Published in Nucleic Acids Res on October 30, 2010
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Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol (2014) 1.37
Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa. Genome Biol (2011) 1.31
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Circ2Traits: a comprehensive database for circular RNA potentially associated with disease and traits. Front Genet (2013) 1.25
Decreased expression of key tumour suppressor microRNAs is associated with lymph node metastases in triple negative breast cancer. BMC Cancer (2014) 1.16
miR-133b, a muscle-specific microRNA, is a novel prognostic marker that participates in the progression of human colorectal cancer via regulation of CXCR4 expression. Mol Cancer (2013) 1.15
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Shielding the messenger (RNA): microRNA-based anticancer therapies. Pharmacol Ther (2011) 1.12
Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer. J Transl Med (2014) 1.10
MiR-21/Smad 7 signaling determines TGF-β1-induced CAF formation. Sci Rep (2013) 1.09
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MicroRNA in Aging: From Discovery to Biology. Curr Genomics (2012) 1.08
Principal component analysis based feature extraction approach to identify circulating microRNA biomarkers. PLoS One (2013) 1.08
Identification and expression analysis of microRNAs at the grain filling stage in rice(Oryza sativa L.)via deep sequencing. PLoS One (2013) 1.08
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The role of miR-148a in gastric cancer. J Cancer Res Clin Oncol (2014) 1.03
MicroRNAs as Haematopoiesis Regulators. Adv Hematol (2013) 1.03
MicroRNA-195 plays a tumor-suppressor role in human glioblastoma cells by targeting signaling pathways involved in cellular proliferation and invasion. Neuro Oncol (2012) 1.02
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Suppression of microRNA-9 by mutant EGFR signaling upregulates FOXP1 to enhance glioblastoma tumorigenicity. Cancer Res (2014) 0.98
Advances in the techniques for the prediction of microRNA targets. Int J Mol Sci (2013) 0.97
The pattern of cortical dysfunction in a mouse model of a schizophrenia-related microdeletion. J Neurosci (2013) 0.97
Tat-activating regulatory DNA-binding protein regulates glycolysis in hepatocellular carcinoma by regulating the platelet isoform of phosphofructokinase through microRNA 520. Hepatology (2013) 0.96
miRNA-mediated risk for schizophrenia in 22q11.2 deletion syndrome. Front Genet (2012) 0.96
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. BMC Genomics (2013) 0.96
TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks. Nucleic Acids Res (2015) 0.95
Systematic analysis of small RNAs associated with human mitochondria by deep sequencing: detailed analysis of mitochondrial associated miRNA. PLoS One (2012) 0.95
Epigenetic silencing of miRNA-9 is associated with HES1 oncogenic activity and poor prognosis of medulloblastoma. Br J Cancer (2013) 0.94
Specific impact of tobamovirus infection on the Arabidopsis small RNA profile. PLoS One (2011) 0.94
Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach. BMC Bioinformatics (2014) 0.93
Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. J Am Med Inform Assoc (2011) 0.93
High expression of cAMP-responsive element-binding protein 1 (CREB1) is associated with metastasis, tumor stage and poor outcome in gastric cancer. Oncotarget (2015) 0.93
Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis. Biomed Res Int (2014) 0.92
Identification of circulating microRNAs for the differential diagnosis of Parkinson's disease and Multiple System Atrophy. Front Cell Neurosci (2014) 0.92
Pharmaco-miR: linking microRNAs and drug effects. Brief Bioinform (2013) 0.92
The mRNA related ceRNA-ceRNA landscape and significance across 20 major cancer types. Nucleic Acids Res (2015) 0.92
Cis-acting polymorphisms affect complex traits through modifications of microRNA regulation pathways. PLoS One (2012) 0.91
Inhibition of microRNA-24 expression in liver prevents hepatic lipid accumulation and hyperlipidemia. Hepatology (2014) 0.91
A meta-analysis of microRNA expression in liver cancer. PLoS One (2014) 0.90
Toward a combinatorial nature of microRNA regulation in human cells. Nucleic Acids Res (2012) 0.90
Characterization and expression patterns of microRNAs involved in rice grain filling. PLoS One (2013) 0.90
Differentially expressed microRNAs in the serum of cervical squamous cell carcinoma patients before and after surgery. J Hematol Oncol (2014) 0.90
Tumor suppressor miR-375 regulates MYC expression via repression of CIP2A coding sequence through multiple miRNA-mRNA interactions. Mol Biol Cell (2013) 0.90
Simultaneously expressed miR-424 and miR-381 synergistically suppress the proliferation and survival of renal cancer cells---Cdc2 activity is up-regulated by targeting WEE1. Clinics (Sao Paulo) (2013) 0.90
The Cancer Genome Atlas Analysis Predicts MicroRNA for Targeting Cancer Growth and Vascularization in Glioblastoma. Mol Ther (2015) 0.89
Design and bioinformatics analysis of genome-wide CLIP experiments. Nucleic Acids Res (2015) 0.88
Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings. BMC Genomics (2014) 0.88
Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells. Cell Rep (2016) 0.88
CircNet: a database of circular RNAs derived from transcriptome sequencing data. Nucleic Acids Res (2015) 0.88
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data. Nucleic Acids Res (2015) 0.88
Plant microRNA-target interaction identification model based on the integration of prediction tools and support vector machine. PLoS One (2014) 0.88
RNA Binding Proteins in the miRNA Pathway. Int J Mol Sci (2015) 0.88
The role of RNA structure at 5' untranslated region in microRNA-mediated gene regulation. RNA (2014) 0.88
Circular RNAs and their associations with breast cancer subtypes. Oncotarget (2016) 0.88
Identification of potential microRNA-target pairs associated with osteopetrosis by deep sequencing, iTRAQ proteomics and bioinformatics. Eur J Hum Genet (2013) 0.87
SETD1A modulates cell cycle progression through a miRNA network that regulates p53 target genes. Nat Commun (2015) 0.87
Long non-coding RNA Databases in Cardiovascular Research. Genomics Proteomics Bioinformatics (2016) 0.87
RFMirTarget: predicting human microRNA target genes with a random forest classifier. PLoS One (2013) 0.87
Construction and analysis of cardiac hypertrophy-associated lncRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in cardiac hypertrophy. Oncotarget (2016) 0.86
Finding microRNA targets in plants: current status and perspectives. Genomics Proteomics Bioinformatics (2012) 0.86
MicroRNAs as predictive biomarkers and therapeutic targets in prostate cancer. Am J Clin Exp Urol (2014) 0.86
Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites. PLoS One (2014) 0.86
UBASH3B/Sts-1-CBL axis regulates myeloid proliferation in human preleukemia induced by AML1-ETO. Leukemia (2015) 0.86
The human transcriptome is enriched for miRNA-binding sites located in cooperativity-permitting distance. RNA Biol (2013) 0.85
Genome-wide screen identified let-7c/miR-99a/miR-125b regulating tumor progression and stem-like properties in cholangiocarcinoma. Oncogene (2015) 0.85
Down-regulation of BTG1 by miR-454-3p enhances cellular radiosensitivity in renal carcinoma cells. Radiat Oncol (2014) 0.85
Computational inference of mRNA stability from histone modification and transcriptome profiles. Nucleic Acids Res (2012) 0.85
MicroRNA-99a inhibits tumor aggressive phenotypes through regulating HOXA1 in breast cancer cells. Oncotarget (2015) 0.85
A new algorithm for integrated analysis of miRNA-mRNA interactions based on individual classification reveals insights into bladder cancer. PLoS One (2013) 0.85
A network-biology perspective of microRNA function and dysfunction in cancer. Nat Rev Genet (2016) 0.85
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Nucleic Acids Res (2015) 0.85
HOTAIR Promotes Proliferation, Migration, and Invasion of Ovarian Cancer SKOV3 Cells Through Regulating PIK3R3. Med Sci Monit (2016) 0.84
Proteotranscriptomic Profiling of 231-BR Breast Cancer Cells: Identification of Potential Biomarkers and Therapeutic Targets for Brain Metastasis. Mol Cell Proteomics (2015) 0.84
Meta gene set enrichment analyses link miR-137-regulated pathways with schizophrenia risk. Front Genet (2015) 0.84
Combinatorial Control of mRNA Fates by RNA-Binding Proteins and Non-Coding RNAs. Biomolecules (2015) 0.84
The oncogenic MicroRNA Hsa-miR-155-5p targets the transcription factor ELK3 and links it to the hypoxia response. PLoS One (2014) 0.83
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach. BMC Genomics (2012) 0.83
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12
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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell (2005) 96.87
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The functions of animal microRNAs. Nature (2004) 64.85
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Combinatorial microRNA target predictions. Nat Genet (2005) 50.48
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Human MicroRNA targets. PLoS Biol (2004) 34.51
The impact of microRNAs on protein output. Nature (2008) 32.39
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The role of site accessibility in microRNA target recognition. Nat Genet (2007) 18.52
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature (2007) 18.04
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell (2010) 17.87
NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res (2008) 17.35
The UCSC Genome Browser database: update 2010. Nucleic Acids Res (2009) 16.58
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell (2005) 14.81
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell (2006) 14.70
HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature (2008) 14.17
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature (2009) 14.07
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell (2004) 12.97
microRNA target predictions in animals. Nat Genet (2006) 10.76
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature (2008) 9.83
miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res (2008) 8.97
The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res (2006) 8.26
A guide through present computational approaches for the identification of mammalian microRNA targets. Nat Methods (2006) 7.00
MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation. Mol Cell (2008) 6.58
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat Struct Mol Biol (2009) 6.37
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol (2008) 6.18
GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res (2008) 6.07
The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res (2008) 5.65
RNA processing and its regulation: global insights into biological networks. Nat Rev Genet (2010) 5.34
Ensembl Genomes: extending Ensembl across the taxonomic space. Nucleic Acids Res (2009) 5.09
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol (2008) 5.00
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res (2006) 4.80
Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Mol Cell (2009) 4.71
Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol (2009) 4.24
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nat Struct Mol Biol (2010) 4.22
Expanding the microRNA targeting code: functional sites with centered pairing. Mol Cell (2010) 4.20
miRU: an automated plant miRNA target prediction server. Nucleic Acids Res (2005) 3.24
Plant snoRNA database. Nucleic Acids Res (2003) 3.15
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. Nucleic Acids Res (2007) 3.05
miRGator: an integrated system for functional annotation of microRNAs. Nucleic Acids Res (2007) 2.59
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Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J (2010) 2.46
Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protoc (2009) 2.12
Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases. Mol Cell (2010) 2.09
Rice MicroRNA effector complexes and targets. Plant Cell (2009) 1.93
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miRNA Target Prediction in Plants. Methods Mol Biol (2010) 1.39
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The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (2007) 11.15
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res (2013) 4.33
Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication. Science (2007) 4.12
Acetylation of histone H3 lysine 56 regulates replication-coupled nucleosome assembly. Cell (2008) 3.96
Salivary microRNA: discovery, characterization, and clinical utility for oral cancer detection. Clin Cancer Res (2009) 3.86
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Salivary proteomic and genomic biomarkers for primary Sjögren's syndrome. Arthritis Rheum (2007) 2.90
Salivary proteomics for oral cancer biomarker discovery. Clin Cancer Res (2008) 2.81
Complete reconstitution of a highly reducing iterative polyketide synthase. Science (2009) 2.68
Liver-enriched transcription factors regulate microRNA-122 that targets CUTL1 during liver development. Hepatology (2010) 2.64
The SNPlex genotyping system: a flexible and scalable platform for SNP genotyping. J Biomol Tech (2005) 2.64
Acetylation of lysine 56 of histone H3 catalyzed by RTT109 and regulated by ASF1 is required for replisome integrity. J Biol Chem (2007) 2.38
Variations of oral microbiota are associated with pancreatic diseases including pancreatic cancer. Gut (2011) 2.38
Alternative splicing of cGMP-dependent protein kinase I in angiotensin-hypertension: novel mechanism for nitrate tolerance in vascular smooth muscle. Circ Res (2003) 2.35
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A role for Gcn5 in replication-coupled nucleosome assembly. Mol Cell (2010) 2.14
Salivary transcriptomic biomarkers for detection of resectable pancreatic cancer. Gastroenterology (2009) 2.13
Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. PLoS One (2010) 2.12
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The Rtt109-Vps75 histone acetyltransferase complex acetylates non-nucleosomal histone H3. J Biol Chem (2007) 1.80
Inducible knockout of GRP78/BiP in the hematopoietic system suppresses Pten-null leukemogenesis and AKT oncogenic signaling. Blood (2011) 1.79
deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res (2009) 1.78
MicroRNA-21 promotes cell proliferation and down-regulates the expression of programmed cell death 4 (PDCD4) in HeLa cervical carcinoma cells. Biochem Biophys Res Commun (2009) 1.73
snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nucleic Acids Res (2006) 1.73
Diverse functions of miR-125 family in different cell contexts. J Hematol Oncol (2013) 1.72
Electrochemical sensor for multiplex biomarkers detection. Clin Cancer Res (2009) 1.67
MicroRNA patterns associated with clinical prognostic parameters and CNS relapse prediction in pediatric acute leukemia. PLoS One (2009) 1.62
Identification of 20 microRNAs from Oryza sativa. Nucleic Acids Res (2004) 1.61
Regulation of PERK signaling and leukemic cell survival by a novel cytosolic isoform of the UPR regulator GRP78/BiP. PLoS One (2009) 1.58
Evidence that a West-East admixed population lived in the Tarim Basin as early as the early Bronze Age. BMC Biol (2010) 1.55
Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing. Proc Natl Acad Sci U S A (2005) 1.55
Injection of recombinant human type VII collagen corrects the disease phenotype in a murine model of dystrophic epidermolysis bullosa. Mol Ther (2008) 1.54
Epidemiologic study of the predisposing factors in erythema toxicum neonatorum. Dermatology (2005) 1.53
Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia. Nucleic Acids Res (2008) 1.52
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development. FEBS Lett (2006) 1.47
Pathogenesis of carcinoma of the papilla of Vater. J Hepatobiliary Pancreat Surg (2004) 1.45
Efficacy of single-dose and triple-dose albendazole and mebendazole against soil-transmitted helminths and Taenia spp.: a randomized controlled trial. PLoS One (2011) 1.45
Extremely low genetic diversity indicating the endangered status of Ranodon sibiricus (Amphibia: Caudata) and implications for phylogeography. PLoS One (2012) 1.44
piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin Chim Acta (2011) 1.43
Discovery and preclinical validation of salivary transcriptomic and proteomic biomarkers for the non-invasive detection of breast cancer. PLoS One (2010) 1.43
Mitochondrial DNA evidence for a diversified origin of workers building First Emperor of China. PLoS One (2008) 1.40
Impulse inhibition in people with Internet addiction disorder: electrophysiological evidence from a Go/NoGo study. Neurosci Lett (2010) 1.40
piR-823, a novel non-coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett (2011) 1.39
Exon-level expression profiling: a comprehensive transcriptome analysis of oral fluids. Clin Chem (2008) 1.38
The Relationship of Parathyroidectomy and Bisphosphonates With Fracture Risk in Primary Hyperparathyroidism: An Observational Study. Ann Intern Med (2016) 1.38
HMGB1 acts on microglia Mac1 to mediate chronic neuroinflammation that drives progressive neurodegeneration. J Neurosci (2011) 1.38
A novel role for histone chaperones CAF-1 and Rtt106p in heterochromatin silencing. EMBO J (2007) 1.37
Visualizing individual nitrogen dopants in monolayer graphene. Science (2011) 1.35
Systemic disease-induced salivary biomarker profiles in mouse models of melanoma and non-small cell lung cancer. PLoS One (2009) 1.35
High glucose down-regulates miR-29a to increase collagen IV production in HK-2 cells. FEBS Lett (2010) 1.34
The elongator complex interacts with PCNA and modulates transcriptional silencing and sensitivity to DNA damage agents. PLoS Genet (2009) 1.32
Neuroinflammation and α-synuclein dysfunction potentiate each other, driving chronic progression of neurodegeneration in a mouse model of Parkinson's disease. Environ Health Perspect (2011) 1.30
Precursor or sequela: pathological disorders in people with Internet addiction disorder. PLoS One (2011) 1.30
Prevalidation of salivary biomarkers for oral cancer detection. Cancer Epidemiol Biomarkers Prev (2012) 1.30
Characterization of a brain-enriched chaperone, MRJ, that inhibits Huntingtin aggregation and toxicity independently. J Biol Chem (2002) 1.29
A new method for purification of recombinant human alpha-synuclein in Escherichia coli. Protein Expr Purif (2005) 1.28
Identification of autoantibody biomarkers for primary Sjögren's syndrome using protein microarrays. Proteomics (2011) 1.27
Mitogenomic perspectives on the origin and phylogeny of living amphibians. Syst Biol (2005) 1.26
The Schizosaccharomyces pombe mgU6-47 gene is required for 2'-O-methylation of U6 snRNA at A41. Nucleic Acids Res (2002) 1.26
Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling. FEBS Lett (2009) 1.26