dbDEMC: a database of differentially expressed miRNAs in human cancers.

HMDD v2.0: a database for experimentally supported human microRNA and disease associations. Nucleic Acids Res (2013) 1.71

Long noncoding RNA associated-competing endogenous RNAs in gastric cancer. Sci Rep (2014) 1.50

Semi-supervised learning for potential human microRNA-disease associations inference. Sci Rep (2014) 1.16

Prediction of microRNAs associated with human diseases based on weighted k most similar neighbors. PLoS One (2013) 1.11

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction. Sci Rep (2016) 1.11

Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer. J Transl Med (2014) 1.10

Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA. Sci Rep (2015) 1.04

Similarity-based methods for potential human microRNA-disease association prediction. BMC Med Genomics (2013) 1.02

miRNEST database: an integrative approach in microRNA search and annotation. Nucleic Acids Res (2011) 0.99

Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010). BMC Genomics (2010) 0.98

HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction. Oncotarget (2016) 0.95

RCDB: Renal Cancer Gene Database. BMC Res Notes (2012) 0.95

Protein-driven inference of miRNA-disease associations. Bioinformatics (2013) 0.92

Prediction of associations between OMIM diseases and microRNAs by random walk on OMIM disease similarity network. ScientificWorldJournal (2013) 0.89

Prioritizing cancer-related key miRNA-target interactions by integrative genomics. Nucleic Acids Res (2012) 0.86

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction. PLoS Comput Biol (2017) 0.84

MCMDA: Matrix completion for MiRNA-disease association prediction. Oncotarget (2017) 0.82

Computational prediction of disease microRNAs in domestic animals. BMC Res Notes (2014) 0.80

dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers. Nucleic Acids Res (2016) 0.79

TUMIR: an experimentally supported database of microRNA deregulation in various cancers. J Clin Bioinforma (2013) 0.78

Network Consistency Projection for Human miRNA-Disease Associations Inference. Sci Rep (2016) 0.76

RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction. RNA Biol (2017) 0.76

Large-scale prediction of microRNA-disease associations by combinatorial prioritization algorithm. Sci Rep (2017) 0.75

Establishing reliable miRNA-cancer association network based on text-mining method. Comput Math Methods Med (2014) 0.75

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31

MicroRNAs: genomics, biogenesis, mechanism, and function. Cell (2004) 198.59

Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A (2001) 132.88

MicroRNA expression profiles classify human cancers. Nature (2005) 69.12

Prediction of mammalian microRNA targets. Cell (2003) 53.70

Combinatorial microRNA target predictions. Nat Genet (2005) 50.48

A microRNA polycistron as a potential human oncogene. Nature (2005) 40.21

miRBase: tools for microRNA genomics. Nucleic Acids Res (2007) 38.61

Human MicroRNA targets. PLoS Biol (2004) 34.51

Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proc Natl Acad Sci U S A (2002) 32.26

c-Myc-regulated microRNAs modulate E2F1 expression. Nature (2005) 31.81

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature (2005) 31.60

Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc Natl Acad Sci U S A (2004) 28.29

Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival. Cancer Res (2004) 18.86

NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res (2008) 17.35

The microRNA.org resource: targets and expression. Nucleic Acids Res (2007) 16.26

MicroRNA expression in zebrafish embryonic development. Science (2005) 15.52

A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation. Cancer Res (2005) 10.46

Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis. Nucleic Acids Res (2005) 9.80

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer. Nucleic Acids Res (2009) 9.59

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci U S A (2004) 9.42

MicroRNA functions in animal development and human disease. Development (2005) 8.41

miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res (2008) 6.30

MicroRNA biogenesis and cancer. Cancer Res (2005) 4.41

Altered expression of miR-21, miR-31, miR-143 and miR-145 is related to clinicopathologic features of colorectal cancer. Oncology (2008) 4.38

Downregulation of miR-122 in the rodent and human hepatocellular carcinomas. J Cell Biochem (2006) 4.15

miR-15b and miR-16 modulate multidrug resistance by targeting BCL2 in human gastric cancer cells. Int J Cancer (2008) 4.09

Coordinate regulation of FOXO1 by miR-27a, miR-96, and miR-182 in breast cancer cells. J Biol Chem (2009) 3.89

Retracted MicroRNA-221/222 negatively regulates estrogen receptor alpha and is associated with tamoxifen resistance in breast cancer. J Biol Chem (2008) 3.63

MicroRNA: implications for cancer. Virchows Arch (2007) 3.17

Downregulation of microRNAs-143 and -145 in B-cell malignancies. Cancer Sci (2007) 2.61

miRGator: an integrated system for functional annotation of microRNAs. Nucleic Acids Res (2007) 2.59

Identification of miRNAs associated with tumorigenesis of retinoblastoma by miRNA microarray analysis. Childs Nerv Syst (2008) 2.20

High miR-196a levels promote the oncogenic phenotype of colorectal cancer cells. World J Gastroenterol (2009) 1.62

MicroRNA-196a is a potential marker of progression during Barrett's metaplasia-dysplasia-invasive adenocarcinoma sequence in esophagus. Am J Pathol (2009) 1.51

MicroRNA regulation of cancer stem cells and therapeutic implications. AAPS J (2009) 1.37

ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis. Nucleic Acids Res (2006) 1.35

S-MED: sarcoma microRNA expression database. Lab Invest (2010) 1.29

Germline mutation of microRNA-125a is associated with breast cancer. J Med Genet (2009) 1.25

MicroRNA and Cancer: Tiny Molecules with Major Implications. Curr Genomics (2008) 1.13

SAGE detects microRNA precursors. BMC Genomics (2006) 0.90

dbDEPC: a database of differentially expressed proteins in human cancers. Nucleic Acids Res (2009) 0.90

HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma. Nucleic Acids Res (2006) 0.89

The properties and functions of virus encoded microRNA, siRNA, and other small noncoding RNAs. Crit Rev Microbiol (2008) 0.85

A quantitative PCR method to detect blood microRNAs associated with tumorigenesis in transgenic mice. Mol Cancer (2008) 0.79

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans. Nat Genet (2013) 3.89

Sensing movement: microsensors for body motion measurement. Sensors (Basel) (2011) 3.27

NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Res (2005) 3.16

Analysis of Lrrk2 R1628P as a risk factor for Parkinson's disease. Ann Neurol (2008) 2.95

Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell (2006) 2.91

Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res (2003) 2.90

Identification of a novel risk variant in the FUS gene in essential tremor. Neurology (2013) 2.84

A drug burden index to define the functional burden of medications in older people. Arch Intern Med (2007) 2.84

NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res (2011) 2.82

STAT3 inhibition of gluconeogenesis is downregulated by SirT1. Nat Cell Biol (2009) 2.67

Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. Nucleic Acids Res (2011) 2.55

Cardiomyocyte-restricted knockout of STAT3 results in higher sensitivity to inflammation, cardiac fibrosis, and heart failure with advanced age. Proc Natl Acad Sci U S A (2003) 2.54

Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients. J Infect Dis (2012) 2.53

Regulation of endothelial cell branching morphogenesis by endogenous chemokine stromal-derived factor-1. Blood (2002) 2.43

NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res (2013) 2.37

DNA C-circles are specific and quantifiable markers of alternative-lengthening-of-telomeres activity. Nat Biotechnol (2009) 2.35

The yak genome and adaptation to life at high altitude. Nat Genet (2012) 2.34

Taking qPCR to a higher level: Analysis of CNV reveals the power of high throughput qPCR to enhance quantitative resolution. Methods (2010) 2.27

Large-scale replication and heterogeneity in Parkinson disease genetic loci. Neurology (2012) 2.18

The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation. EMBO Rep (2007) 2.15

MSOAR: a high-throughput ortholog assignment system based on genome rearrangement. J Comput Biol (2007) 2.14

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res (2010) 2.09

IMP-4 and OXA beta-lactamases in Acinetobacter baumannii from Singapore. J Antimicrob Chemother (2007) 1.98

Transmission of MDR and XDR tuberculosis in Shanghai, China. PLoS One (2009) 1.93

SirT1 knockdown in liver decreases basal hepatic glucose production and increases hepatic insulin responsiveness in diabetic rats. Proc Natl Acad Sci U S A (2009) 1.89

A randomized controlled trial comparing 2 types of spinal manipulation and minimal conservative medical care for adults 55 years and older with subacute or chronic low back pain. J Manipulative Physiol Ther (2009) 1.87

Cystic kidney gene seahorse regulates cilia-mediated processes and Wnt pathways. Dev Cell (2008) 1.87

Comprehensive analysis of NAC domain transcription factor gene family in Populus trichocarpa. BMC Plant Biol (2010) 1.84

Mammalian target of rapamycin regulates murine and human cell differentiation through STAT3/p63/Jagged/Notch cascade. J Clin Invest (2009) 1.80

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res (2005) 1.77

Ruthenium-catalyzed azide-alkyne cycloaddition: scope and mechanism. J Am Chem Soc (2008) 1.76

3-nitropropionic acid is a suicide inhibitor of mitochondrial respiration that, upon oxidation by complex II, forms a covalent adduct with a catalytic base arginine in the active site of the enzyme. J Biol Chem (2005) 1.75

Agrp neurons mediate Sirt1's action on the melanocortin system and energy balance: roles for Sirt1 in neuronal firing and synaptic plasticity. J Neurosci (2010) 1.73

Proliferation and differentiation of bone marrow stromal cells under hypoxic conditions. Biochem Biophys Res Commun (2006) 1.72

RBP-Jkappa/SHARP recruits CtIP/CtBP corepressors to silence Notch target genes. Mol Cell Biol (2005) 1.72

Detection of Treponema pallidum in skin lesions of secondary syphilis and characterization of the inflammatory infiltrate. Dermatology (2004) 1.69

NONCODE v2.0: decoding the non-coding. Nucleic Acids Res (2007) 1.69

Free energy of DNA duplex formation on short oligonucleotide microarrays. Nucleic Acids Res (2006) 1.68

Golgi protein 73 (GOLPH2) is a valuable serum marker for hepatocellular carcinoma. Gut (2010) 1.67

US-guided percutaneous microwave coagulation of small breast cancers: a clinical study. Radiology (2012) 1.66

Assignment of orthologous genes via genome rearrangement. IEEE/ACM Trans Comput Biol Bioinform (2006) 1.66

TP53 Arg72Pro polymorphism and skin cancer risk: a meta-analysis. J Invest Dermatol (2010) 1.65

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. Nucleic Acids Res (2013) 1.64

Long noncoding RNA MALAT-1 is a new potential therapeutic target for castration resistant prostate cancer. J Urol (2013) 1.64

Prolylcarboxypeptidase regulates food intake by inactivating alpha-MSH in rodents. J Clin Invest (2009) 1.63

SLC1A2 variant associated with essential tremor but not Parkinson disease in Chinese subjects. Neurology (2013) 1.61

PEG-co-PCL nanoparticles modified with MMP-2/9 activatable low molecular weight protamine for enhanced targeted glioblastoma therapy. Biomaterials (2012) 1.59

Mycobacterial p(1)-type ATPases mediate resistance to zinc poisoning in human macrophages. Cell Host Microbe (2011) 1.59

Glucocerebrosidase mutations and risk of Parkinson disease in Chinese patients. Arch Neurol (2007) 1.58

Wnts induce migration and invasion of myeloma plasma cells. Blood (2005) 1.58

Multiple LRRK2 variants modulate risk of Parkinson disease: a Chinese multicenter study. Hum Mutat (2010) 1.57

Meta-analysis of association between TP53 Arg72Pro polymorphism and bladder cancer risk. Urology (2010) 1.55

Effects of basic fibroblast growth factor microspheres on angiogenesis in ischemic myocardium and cardiac function: analysis with dobutamine cardiovascular magnetic resonance tagging. Eur J Cardiothorac Surg (2006) 1.54

Angiotensin AT2 receptor protects against cerebral ischemia-induced neuronal injury. FASEB J (2005) 1.54

A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis. Plant Mol Biol (2006) 1.52

Role of the luxS quorum-sensing system in biofilm formation and virulence of Staphylococcus epidermidis. Infect Immun (2006) 1.51

Aptamer-functionalized PEG-PLGA nanoparticles for enhanced anti-glioma drug delivery. Biomaterials (2011) 1.50

Wild-type and 'a' epitope variants in chronic hepatitis B virus carriers positive for hepatitis B surface antigen and antibody. J Gastroenterol Hepatol (2002) 1.50

Triggering of toll-like receptor-4 in human multiple myeloma cells promotes proliferation and alters cell responses to immune and chemotherapy drug attack. Cancer Biol Ther (2011) 1.50

No association between CYP1B1 Val432Leu polymorphism and breast cancer risk: a meta-analysis involving 40,303 subjects. Breast Cancer Res Treat (2009) 1.49

Endothelial cells require STAT3 for protection against endotoxin-induced inflammation. J Exp Med (2003) 1.49

Cross-priming amplification for rapid detection of Mycobacterium tuberculosis in sputum specimens. J Clin Microbiol (2008) 1.47

Methylene blue protects against paraquat-induced acute lung injury in rats. Int Immunopharmacol (2013) 1.47

Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. Nucleic Acids Res (2012) 1.46

ncFANs: a web server for functional annotation of long non-coding RNAs. Nucleic Acids Res (2011) 1.46

Shockwaves increase T-cell proliferation and IL-2 expression through ATP release, P2X7 receptors, and FAK activation. Am J Physiol Cell Physiol (2009) 1.46

Road Traffic Injury Prevention Initiatives: A Systematic Review and Metasummary of Effectiveness in Low and Middle Income Countries. PLoS One (2016) 1.46

Influence of E3 region on conditionally replicative adenovirus mediated cytotoxicity in hepatocellular carcinoma cells. Cancer Biol Ther (2009) 1.45

Deletion-targeted multiplex PCR (DTM-PCR) for identification of Beijing/W genotypes of Mycobacterium tuberculosis. Tuberculosis (Edinb) (2007) 1.44

Mitochondrial phylogenetics and evolution of mysticete whales. Syst Biol (2005) 1.44

Adenomatous polyposis coli (APC)-independent regulation of beta-catenin degradation via a retinoid X receptor-mediated pathway. J Biol Chem (2003) 1.43

Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells. BMC Mol Biol (2009) 1.42

Remission of rheumatoid arthritis and potential determinants: a national multi-center cross-sectional survey. Clin Rheumatol (2014) 1.41

Intratumor injection of oncolytic adenovirus expressing HSP70 prolonged survival in melanoma B16 bearing mice by enhanced immune response. Cancer Biol Ther (2007) 1.40

Clinically reported heterozygous mutations in the PINK1 kinase domain exert a gene dosage effect. Hum Mutat (2009) 1.39

Bcl2 negatively regulates DNA double-strand-break repair through a nonhomologous end-joining pathway. Mol Cell (2008) 1.38

Transmission of drug-resistant tuberculosis among treated patients in Shanghai, China. J Infect Dis (2007) 1.36

Origin of mitochondrial DNA diversity of domestic yaks. BMC Evol Biol (2006) 1.35

Intrahepatic biliary cystadenoma and cystadenocarcinoma: an experience of 30 cases. Dig Liver Dis (2011) 1.35

Gene expression profile of murine long-term reconstituting vs. short-term reconstituting hematopoietic stem cells. Proc Natl Acad Sci U S A (2005) 1.32

Urbanization, land use, and water quality in Shanghai. 1947-1996. Environ Int (2003) 1.32

miR-203 reverses chemoresistance in p53-mutated colon cancer cells through downregulation of Akt2 expression. Cancer Lett (2011) 1.32

Insulin-like growth factor I induces migration and invasion of human multiple myeloma cells. Blood (2003) 1.31

Semantic search among heterogeneous biological databases based on gene ontology. Acta Biochim Biophys Sin (Shanghai) (2004) 1.30

ATDB: a uni-database platform for animal toxins. Nucleic Acids Res (2007) 1.30

Highly polymorphic variable-number tandem repeats loci for differentiating Beijing genotype strains of Mycobacterium tuberculosis in Shanghai, China. FEMS Microbiol Lett (2008) 1.29

Full-length genome sequences of two SARS-like coronaviruses in horseshoe bats and genetic variation analysis. J Gen Virol (2006) 1.28