Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter.

PubWeight™: 2.26‹?› | Rank: Top 2%

🔗 View Article (PMID 17362008)

Published in J Am Chem Soc on March 16, 2007

Authors

Anh Tuân Phan1, Vitaly Kuryavyi, Sarah Burge, Stephen Neidle, Dinshaw J Patel

Author Affiliations

1: Structural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10021, USA. phantuan@ntu.edu.sg

Articles citing this

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy? Nat Rev Drug Discov (2011) 3.54

Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res (2007) 3.49

Stability and kinetics of G-quadruplex structures. Nucleic Acids Res (2008) 2.75

Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions. Biochimie (2008) 2.38

Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes. Nucleic Acids Res (2008) 2.27

Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence. Nucleic Acids Res (2007) 2.23

Polymorphism of human telomeric quadruplex structures. Biochimie (2008) 1.89

A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes. Biochemistry (2007) 1.75

G-quadruplex nucleic acids as therapeutic targets. Curr Opin Chem Biol (2009) 1.74

How long is too long? Effects of loop size on G-quadruplex stability. Nucleic Acids Res (2010) 1.74

Making sense of G-quadruplex and i-motif functions in oncogene promoters. FEBS J (2010) 1.73

The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics. Nat Rev Cancer (2009) 1.71

5'-UTR G-quadruplex structures acting as translational repressors. Nucleic Acids Res (2010) 1.49

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA. Nucleic Acids Res (2011) 1.45

Structural insights into G-quadruplexes: towards new anticancer drugs. Future Med Chem (2010) 1.44

A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics. J Am Chem Soc (2009) 1.40

Targeting MYC Expression through G-Quadruplexes. Genes Cancer (2010) 1.29

Small-molecule-mediated G-quadruplex isolation from human cells. Nat Chem (2010) 1.26

Sequence occurrence and structural uniqueness of a G-quadruplex in the human c-kit promoter. Nucleic Acids Res (2007) 1.24

Protein hnRNP A1 and its derivative Up1 unfold quadruplex DNA in the human KRAS promoter: implications for transcription. Nucleic Acids Res (2009) 1.16

Genome-wide analysis of a G-quadruplex-specific single-chain antibody that regulates gene expression. Nucleic Acids Res (2009) 1.15

Targeting human gastrointestinal stromal tumor cells with a quadruplex-binding small molecule. J Med Chem (2009) 1.15

Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination. PLoS One (2009) 1.14

Structural polymorphism within a regulatory element of the human KRAS promoter: formation of G4-DNA recognized by nuclear proteins. Nucleic Acids Res (2008) 1.12

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro. Nucleic Acids Res (2011) 1.12

Quartets in G-major. The First International Meeting on Quadruplex DNA. EMBO Rep (2007) 1.11

Interaction of human telomeric DNA with N-methyl mesoporphyrin IX. Nucleic Acids Res (2012) 1.11

The C-terminus of nucleolin promotes the formation of the c-MYC G-quadruplex and inhibits c-MYC promoter activity. Biochemistry (2010) 1.07

Molecular cloning of the human platelet-derived growth factor receptor beta (PDGFR-beta) promoter and drug targeting of the G-quadruplex-forming region to repress PDGFR-beta expression. Biochemistry (2010) 1.06

The relationship of potential G-quadruplex sequences in cis-upstream regions of the human genome to SP1-binding elements. Nucleic Acids Res (2008) 1.06

The i-motif in the bcl-2 P1 promoter forms an unexpectedly stable structure with a unique 8:5:7 loop folding pattern. J Am Chem Soc (2009) 1.04

A sequence-independent analysis of the loop length dependence of intramolecular RNA G-quadruplex stability and topology. Biochemistry (2011) 1.04

Solution structures of all parallel-stranded monomeric and dimeric G-quadruplex scaffolds of the human c-kit2 promoter. Nucleic Acids Res (2010) 1.04

Selective recognition of a DNA G-quadruplex by an engineered antibody. Biochemistry (2008) 1.02

A thermodynamic overview of naturally occurring intramolecular DNA quadruplexes. Nucleic Acids Res (2008) 1.02

Crystal structure of a c-kit promoter quadruplex reveals the structural role of metal ions and water molecules in maintaining loop conformation. Nucleic Acids Res (2012) 1.01

Short loop length and high thermal stability determine genomic instability induced by G-quadruplex-forming minisatellites. EMBO J (2015) 0.94

The role of G-quadruplex/i-motif secondary structures as cis-acting regulatory elements. Pure Appl Chem (2010) 0.94

RecA-binding pilE G4 sequence essential for pilin antigenic variation forms monomeric and 5' end-stacked dimeric parallel G-quadruplexes. Structure (2012) 0.94

Solution structure of a unique G-quadruplex scaffold adopted by a guanosine-rich human intronic sequence. Structure (2010) 0.93

Targeting the c-Kit Promoter G-quadruplexes with 6-Substituted Indenoisoquinolines. ACS Med Chem Lett (2010) 0.93

U3 region in the HIV-1 genome adopts a G-quadruplex structure in its RNA and DNA sequence. Biochemistry (2014) 0.92

A dual-site simultaneous binding mode in the interaction between parallel-stranded G-quadruplex [d(TGGGGT)]4 and cyanine dye 2,2'-diethyl-9-methyl-selenacarbocyanine bromide. Nucleic Acids Res (2012) 0.86

Sequence, stability, and structure of G-quadruplexes and their interactions with drugs. Curr Protoc Nucleic Acid Chem (2012) 0.85

Polymorphism and resolution of oncogene promoter quadruplex-forming sequences. Org Biomol Chem (2011) 0.85

Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential. Methods (2012) 0.85

N-methylmesoporphyrin IX fluorescence as a reporter of strand orientation in guanine quadruplexes. FEBS J (2014) 0.84

The major G-quadruplex formed in the human platelet-derived growth factor receptor β promoter adopts a novel broken-strand structure in K+ solution. J Am Chem Soc (2012) 0.84

First International Meeting on Quadruplex DNA. ACS Chem Biol (2007) 0.84

Mapping the sequences of potential guanine quadruplex motifs. Nucleic Acids Res (2011) 0.84

Solution structure of all parallel G-quadruplex formed by the oncogene RET promoter sequence. Nucleic Acids Res (2011) 0.83

G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold. Nucleic Acids Res (2013) 0.83

Single-molecule investigation of G-quadruplex using a nanopore sensor. Methods (2012) 0.83

Guanine-vacancy-bearing G-quadruplexes responsive to guanine derivatives. Proc Natl Acad Sci U S A (2015) 0.83

Stimulation of ribosomal frameshifting by RNA G-quadruplex structures. Nucleic Acids Res (2013) 0.83

Not all G-quadruplexes are created equally: an investigation of the structural polymorphism of the c-Myc G-quadruplex-forming sequence and its interaction with the porphyrin TMPyP4. Org Biomol Chem (2012) 0.82

Rational design of substituted diarylureas: a scaffold for binding to G-quadruplex motifs. J Med Chem (2008) 0.82

Inhibition of cancer cell migration and invasion through suppressing the Wnt1-mediating signal pathway by G-quadruplex structure stabilizers. J Biol Chem (2014) 0.81

Verification of specific G-quadruplex structure by using a novel cyanine dye supramolecular assembly: II. The binding characterization with specific intramolecular G-quadruplex and the recognizing mechanism. Nucleic Acids Res (2009) 0.81

Recognition and discrimination of DNA quadruplexes by acridine-peptide conjugates. Org Biomol Chem (2008) 0.81

An acetylene-bridged 6,8-purine dimer as a fluorescent switch-on probe for parallel G-quadruplexes. Angew Chem Int Ed Engl (2012) 0.81

DNA acting like RNA. Biochem Soc Trans (2011) 0.80

Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes. BMC Genomics (2009) 0.79

Kinetic discrimination in recognition of DNA quadruplex targets by guanine-rich heteroquadruplex-forming PNA probes. Chem Commun (Camb) (2011) 0.79

Calculation of hydrodynamic properties for G-quadruplex nucleic acid structures from in silico bead models. Top Curr Chem (2013) 0.79

An in silico study of the differential effect of oxidation on two biologically relevant G-quadruplexes: possible implications in oncogene expression. PLoS One (2012) 0.79

Targeting DNA G-quadruplexes with helical small molecules. Chembiochem (2014) 0.79

Flexibility and structural conservation in a c-KIT G-quadruplex. Nucleic Acids Res (2014) 0.79

Extended molecular dynamics of a c-kit promoter quadruplex. Nucleic Acids Res (2015) 0.78

Shape matters: size-exclusion HPLC for the study of nucleic acid structural polymorphism. Nucleic Acids Res (2014) 0.78

Ion-dependent conformational switching by a DNA aptamer that induces remyelination in a mouse model of multiple sclerosis. Nucleic Acids Res (2012) 0.78

Sequencing and G-quadruplex folding of the canine proto-oncogene KIT promoter region: might dog be used as a model for human disease? PLoS One (2014) 0.78

G-register exchange dynamics in guanine quadruplexes. Nucleic Acids Res (2016) 0.78

Induction of senescence in cancer cells by the G-quadruplex stabilizer, BMVC4, is independent of its telomerase inhibitory activity. Br J Pharmacol (2012) 0.77

Resolution of quadruplex polymorphism by size-exclusion chromatography. Curr Protoc Nucleic Acid Chem (2011) 0.77

Synthesis and Evaluation of Quinazolone Derivatives as a New Class of c-KIT G-Quadruplex Binding Ligands. ACS Med Chem Lett (2013) 0.77

Duplex stem-loop-containing quadruplex motifs in the human genome: a combined genomic and structural study. Nucleic Acids Res (2015) 0.77

Discovery of a structural-element specific G-quadruplex "light-up" probe. Sci Rep (2014) 0.77

Highly fluorescent guanosine mimics for folding and energy transfer studies. Nucleic Acids Res (2011) 0.77

Possible regulatory roles of promoter g-quadruplexes in cardiac function-related genes - human TnIc as a model. PLoS One (2013) 0.76

Evidence for the kinetic partitioning of polymerase activity on G-quadruplex DNA. Biochemistry (2015) 0.76

Preparation of 6/8/11-Amino/Chloro-Oxoisoaporphine and Group-10 Metal Complexes and Evaluation of Their in Vitro and in Vivo Antitumor Activity. Sci Rep (2016) 0.76

Another step toward DNA selective targeting: Ni(II) and Cu(II) complexes of a Schiff base ligand able to bind gene promoter G-quadruplexes. Dalton Trans (2016) 0.75

Effects of G-Quadruplex Topology on Electronic Transfer Integrals. Nanomaterials (Basel) (2016) 0.75

Screening of candidate G-quadruplex ligands for the human c-KIT promotorial region and their effects in multiple in-vitro models. Oncotarget (2016) 0.75

Selective recognition and stabilization of new ligands targeting the potassium form of the human telomeric G-quadruplex DNA. Sci Rep (2016) 0.75

Molecular dynamics and principal components of potassium binding with human telomeric intra-molecular G-quadruplex. Protein Cell (2015) 0.75

Loop flexibility in human telomeric quadruplex small-molecule complexes. Nucleic Acids Res (2015) 0.75

Separation of Quadruplex Polymorphism in DNA Sequences by Reversed-Phase Chromatography. Curr Protoc Nucleic Acid Chem (2015) 0.75

G-quadruplex induced chirality of methylazacalix[6]pyridine via unprecedented binding stoichiometry: en route to multiplex controlled molecular switch. Sci Rep (2015) 0.75

Human Translesion Polymerase κ Exhibits Enhanced Activity and Reduced Fidelity Two Nucleotides from G-Quadruplex DNA. Biochemistry (2016) 0.75

Bis-indole derivatives with antitumor activity turn out to be specific ligands of human telomeric G-quadruplex. Front Chem (2014) 0.75

GNG Motifs Can Replace a GGG Stretch during G-Quadruplex Formation in a Context Dependent Manner. PLoS One (2016) 0.75

RNA G-quadruplexes in biology: Principles and molecular mechanisms. J Mol Biol (2017) 0.75

Chiral platinum (II)-4-(2,3-dihydroxypropyl)- formamide oxo-aporphine (FOA) complexes promote tumor cells apoptosis by directly targeting G-quadruplex DNA in vitro and in vivo. Oncotarget (2017) 0.75

Identification of SLIRP as a G Quadruplex-binding Protein. J Am Chem Soc (2017) 0.75

Articles cited by this

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription. Proc Natl Acad Sci U S A (2002) 9.60

Crystal structure of parallel quadruplexes from human telomeric DNA. Nature (2002) 8.90

Prevalence of quadruplexes in the human genome. Nucleic Acids Res (2005) 7.79

Human proto-oncogene c-kit: a new cell surface receptor tyrosine kinase for an unidentified ligand. EMBO J (1987) 7.32

Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res (2006) 6.42

Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. Structure (1993) 6.05

Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro. Science (1988) 5.97

Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res (2005) 5.34

Quadruplex structure of Oxytricha telomeric DNA oligonucleotides. Nature (1992) 4.24

DNA tetraplex formation in the control region of c-myc. Nucleic Acids Res (1998) 4.09

Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution. Nucleic Acids Res (2006) 3.87

Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J Am Chem Soc (2004) 3.74

Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization. Biochemistry (2005) 3.41

STI571 inactivation of the gastrointestinal stromal tumor c-KIT oncoprotein: biological and clinical implications. Oncogene (2001) 3.36

Putative DNA quadruplex formation within the human c-kit oncogene. J Am Chem Soc (2005) 3.28

Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J Am Chem Soc (2006) 3.26

A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene. Biochemistry (2006) 2.62

Dasatinib (BMS-354825), a dual SRC/ABL kinase inhibitor, inhibits the kinase activity of wild-type, juxtamembrane, and activation loop mutant KIT isoforms associated with human malignancies. Cancer Res (2006) 2.61

Effect of c-kit mutation on prognosis of gastrointestinal stromal tumors. Cancer Res (1999) 2.61

Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics. J Am Chem Soc (2003) 2.52

Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. J Mol Biol (2002) 2.29

Efficacy of the kinase inhibitor SU11248 against gastrointestinal stromal tumor mutants refractory to imatinib mesylate. Clin Cancer Res (2006) 2.23

The new models of the human telomere d[AGGG(TTAGGG)3] in K+ solution. Bioorg Med Chem (2006) 2.20

Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex. Structure (1994) 2.18

Activating c-kit gene mutations in human germ cell tumors. Am J Pathol (1999) 2.15

Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat Chem Biol (2005) 2.00

Signaling by Kit protein-tyrosine kinase--the stem cell factor receptor. Biochem Biophys Res Commun (2005) 2.00

Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res (2006) 1.98

A site-specific low-enrichment (15)N,(13)C isotope-labeling approach to unambiguous NMR spectral assignments in nucleic acids. J Am Chem Soc (2002) 1.77

Investigation of unusual DNA motifs. Methods Enzymol (2001) 1.75

An interlocked dimeric parallel-stranded DNA quadruplex: a potent inhibitor of HIV-1 integrase. Proc Natl Acad Sci U S A (2005) 1.71

(3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J Am Chem Soc (2005) 1.51

Long-range imino proton-13C J-couplings and the through-bond correlation of imino and non-exchangeable protons in unlabeled DNA. J Biomol NMR (2000) 1.51

Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex. J Mol Biol (1995) 1.44

Structural basis for binding of porphyrin to human telomeres. Biochemistry (2007) 1.37

Gastrointestinal stromal tumors. Hematol Oncol Clin North Am (2005) 1.27

Two-repeat Tetrahymena telomeric d(TGGGGTTGGGGT) Sequence interconverts between asymmetric dimeric G-quadruplexes in solution. J Mol Biol (2004) 1.19

A loss-of-function mutation of c-kit results in depletion of mast cells and interstitial cells of Cajal, while its gain-of-function mutation results in their oncogenesis. Mutat Res (2001) 1.11

Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytricha telomere repeats. Structure (1995) 1.07

Structure of a single-cytidine hairpin loop formed by the DNA triplet GCA. Nat Struct Biol (1995) 0.98

Molecular research directions in the management of gastrointestinal stromal tumors. Curr Treat Options Oncol (2005) 0.89

Articles by these authors

InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45

Crystal structure of parallel quadruplexes from human telomeric DNA. Nature (2002) 8.90

Multivalent engagement of chromatin modifications by linked binding modules. Nat Rev Mol Cell Biol (2007) 8.14

Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature (2006) 7.70

Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein. Nature (2005) 7.12

Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res (2006) 6.42

Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex. Nature (2008) 5.78

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem Biol (2004) 5.44

Structure of the guide-strand-containing argonaute silencing complex. Nature (2008) 5.36

Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res (2005) 5.34

Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes. Nature (2009) 5.24

Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage. Mol Cell (2005) 4.11

A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response. Nature (2012) 4.08

Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase. Cell (2013) 3.92

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature (2006) 3.90

Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol Cell (2006) 3.87

Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev (2006) 3.77

Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J Am Chem Soc (2004) 3.74

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy? Nat Rev Drug Discov (2011) 3.54

Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res (2007) 3.49

Recognition of small interfering RNA by a viral suppressor of RNA silencing. Nature (2003) 3.36

Putative DNA quadruplex formation within the human c-kit oncogene. J Am Chem Soc (2005) 3.28

Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J Am Chem Soc (2006) 3.26

Loop-length-dependent folding of G-quadruplexes. J Am Chem Soc (2004) 3.16

Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger. Nature (2009) 3.13

TRIM24 links a non-canonical histone signature to breast cancer. Nature (2010) 2.99

Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation. Science (2010) 2.98

WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity. Nature (2008) 2.86

Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions. Cell (2011) 2.68

EGFR modulates microRNA maturation in response to hypoxia through phosphorylation of AGO2. Nature (2013) 2.67

Structural basis for recognition and sequestration of UUU(OH) 3' temini of nascent RNA polymerase III transcripts by La, a rheumatic disease autoantigen. Mol Cell (2006) 2.63

A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene. Biochemistry (2006) 2.62

Ribozymes, riboswitches and beyond: regulation of gene expression without proteins. Nat Rev Genet (2007) 2.52

Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics. J Am Chem Soc (2003) 2.52

Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation. Nat Struct Mol Biol (2005) 2.50

Dicer recognizes the 5' end of RNA for efficient and accurate processing. Nature (2011) 2.49

Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger. Mol Cell (2007) 2.47

Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell (2010) 2.44

Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature (2008) 2.41

Structure of yeast Argonaute with guide RNA. Nature (2012) 2.38

Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. J Mol Biol (2002) 2.29

Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. Nat Struct Mol Biol (2006) 2.29

Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell (2012) 2.19

ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome. Nat Struct Mol Biol (2011) 2.18

Structural and functional insights into 5'-ppp RNA pattern recognition by the innate immune receptor RIG-I. Nat Struct Mol Biol (2010) 2.13

Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution. Nucleic Acids Res (2007) 2.09

The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature (2012) 2.07

Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1. Nat Struct Mol Biol (2008) 2.00

Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat Chem Biol (2005) 2.00

Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res (2006) 1.98

DNA architecture: from G to Z. Curr Opin Struct Biol (2006) 1.97

Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch. Nature (2009) 1.90

Stepwise translocation of Dpo4 polymerase during error-free bypass of an oxoG lesion. PLoS Biol (2006) 1.89

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. RNA (2012) 1.88

Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings. J Mol Biol (2002) 1.86

The G-quadruplex-interactive molecule BRACO-19 inhibits tumor growth, consistent with telomere targeting and interference with telomerase function. Cancer Res (2005) 1.84

Structure-function analysis of STING activation by c[G(2',5')pA(3',5')p] and targeting by antiviral DMXAA. Cell (2013) 1.82

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature (2013) 1.82

A poised chromatin platform for TGF-β access to master regulators. Cell (2011) 1.81

A site-specific low-enrichment (15)N,(13)C isotope-labeling approach to unambiguous NMR spectral assignments in nucleic acids. J Am Chem Soc (2002) 1.77

G-quadruplex nucleic acids as therapeutic targets. Curr Opin Chem Biol (2009) 1.74

Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers. J Am Chem Soc (2009) 1.74

An interlocked dimeric parallel-stranded DNA quadruplex: a potent inhibitor of HIV-1 integrase. Proc Natl Acad Sci U S A (2005) 1.71

The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. PLoS Biol (2006) 1.70

Structural insights into RNA recognition by the alternate-splicing regulator CUG-binding protein 1. Structure (2010) 1.67

Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol Cell (2010) 1.66

DAXX envelops a histone H3.3-H4 dimer for H3.3-specific recognition. Nature (2012) 1.65

Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation. Science (2012) 1.64

Impact of conformational heterogeneity of OxoG lesions and their pairing partners on bypass fidelity by Y family polymerases. Structure (2009) 1.59

Malignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets. Structure (2003) 1.56

(3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J Am Chem Soc (2005) 1.51

Structure of a G-quadruplex-ligand complex. J Mol Biol (2003) 1.49

Metabolite recognition principles and molecular mechanisms underlying riboswitch function. Annu Rev Biophys (2012) 1.47

Structural basis for glycosphingolipid transfer specificity. Nature (2004) 1.46

Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery. Biopolymers (2002) 1.43

A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev (2011) 1.43

An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting. Mol Cell (2012) 1.43

A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics. J Am Chem Soc (2009) 1.40

Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains. Proc Natl Acad Sci U S A (2010) 1.40

Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction. Nat Struct Mol Biol (2011) 1.38

Structural basis for binding of porphyrin to human telomeres. Biochemistry (2007) 1.37

A G-quadruplex-interactive potent small-molecule inhibitor of telomerase exhibiting in vitro and in vivo antitumor activity. Mol Pharmacol (2002) 1.33

Structure-specific recognition of quadruplex DNA by organic cations: influence of shape, substituents and charge. Biophys Chem (2006) 1.32

Structure of the first parallel DNA quadruplex-drug complex. J Am Chem Soc (2003) 1.26

Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage. Proc Natl Acad Sci U S A (2013) 1.26

Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature (2012) 1.26

Structural basis of DNA quadruplex recognition by an acridine drug. J Am Chem Soc (2008) 1.25

Lesion processing: high-fidelity versus lesion-bypass DNA polymerases. Trends Biochem Sci (2008) 1.24

Sequence occurrence and structural uniqueness of a G-quadruplex in the human c-kit promoter. Nucleic Acids Res (2007) 1.24

A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia. Nucleic Acids Res (2010) 1.22

Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization. J Mol Biol (2004) 1.21