Molecular mechanisms and potential functions of histone demethylases.

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Published in Nat Rev Mol Cell Biol on April 04, 2012

Authors

Susanne Marije Kooistra1, Kristian Helin

Author Affiliations

1: Biotech Research and Innovation Centre and Centre for Epigenetics, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark.

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Jarid1b targets genes regulating development and is involved in neural differentiation. EMBO J (2011) 1.50

A novel repressive E2F6 complex containing the polycomb group protein, EPC1, that interacts with EZH2 in a proliferation-specific manner. J Biol Chem (2004) 1.46

Tet2 facilitates the derepression of myeloid target genes during CEBPα-induced transdifferentiation of pre-B cells. Mol Cell (2012) 1.43

Epigenetic control of embryonic stem cell fate. J Exp Med (2010) 1.40

Genome-wide profiling identifies a DNA methylation signature that associates with TET2 mutations in diffuse large B-cell lymphoma. Haematologica (2013) 1.40

The histone demethylase PHF8 governs retinoic acid response in acute promyelocytic leukemia. Cancer Cell (2013) 1.38

SET8 is degraded via PCNA-coupled CRL4(CDT2) ubiquitylation in S phase and after UV irradiation. J Cell Biol (2011) 1.34

The histone methyltransferase and putative oncoprotein MMSET is overexpressed in a large variety of human tumors. Clin Cancer Res (2011) 1.26

Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36. Mol Cell Proteomics (2010) 1.23

Polycomb Cbx family members mediate the balance between haematopoietic stem cell self-renewal and differentiation. Nat Cell Biol (2013) 1.16

A role for the transcription factor HEY1 in glioblastoma. J Cell Mol Med (2008) 1.16

PU.1 target genes undergo Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation. Genome Biol (2013) 1.13

Suppression of the p53- or pRB-mediated G1 checkpoint is required for E2F-induced S-phase entry. Nat Genet (2002) 1.13

Reduced hepatic tumor incidence in cyclin G1-deficient mice. Hepatology (2003) 1.12

NPAT expression is regulated by E2F and is essential for cell cycle progression. Mol Cell Biol (2003) 1.12

Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones. Proteomics (2014) 1.11

The histone demethylase Jarid1b ensures faithful mouse development by protecting developmental genes from aberrant H3K4me3. PLoS Genet (2013) 1.09

The role of p53 and pRB in apoptosis and cancer. Curr Opin Genet Dev (2002) 1.09

The demethylase JMJD2C localizes to H3K4me3-positive transcription start sites and is dispensable for embryonic development. Mol Cell Biol (2014) 1.07

Utx is required for proper induction of ectoderm and mesoderm during differentiation of embryonic stem cells. PLoS One (2013) 1.07

Inhibitors of histone demethylases. Bioorg Med Chem (2011) 1.06

CHD5 is required for neurogenesis and has a dual role in facilitating gene expression and polycomb gene repression. Dev Cell (2013) 1.06

Molecular mechanisms in gliomagenesis. Adv Cancer Res (2005) 1.04

Studies of H3K4me3 demethylation by KDM5B/Jarid1B/PLU1 reveals strong substrate recognition in vitro and identifies 2,4-pyridine-dicarboxylic acid as an in vitro and in cell inhibitor. FEBS J (2012) 1.00

The polycomb repressive complex 2 is a potential target of SUMO modifications. PLoS One (2008) 0.99

Inhibition of GSK3B bypass drug resistance of p53-null colon carcinomas by enabling necroptosis in response to chemotherapy. Clin Cancer Res (2013) 0.98

Precision mapping of coexisting modifications in histone H3 tails from embryonic stem cells by ETD-MS/MS. Anal Chem (2013) 0.96

Conditional E2F1 activation in transgenic mice causes testicular atrophy and dysplasia mimicking human CIS. Oncogene (2005) 0.96

shRNA screening identifies JMJD1C as being required for leukemia maintenance. Blood (2014) 0.95

A novel zinc finger protein Zfp277 mediates transcriptional repression of the Ink4a/arf locus through polycomb repressive complex 1. PLoS One (2010) 0.95

Histone acetyltransferase PCAF is required for Hedgehog-Gli-dependent transcription and cancer cell proliferation. Cancer Res (2013) 0.95

Loss of MYC confers resistance to doxorubicin-induced apoptosis by preventing the activation of multiple serine protease- and caspase-mediated pathways. J Biol Chem (2004) 0.93

MMSET is highly expressed and associated with aggressiveness in neuroblastoma. Cancer Res (2011) 0.93

Hypermethylated in cancer 1 (HIC1) recruits polycomb repressive complex 2 (PRC2) to a subset of its target genes through interaction with human polycomb-like (hPCL) proteins. J Biol Chem (2012) 0.93

NEK11: linking CHK1 and CDC25A in DNA damage checkpoint signaling. Cell Cycle (2010) 0.93

Human TFDP3, a novel DP protein, inhibits DNA binding and transactivation by E2F. J Biol Chem (2006) 0.89

Profiling cancer. Curr Opin Cell Biol (2003) 0.89

Geminin: a major DNA replication safeguard in higher eukaryotes. Cell Cycle (2004) 0.89

The tumor suppressor gene hypermethylated in cancer 1 is transcriptionally regulated by E2F1. Mol Cancer Res (2009) 0.88

E2F-dependent induction of p14ARF during cell cycle re-entry in human T cells. Cell Cycle (2007) 0.88

Identification of catechols as histone-lysine demethylase inhibitors. FEBS Lett (2012) 0.85

Human CDT1 associates with CDC7 and recruits CDC45 to chromatin during S phase. J Biol Chem (2008) 0.85

Geminin deploys multiple mechanisms to regulate Cdt1 before cell division thus ensuring the proper execution of DNA replication. Proc Natl Acad Sci U S A (2013) 0.83

Epigenetic inheritance through self-recruitment of the polycomb repressive complex 2. Epigenetics (2009) 0.83

OVCA1: emerging as a bona fide tumor suppressor. Genes Dev (2004) 0.80

TET2 deficiency inhibits mesoderm and hematopoietic differentiation in human embryonic stem cells. Stem Cells (2014) 0.80

Visualization of multivalent histone modification in a single cell reveals highly concerted epigenetic changes on differentiation of embryonic stem cells. Nucleic Acids Res (2013) 0.80