Published in Open Biol on November 20, 2013
Poly(A)-binding proteins are required for microRNA-mediated silencing and to promote target deadenylation in C. elegans. Nucleic Acids Res (2016) 0.79
Small RNA in situ hybridization in Caenorhabditis elegans, combined with RNA-seq, identifies germline-enriched microRNAs. Dev Biol (2016) 0.75
TEG-1 CD2BP2 controls miRNA levels by regulating miRISC stability in C. elegans and human cells. Nucleic Acids Res (2017) 0.75
RNA Binding Protein Vigilin Collaborates with miRNAs To Regulate Gene Expression for Caenorhabditis elegans Larval Development. G3 (Bethesda) (2017) 0.75
The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription. Dev Cell (2017) 0.75
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature (2000) 39.31
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol (2008) 38.00
The impact of microRNAs on protein output. Nature (2008) 32.39
Widespread changes in protein synthesis induced by microRNAs. Nature (2008) 31.44
RAS is regulated by the let-7 microRNA family. Cell (2005) 30.24
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature (2003) 26.58
Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell (2001) 25.86
Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature (2000) 15.98
The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet (2010) 15.87
MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells. Nat Methods (2007) 13.94
A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans. Science (2001) 11.86
The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Mol Cell (2000) 10.92
Creation of low-copy integrated transgenic lines in Caenorhabditis elegans. Genetics (2001) 10.29
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (2010) 9.78
Single-copy insertion of transgenes in Caenorhabditis elegans. Nat Genet (2008) 7.58
Heterochronic mutants of the nematode Caenorhabditis elegans. Science (1984) 6.85
The C elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target. Dev Cell (2003) 6.74
The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans. Dev Cell (2005) 5.90
Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PLoS Genet (2007) 5.33
Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation. Mol Cell (2009) 4.57
Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot. Nucleic Acids Res (2007) 4.54
Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2. Mol Cell (2007) 4.22
mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nat Methods (2008) 3.88
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA (2009) 3.87
A micrococcal nuclease homologue in RNAi effector complexes. Nature (2003) 3.67
The TRIM-NHL protein TRIM32 activates microRNAs and prevents self-renewal in mouse neural progenitors. Cell (2009) 3.60
3' UTRs are the primary regulators of gene expression in the C. elegans germline. Curr Biol (2008) 3.39
Many families of C. elegans microRNAs are not essential for development or viability. Curr Biol (2010) 2.90
nhl-2 Modulates microRNA activity in Caenorhabditis elegans. Cell (2009) 2.87
The glp-1 locus and cellular interactions in early C. elegans embryos. Cell (1987) 2.81
LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans. Nat Struct Mol Biol (2009) 2.79
The STAR protein, GLD-1, is a translational regulator of sexual identity in Caenorhabditis elegans. EMBO J (1999) 2.54
Functional genomic analysis of C. elegans molting. PLoS Biol (2005) 2.39
RNA target specificity of the STAR/GSG domain post-transcriptional regulatory protein GLD-1. Nat Struct Mol Biol (2003) 2.34
Translational repression of C. elegans p53 by GLD-1 regulates DNA damage-induced apoptosis. Cell (2005) 2.21
Analysis of the multiple roles of gld-1 in germline development: interactions with the sex determination cascade and the glp-1 signaling pathway. Genetics (1995) 2.04
Loss of individual microRNAs causes mutant phenotypes in sensitized genetic backgrounds in C. elegans. Curr Biol (2010) 2.02
The mir-84 and let-7 paralogous microRNA genes of Caenorhabditis elegans direct the cessation of molting via the conserved nuclear hormone receptors NHR-23 and NHR-25. Development (2006) 1.86
A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. Nat Methods (2010) 1.82
A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C. elegans. Development (2005) 1.72
Protection of p27(Kip1) mRNA by quaking RNA binding proteins promotes oligodendrocyte differentiation. Nat Neurosci (2004) 1.62
Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis. J Cell Biol (2008) 1.60
Pervasive and cooperative deadenylation of 3'UTRs by embryonic microRNA families. Mol Cell (2010) 1.55
In vivo and transcriptome-wide identification of RNA binding protein target sites. Mol Cell (2011) 1.47
Translational repression of a C. elegans Notch mRNA by the STAR/KH domain protein GLD-1. Development (2003) 1.45
The heterochronic gene lin-29 encodes a zinc finger protein that controls a terminal differentiation event in Caenorhabditis elegans. Development (1995) 1.44
C. elegans SIR-2.1 translocation is linked to a proapoptotic pathway parallel to cep-1/p53 during DNA damage-induced apoptosis. Genes Dev (2008) 1.41
STAR RNA-binding protein Quaking suppresses cancer via stabilization of specific miRNA. Genes Dev (2012) 1.38
Multiple mechanisms are involved in regulating the expression of the developmental timing regulator lin-28 in Caenorhabditis elegans. EMBO J (2006) 1.29
Stable-isotope labeling with amino acids in nematodes. Nat Methods (2011) 1.28
The STAR protein QKI-6 is a translational repressor. Proc Natl Acad Sci U S A (1999) 1.25
A quantitative RNA code for mRNA target selection by the germline fate determinant GLD-1. EMBO J (2010) 1.23
Gene interactions in the DNA damage-response pathway identified by genome-wide RNA-interference analysis of synthetic lethality. Proc Natl Acad Sci U S A (2004) 1.21
Translational repression of cyclin E prevents precocious mitosis and embryonic gene activation during C. elegans meiosis. Dev Cell (2009) 1.19
MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline. PLoS One (2011) 1.18
The STAR/Maxi-KH domain protein GLD-1 mediates a developmental switch in the translational control of C. elegans PAL-1. Development (2004) 1.17
The Caenorhabditis elegans histone hairpin-binding protein is required for core histone gene expression and is essential for embryonic and postembryonic cell division. J Cell Sci (2002) 1.12
The dynamics of replication licensing in live Caenorhabditis elegans embryos. J Cell Biol (2012) 1.11
Quaking regulates Hnrnpa1 expression through its 3' UTR in oligodendrocyte precursor cells. PLoS Genet (2011) 1.11
The conserved miR-51 microRNA family is redundantly required for embryonic development and pharynx attachment in Caenorhabditis elegans. Genetics (2010) 1.06
The stem-loop binding protein CDL-1 is required for chromosome condensation, progression of cell death and morphogenesis in Caenorhabditis elegans. Development (2002) 1.05
Quantitative proteomics by amino acid labeling in C. elegans. Nat Methods (2011) 1.05
Caenorhabditis elegans MES-3 is a target of GLD-1 and functions epigenetically in germline development. Genetics (2001) 1.04
The Caenorhabditis elegans GW182 protein AIN-1 interacts with PAB-1 and subunits of the PAN2-PAN3 and CCR4-NOT deadenylase complexes. Nucleic Acids Res (2012) 1.03
Histone gene expression and histone mRNA 3' end structure in Caenorhabditis elegans. BMC Mol Biol (2007) 1.01
Regulation of Caenorhabditis elegans p53/CEP-1-dependent germ cell apoptosis by Ras/MAPK signaling. PLoS Genet (2011) 1.00
Developmental characterization of the microRNA-specific C. elegans Argonautes alg-1 and alg-2. PLoS One (2012) 0.96
Evidence that CED-9/Bcl2 and CED-4/Apaf-1 localization is not consistent with the current model for C. elegans apoptosis induction. Cell Death Differ (2011) 0.94
The QKI-5 and QKI-6 RNA binding proteins regulate the expression of microRNA 7 in glial cells. Mol Cell Biol (2013) 0.93
Genome-wide analysis of GLD-1-mediated mRNA regulation suggests a role in mRNA storage. PLoS Genet (2012) 0.92
Cell autonomous specification of temporal identity by Caenorhabditis elegans microRNA lin-4. Dev Biol (2010) 0.91
C. elegans star proteins, GLD-1 and ASD-2, regulate specific RNA targets to control development. Adv Exp Med Biol (2010) 0.88
mir-35 is involved in intestine cell G1/S transition and germ cell proliferation in C. elegans. Cell Res (2011) 0.88
The QKI-6 RNA binding protein localizes with the MBP mRNAs in stress granules of glial cells. PLoS One (2010) 0.86
Binding of human SLBP on the 3'-UTR of histone precursor H4-12 mRNA induces structural rearrangements that enable U7 snRNA anchoring. Nucleic Acids Res (2006) 0.85
The type II poly(A)-binding protein PABP-2 genetically interacts with the let-7 miRNA and elicits heterochronic phenotypes in Caenorhabditis elegans. Nucleic Acids Res (2011) 0.80
MicroRNA expression in zebrafish embryonic development. Science (2005) 15.52
Genetic unmasking of an epigenetically silenced microRNA in human cancer cells. Cancer Res (2007) 5.62
Combined functional genomic maps of the C. elegans DNA damage response. Science (2002) 3.74
Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes. J Cell Biol (2008) 3.53
Identification of KIAA1018/FAN1, a DNA repair nuclease recruited to DNA damage by monoubiquitinated FANCD2. Cell (2010) 3.43
Excess Mcm2-7 license dormant origins of replication that can be used under conditions of replicative stress. J Cell Biol (2006) 3.27
The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase. EMBO J (2002) 2.56
Acute or chronic upregulation of mitochondrial fatty acid oxidation has no net effect on whole-body energy expenditure or adiposity. Cell Metab (2010) 2.44
Genetic and cytological characterization of the recombination protein RAD-51 in Caenorhabditis elegans. Chromosoma (2003) 2.29
Translational repression of C. elegans p53 by GLD-1 regulates DNA damage-induced apoptosis. Cell (2005) 2.21
Caenorhabditis elegans HUS-1 is a DNA damage checkpoint protein required for genome stability and EGL-1-mediated apoptosis. Curr Biol (2002) 2.06
CaMKII-mediated phosphorylation of the myosin motor Myo1c is required for insulin-stimulated GLUT4 translocation in adipocytes. Cell Metab (2008) 1.96
A role for 14-3-3 in insulin-stimulated GLUT4 translocation through its interaction with the RabGAP AS160. J Biol Chem (2006) 1.93
UBF-binding site arrays form pseudo-NORs and sequester the RNA polymerase I transcription machinery. Genes Dev (2004) 1.88
Condensed mitotic chromatin is accessible to transcription factors and chromatin structural proteins. J Cell Biol (2004) 1.86
The opportunistic pathogen Serratia marcescens utilizes type VI secretion to target bacterial competitors. J Bacteriol (2011) 1.82
BRCA1/BARD1 orthologs required for DNA repair in Caenorhabditis elegans. Curr Biol (2004) 1.52
C. elegans SIR-2.1 translocation is linked to a proapoptotic pathway parallel to cep-1/p53 during DNA damage-induced apoptosis. Genes Dev (2008) 1.41
Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis. RNA (2002) 1.34
The serine/threonine kinase ULK1 is a target of multiple phosphorylation events. Biochem J (2011) 1.30
Cell cycle progression requires the CDC-48UFD-1/NPL-4 complex for efficient DNA replication. Proc Natl Acad Sci U S A (2008) 1.29
Stable-isotope labeling with amino acids in nematodes. Nat Methods (2011) 1.28
Sirtuin/Sir2 phylogeny, evolutionary considerations and structural conservation. Mol Cells (2009) 1.27
Maternal Argonaute 2 is essential for early mouse development at the maternal-zygotic transition. Mol Biol Cell (2008) 1.25
CDC-48/p97 coordinates CDT-1 degradation with GINS chromatin dissociation to ensure faithful DNA replication. Mol Cell (2011) 1.24
A complex intronic enhancer regulates expression of the CFTR gene by direct interaction with the promoter. J Cell Mol Med (2009) 1.23
trt-1 is the Caenorhabditis elegans catalytic subunit of telomerase. PLoS Genet (2006) 1.23
Involvement of SIRT7 in resumption of rDNA transcription at the exit from mitosis. J Cell Sci (2009) 1.22
Driver fatigue: electroencephalography and psychological assessment. Psychophysiology (2002) 1.22
The Caenorhabditis elegans homolog of Gen1/Yen1 resolvases links DNA damage signaling to DNA double-strand break repair. PLoS Genet (2010) 1.21
Phylogeny and function of the invertebrate p53 superfamily. Cold Spring Harb Perspect Biol (2010) 1.19
The CeCDC-14 phosphatase is required for cytokinesis in the Caenorhabditis elegans embryo. J Cell Biol (2002) 1.19
DAPK-1 binding to a linear peptide motif in MAP1B stimulates autophagy and membrane blebbing. J Biol Chem (2008) 1.19
The Caenorhabditis elegans AMP-activated protein kinase AAK-2 is phosphorylated by LKB1 and is required for resistance to oxidative stress and for normal motility and foraging behavior. J Biol Chem (2008) 1.19
LAAT-1 is the lysosomal lysine/arginine transporter that maintains amino acid homeostasis. Science (2012) 1.18
Multiple genetic pathways involving the Caenorhabditis elegans Bloom's syndrome genes him-6, rad-51, and top-3 are needed to maintain genome stability in the germ line. Mol Cell Biol (2004) 1.16
Relationship between quality of life and self-efficacy in persons with spinal cord injuries. Arch Phys Med Rehabil (2007) 1.15
Combinatorial regulation of meiotic holliday junction resolution in C. elegans by HIM-6 (BLM) helicase, SLX-4, and the SLX-1, MUS-81 and XPF-1 nucleases. PLoS Genet (2013) 1.13
The dynamics of replication licensing in live Caenorhabditis elegans embryos. J Cell Biol (2012) 1.11
Transcriptional profiling in C. elegans suggests DNA damage dependent apoptosis as an ancient function of the p53 family. BMC Genomics (2008) 1.11
Impact of fatigue on the health-related quality of life in persons with spinal cord injury. Arch Phys Med Rehabil (2012) 1.09
Methods for studying the DNA damage response in the Caenorhabdatis elegans germ line. Methods Cell Biol (2012) 1.08
Phosphorylation-dependent binding of 14-3-3 terminates signalling by the Gab2 docking protein. EMBO J (2008) 1.06
The NM23 family in development. Mol Cell Biochem (2009) 1.05
Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. Mol Cell Proteomics (2013) 1.04
What evidence is there for the existence of individual genes with antagonistic pleiotropic effects? Mech Ageing Dev (2005) 1.03
Development of an algorithm for an EEG-based driver fatigue countermeasure. J Safety Res (2003) 1.01
Regulation of Caenorhabditis elegans p53/CEP-1-dependent germ cell apoptosis by Ras/MAPK signaling. PLoS Genet (2011) 1.00
Functional dissection of Caenorhabditis elegans CLK-2/TEL2 cell cycle defects during embryogenesis and germline development. PLoS Genet (2009) 0.98
Cell-nonautonomous regulation of C. elegans germ cell death by kri-1. Curr Biol (2010) 0.98
The Caenorhabditis elegans Werner syndrome protein functions upstream of ATR and ATM in response to DNA replication inhibition and double-strand DNA breaks. PLoS Genet (2010) 0.97
Germ cell apoptosis and DNA damage responses. Adv Exp Med Biol (2013) 0.95
Social anxiety disorder in adults who stutter. Depress Anxiety (2010) 0.93
The MRT-1 nuclease is required for DNA crosslink repair and telomerase activity in vivo in Caenorhabditis elegans. EMBO J (2009) 0.93
Genome-wide analysis of GLD-1-mediated mRNA regulation suggests a role in mRNA storage. PLoS Genet (2012) 0.92
Quantitative proteomic analysis of the adipocyte plasma membrane. J Proteome Res (2011) 0.91
Subjective distress associated with chronic stuttering. J Fluency Disord (2010) 0.90
Caenorhabditis elegans prom-1 is required for meiotic prophase progression and homologous chromosome pairing. Mol Biol Cell (2007) 0.87
Driver Fatigue Classification With Independent Component by Entropy Rate Bound Minimization Analysis in an EEG-Based System. IEEE J Biomed Health Inform (2016) 0.86
An investigation into the personal financial costs associated with stuttering. J Fluency Disord (2010) 0.86
Neuro magnetic resonance spectroscopy using wavelet decomposition and statistical testing identifies biochemical changes in people with spinal cord injury and pain. Neuroimage (2010) 0.85
Personality traits and its association with resting regional brain activity. Int J Psychophysiol (2005) 0.85
Two-dimensional liquid chromatography/tandem mass spectrometry analysis of Gradiflow fractionated native human plasma. Proteomics (2005) 0.84
Visualization of intracellular PP1 targeting through transiently and stably expressed fluorescent protein fusions. Methods Mol Biol (2007) 0.83
Identification of RhoGAP22 as an Akt-dependent regulator of cell motility in response to insulin. Mol Cell Biol (2011) 0.81
Anxiety as a factor influencing physiological effects of acupuncture. Complement Ther Clin Pract (2009) 0.81
Pain intensity and its association with negative mood States in patients with spinal cord injury. Pain Ther (2013) 0.80
Discrimination of left and right leg motor imagery for brain-computer interfaces. Med Biol Eng Comput (2010) 0.80
The psychophysiological determinants of fatigue. Int J Psychophysiol (2006) 0.80
The NM23-H1/H2 homolog NDK-1 is required for full activation of Ras signaling in C. elegans. Development (2013) 0.80
The adenomatous polyposis coli protein contributes to normal compaction of mitotic chromatin. PLoS One (2012) 0.80
The "Mutated in Colorectal Cancer" Protein Is a Novel Target of the UV-Induced DNA Damage Checkpoint. Genes Cancer (2010) 0.79
Central correlates of impaired information processing in people with spinal cord injury. J Clin Neurophysiol (2013) 0.78
Reproducibility of the spectral components of the electroencephalogram during driver fatigue. Int J Psychophysiol (2005) 0.78
Analysis of eyes open, eye closed EEG signals using second-order difference plot. Med Biol Eng Comput (2007) 0.78
Electrodermal activity as a possible physiological marker for acupuncture. Complement Ther Clin Pract (2008) 0.77
Time course and regional distribution of cortical changes during acute alcohol ingestion. Int J Neurosci (2004) 0.76
Using microstate intensity for the analysis of spontaneous EEG: tracking changes from alert to the fatigue state. Conf Proc IEEE Eng Med Biol Soc (2009) 0.76
Using S-transform in EEG analysis for measuring an alert versus mental fatigue state. Conf Proc IEEE Eng Med Biol Soc (2014) 0.76
Translational regulation of p53 as a potential tumor therapy target. Future Oncol (2006) 0.76
Classification of EEG based-mental fatigue using principal component analysis and Bayesian neural network. Conf Proc IEEE Eng Med Biol Soc (2016) 0.76
Tagging the dead: a bridging factor for Caenorhabditis elegans phagocyte receptors. Nat Cell Biol (2010) 0.75
If you don't want them shed them. Cell Res (2012) 0.75
The shark in us: learning about the evolution of the p53 regulatory circuit. Cell Cycle (2012) 0.75
Changes in blood volume pulse during exercise recovery in activity-based therapy for spinal cord injury. Conf Proc IEEE Eng Med Biol Soc (2011) 0.75
The association between quality of life and stuttering. J Fluency Disord (2010) 0.75
Real-time performance of a hands-free semi-autonomous wheelchair system using a combination of stereoscopic and spherical vision. Conf Proc IEEE Eng Med Biol Soc (2012) 0.75
Frequency analysis of eyes open and eyes closed EEG signals using the Hilbert-Huang transform. Conf Proc IEEE Eng Med Biol Soc (2012) 0.75
Enhancing accuracy of mental fatigue classification using advanced computational intelligence in an electroencephalography system. Conf Proc IEEE Eng Med Biol Soc (2014) 0.75
Improving classification rates for use in fatigue countermeasure devices using brain activity. Conf Proc IEEE Eng Med Biol Soc (2010) 0.75
Major controversies in Fluency disorders: clarifying the relationship between anxiety and stuttering. J Fluency Disord (2014) 0.75
Brain-Computer Interface-FES Integration: Towards a Hands-free Neuroprosthesis Command System. Neuromodulation (2004) 0.75
Erratum: Dynamic SUMO modification regulates mitotic chromosome assembly and cell cycle progression in Caenorhabditis elegans. Nat Commun (2015) 0.75
Meiosis: checking chromosomes pair up properly. Curr Biol (2006) 0.75
Fluency disorders and a commitment to rigorous research. J Fluency Disord (2011) 0.75
Australian normative data for the Overall Assessment of the Speaker's Experience of Stuttering. J Fluency Disord (2011) 0.75