.33
Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest. J Biotechnol (2013) 1.32
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Res (2010) 1.32
Establishing legitimacy and function in the new transcriptome. Brief Funct Genomic Proteomic (2009) 1.31
Parasite burden and CD36-mediated sequestration are determinants of acute lung injury in an experimental malaria model. PLoS Pathog (2008) 1.28
Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays. Nucleic Acids Res (2011) 1.27
YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities. Nucleic Acids Res (2011) 1.26
Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins. Proc Natl Acad Sci U S A (2011) 1.26
Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology. Genome Biol (2010) 1.25
Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. Mol Cell (2009) 1.24
A survey of essential gene function in the yeast cell division cycle. Mol Biol Cell (2006) 1.23
Transcriptome analysis of bitter acid biosynthesis and precursor pathways in hop (Humulus lupulus). BMC Plant Biol (2013) 1.22
Zfp206 regulates ES cell gene expression and differentiation. Nucleic Acids Res (2006) 1.22
Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Mol Cell (2013) 1.21
Simultaneous host and parasite expression profiling identifies tissue-specific transcriptional programs associated with susceptibility or resistance to experimental cerebral malaria. BMC Genomics (2006) 1.20
Cutting edge: the NLRP3 inflammasome links complement-mediated inflammation and IL-1β release. J Immunol (2013) 1.20
Synthetic biosystems for the production of high-value plant metabolites. Trends Biotechnol (2011) 1.19
Considerations in the identification of functional RNA structural elements in genomic alignments. BMC Bioinformatics (2007) 1.18
A functional genomics screen identifies diverse transcription factors that regulate alkaloid biosynthesis in Nicotiana benthamiana. Plant J (2010) 1.14
Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC Genomics (2014) 1.13
A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits. BMC Genomics (2013) 1.11
De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes. BMC Genomics (2011) 1.08